mRNA_P-littoralis_Contig135.123.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig135.123.1
Unique NamemRNA_P-littoralis_Contig135.123.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig135.123.1 vs. uniprot
Match: D7FYY1_ECTSI (Protein serine/threonine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY1_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 7.640e-23
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:   91 EKNILGEGGFGIVQGASHSVLPGSFALKRLKKNAGGAAIYCATVEMIVMARLAKAPHPHVMGAIAIDDRE 300
            E  ++GEG FGIV+GA+HS LPG FA+K+LK+ A   A YCA VEMIVMARLAK+PHP+V+GAIAIDDRE
Sbjct:  403 ESGVIGEGSFGIVEGATHSFLPGEFAVKKLKEGADNNARYCARVEMIVMARLAKSPHPNVIGAIAIDDRE 472
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BLAST of mRNA_P-littoralis_Contig135.123.1 vs. uniprot
Match: A0A6H5L7R5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7R5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.840e-20
Identity = 54/94 (57.45%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:   28 CA-VRNAQVALNTHHENGALQEEKN---ILGEGGFGIVQGASHSVLPGSFALKRLKKNAGGAAIYCATVEMIVMARLAKAPHPHVMGAIAIDDR 297
            CA VR A+VAL      G          ILGEG FG+V+GAS S LPG FALKRLK++A   A YCA VEMIVM+RL   PHP+++GA+AIDDR
Sbjct:  537 CALVRAARVALGGSEGGGGANSPLRVGGILGEGSFGVVEGASLSFLPGEFALKRLKEDADDKARYCARVEMIVMSRLVNNPHPNIVGAVAIDDR 630
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BLAST of mRNA_P-littoralis_Contig135.123.1 vs. uniprot
Match: D7FYH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYH1_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 4.180e-11
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   88 EEKNILGEGGFGIVQGASHSVLPGSFALKRLKKNAGGAAIYCATVEMIVMAR 243
            +E  I+GEG FGIV GA+HS LPG FA+KRLK+ A   A YCA VEMIVMAR
Sbjct:  411 QEIGIIGEGSFGIVGGATHSFLPGEFAVKRLKEGADKNARYCARVEMIVMAR 462
[Close]
BLAST of mRNA_P-littoralis_Contig135.123.1 vs. uniprot
Match: A0A6H5JF73_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF73_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.670e-8
Identity = 37/95 (38.95%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:   91 EKNILGEGGFGIVQGASHSVLPGSFALKRLKKNAGGAA--------------IY------------CATVEMIVMARLAKAPHPHVMGAIAIDDR 297
            E  ++GEG FGIV+GA+HS LPG FA+K+LK+  G AA              I+            C  V   +   LA  PHP+++GA+AIDD+
Sbjct:  415 ESGVIGEGSFGIVKGATHSFLPGEFAVKKLKEVRGPAARAGRLVQGGGSWLLIHHFFASRLGRGGRCTNVNAPLRPCLANNPHPNIIGAVAIDDQ 509
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FYY1_ECTSI7.640e-2370.00Protein serine/threonine kinase n=1 Tax=Ectocarpus... [more]
A0A6H5L7R5_9PHAE2.840e-2057.45Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FYH1_ECTSI4.180e-1167.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF73_9PHAE1.670e-838.95Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:481935..482960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FYY1
PFAMsPkinase
Model size302
Max annot lvl2759|Eukaryota
KEGG koko:K05410
KEGG Pathwayko04014,ko04137,ko04620,ko04621,ko04622,ko04623,ko04657,ko05160,ko05161,ko05162,ko05164,ko05165,ko05167,ko05168,ko05169,map04014,map04137,map04620,map04621,map04622,map04623,map04657,map05160,map05161,map05162,map05164,map05165,map05167,map05168,map05169
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.25e-23
EggNOG OGsCOG0515@1|root,KOG4250@2759|Eukaryota
EC2.7.11.10
DescriptionIkappaB kinase activity
Cds size300
COG categoryKLT
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789623.8264227-CDS-P-littoralis_Contig135:481934..4821201680789623.8264227-CDS-P-littoralis_Contig135:481934..482120Pylaiella littoralis U1_48CDSP-littoralis_Contig135 481935..482120 +
1680789623.8552392-CDS-P-littoralis_Contig135:482495..4825511680789623.8552392-CDS-P-littoralis_Contig135:482495..482551Pylaiella littoralis U1_48CDSP-littoralis_Contig135 482496..482551 +
1680789623.8657691-CDS-P-littoralis_Contig135:482902..4829601680789623.8657691-CDS-P-littoralis_Contig135:482902..482960Pylaiella littoralis U1_48CDSP-littoralis_Contig135 482903..482960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.123.1prot_P-littoralis_Contig135.123.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig135 481935..482960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig135.123.1

>prot_P-littoralis_Contig135.123.1 ID=prot_P-littoralis_Contig135.123.1|Name=mRNA_P-littoralis_Contig135.123.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MTGSLESLSCAVRNAQVALNTHHENGALQEEKNILGEGGFGIVQGASHSV
LPGSFALKRLKKNAGGAAIYCATVEMIVMARLAKAPHPHVMGAIAIDDRE
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mRNA from alignment at P-littoralis_Contig135:481935..482960+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig135.123.1 ID=mRNA_P-littoralis_Contig135.123.1|Name=mRNA_P-littoralis_Contig135.123.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1026bp|location=Sequence derived from alignment at P-littoralis_Contig135:481935..482960+ (Pylaiella littoralis U1_48)
ATGACGGGAAGCTTAGAAAGCTTGAGCTGCGCGGTGCGGAACGCCCAGGT
TGCCCTTAATACACACCATGAAAACGGAGCGTTGCAGGAAGAGAAGAATA
TTCTTGGCGAGGGTGGATTTGGCATCGTCCAGGGTGCGAGCCACAGCGTC
TTGCCGGGTAGCTTCGCTTTGAAGAGGCTGAAGAAGGTGAGGTTCTGTAG
TCTGTGTTATGGTAGCAGCTTTGTAGAGTAGAGGTTCGATACAAGGGAAC
AAGAGGAGTCTGTTGAGGAGGGGAGTGAGCCATGATACGCGTCAGATCGC
TTATCAAACGATGCAGGTACGTCGGTCGACGTGGTATGGCAGAAATAGCC
TATGCGCGGTTCACAGTAGCTGCGGCCGCAACAAGCTCATTTACTAGCAG
AAGCTTGTATTTGTAGCACGGATGTTGGATACCCGCTGCAGCGCGATTGA
CCGCGGCAGCTGAGCCTCTGGAAGCACCACGAAAGCCATCCAAGATAATC
GCGTTTCCCTTGCTGCCCCACCCGCTCCTACTCGCTCGATGCGGTTGATG
GTGCACTCCAGAACGCGGGCGGTGCGGCGATTTACTGTGCAACGGTGGAG
ATGATCGTGATGGCTCGGTGAGAACCAAAACGGGTATCGAGCAGAGTACA
GGCGGAATCTACACCCTCGAAAATGCCTAGGGCGTGGCTATCATTTTGTT
TGTTAATCTGGAGTAGCGGTTGGTTTAGGACAAACACGTGGCAAGCGACC
AGCGTTTATTTCGTTCGGTAATGACCTACTCCGTACGAAAAATACCGTGA
GAGTAATCAGCGACCAGACTCTCAAGAAGGGCTTTCCCTCTCTTGTTCCG
ACACGAGCAACCTACGGCCATCCATCCAACAATGAGTACACGATAGAGCT
GTCAGATGGAGCGTCTGATCCCCTGGCGTGCCCCTGTCGCTTGTGTTTGT
GGGACTGTACGTTTGTAGTCTCGCCAAGGCGCCCCACCCGCACGTAATGG
GTGCCATAGCGATCGACGACCGAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig135:481935..482960+

>mRNA_P-littoralis_Contig135.123.1 ID=mRNA_P-littoralis_Contig135.123.1|Name=mRNA_P-littoralis_Contig135.123.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig135:481935..482960+ (Pylaiella littoralis U1_48)
ATGACGGGAAGCTTAGAAAGCTTGAGCTGCGCGGTGCGGAACGCCCAGGT
TGCCCTTAATACACACCATGAAAACGGAGCGTTGCAGGAAGAGAAGAATA
TTCTTGGCGAGGGTGGATTTGGCATCGTCCAGGGTGCGAGCCACAGCGTC
TTGCCGGGTAGCTTCGCTTTGAAGAGGCTGAAGAAGAACGCGGGCGGTGC
GGCGATTTACTGTGCAACGGTGGAGATGATCGTGATGGCTCGTCTCGCCA
AGGCGCCCCACCCGCACGTAATGGGTGCCATAGCGATCGACGACCGAGAG
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