mRNA_P-littoralis_Contig135.118.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig135.118.1
Unique NamemRNA_P-littoralis_Contig135.118.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig135.118.1 vs. uniprot
Match: A0A6H5K4K8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.710e-7
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 EHPDKFFARLDSMLHILSYAGEKKSEADIVRIIRRRLPDRLYLVEKRSVLIASGLSREKVEESIRSAFARYQSAKLLGSTSSAAAPA 261
            E P  FFAR+D +++I+   G +KSE  IV II R+L    Y +E++S+L+   +SR KVE  +R+A+A     K LG   +A A A
Sbjct:   55 EDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHE-YDIERKSILVDPTISRAKVENVVRTAYANKVMMKELGKAQAAPAAA 140
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BLAST of mRNA_P-littoralis_Contig135.118.1 vs. uniprot
Match: A0A6H5JQ49_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ49_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.970e-6
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 EHPDKFFARLDSMLHILSYAGEKKSEADIVRIIRRRLPDRLYLVEKRSVLIASGLSREKVEESIRSAFARYQSAKLLGSTSSAAAPA 261
            E P  FFAR+D +++I+   G +KSE  IV II R+L    Y +E++S+L    +SR KVE  +R+A+A     K LG   +A A A
Sbjct:   55 EDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHE-YDIERKSILADPTISRAKVENVVRAAYANKVMMKELGKAQAAPAAA 140
[Close]
BLAST of mRNA_P-littoralis_Contig135.118.1 vs. uniprot
Match: A0A6H5JS28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS28_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.030e-6
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 EHPDKFFARLDSMLHILSYAGEKKSEADIVRIIRRRLPDRLYLVEKRSVLIASGLSREKVEESIRSAFARYQSAKLLGSTSSAAAPA 261
            E P  FFAR+D +++I+   G +KSE  IV II R+L    Y +E++S+L    +SR KVE  +R+A+A     K LG   +A A A
Sbjct:   55 EDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHE-YDIERKSILADPTISRAKVENVVRAAYANKVMMKELGKAQAAPAAA 140
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BLAST of mRNA_P-littoralis_Contig135.118.1 vs. uniprot
Match: A0A6H5KIP6_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP6_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.150e-6
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 EHPDKFFARLDSMLHILSYAGEKKSEADIVRIIRRRLPDRLYLVEKRSVLIASGLSREKVEESIRSAFARYQSAKLLGSTSSAAAPA 261
            E P  FFAR+D +++I+   G +KSE  IV II R+L    Y +E++S+L    +SR KVE  +R+A+A     K LG   +A A A
Sbjct:  187 EDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHE-YDIERKSILADPTISRAKVENVVRAAYANKVMMKELGKAQAAPAAA 272
[Close]
BLAST of mRNA_P-littoralis_Contig135.118.1 vs. uniprot
Match: A0A6H5JNE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE4_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.160e-6
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 EHPDKFFARLDSMLHILSYAGEKKSEADIVRIIRRRLPDRLYLVEKRSVLIASGLSREKVEESIRSAFARYQSAKLLGSTSSAAAPA 261
            E P  FFAR+D +++I+   G +KSE  IV II R+L    Y +E++S+L    +SR KVE  +R+A+A     K LG   +A A A
Sbjct:  242 EDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHE-YDIERKSILADPTISRAKVENVVRAAYANKVMMKELGKAQAAPAAA 327
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BLAST of mRNA_P-littoralis_Contig135.118.1 vs. uniprot
Match: A0A6H5L4A7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A7_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.180e-6
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 EHPDKFFARLDSMLHILSYAGEKKSEADIVRIIRRRLPDRLYLVEKRSVLIASGLSREKVEESIRSAFARYQSAKLLGSTSSAAAPA 261
            E P  FFAR+D +++I+   G +KSE  IV II R+L    Y +E++S+L    +SR KVE  +R+A+A     K LG   +A A A
Sbjct:  187 EDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHE-YDIERKSILADPTISRAKVENVVRAAYANKVMMKELGKAQAAPAAA 272
[Close]
BLAST of mRNA_P-littoralis_Contig135.118.1 vs. uniprot
Match: A0A6H5KYI1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.220e-6
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 EHPDKFFARLDSMLHILSYAGEKKSEADIVRIIRRRLPDRLYLVEKRSVLIASGLSREKVEESIRSAFARYQSAKLLGSTSSAAAPA 261
            E P  FFAR+D +++I+   G +KSE  IV II R+L    Y +E++S+L    +SR KVE  +R+A+A     K LG   +A A A
Sbjct:  187 EDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHE-YDIERKSILADPTISRAKVENVVRAAYANKVMMKELGKAQAAPAAA 272
[Close]
BLAST of mRNA_P-littoralis_Contig135.118.1 vs. uniprot
Match: A0A6H5JQJ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ2_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 3.960e-6
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 EHPDKFFARLDSMLHILSYAGEKKSEADIVRIIRRRLPDRLYLVEKRSVLIASGLSREKVEESIRSAFA 207
            E P  FFAR+D +++I+   G +KSE  IV II R+L  + Y +E+ S+L    +SR KVE  +R+A+A
Sbjct:   55 EDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHK-YDIERESILADPTISRAKVENVVRAAYA 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5K4K8_9PHAE2.710e-741.38Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQ49_9PHAE1.970e-641.38Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS28_9PHAE2.030e-641.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIP6_9PHAE2.150e-641.38CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JNE4_9PHAE2.160e-641.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4A7_9PHAE2.180e-641.38CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KYI1_9PHAE2.220e-641.38CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQJ2_9PHAE3.960e-643.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:464966..465407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size444
Hectar predicted targeting categoryother localisation
Exons1
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789623.7980032-CDS-P-littoralis_Contig135:464965..4654061680789623.7980032-CDS-P-littoralis_Contig135:464965..465406Pylaiella littoralis U1_48CDSP-littoralis_Contig135 464966..465406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.118.1prot_P-littoralis_Contig135.118.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig135 464966..465406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig135.118.1

>prot_P-littoralis_Contig135.118.1 ID=prot_P-littoralis_Contig135.118.1|Name=mRNA_P-littoralis_Contig135.118.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=147bp
EHPDKFFARLDSMLHILSYAGEKKSEADIVRIIRRRLPDRLYLVEKRSVL
IASGLSREKVEESIRSAFARYQSAKLLGSTSSAAAPATPAPAPATVATSP
SHALVFGAGGNFRRGGGRGGVGSGAYDGHAAPPQPRPHPSQQPDGGS
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mRNA from alignment at P-littoralis_Contig135:464966..465407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig135.118.1 ID=mRNA_P-littoralis_Contig135.118.1|Name=mRNA_P-littoralis_Contig135.118.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=442bp|location=Sequence derived from alignment at P-littoralis_Contig135:464966..465407+ (Pylaiella littoralis U1_48)
GAGCACCCCGACAAGTTCTTCGCGAGACTGGATAGTATGCTGCACATCCT
CTCATATGCTGGGGAAAAGAAGTCGGAGGCGGATATTGTTCGTATCATTC
GCCGCCGTCTTCCTGACCGTTTATATCTCGTCGAAAAACGGTCTGTGCTG
ATTGCATCTGGTCTCTCTCGGGAGAAGGTCGAGGAGAGTATACGCAGTGC
TTTCGCTCGATACCAGTCTGCGAAGCTGCTGGGGTCCACGTCGTCGGCAG
CAGCGCCGGCGACACCTGCCCCCGCCCCAGCCACCGTTGCTACGAGTCCA
TCTCATGCTCTGGTTTTTGGTGCGGGGGGCAACTTCCGTCGCGGAGGCGG
CCGTGGGGGAGTTGGCTCTGGTGCGTACGATGGTCATGCTGCACCCCCAC
AGCCGCGTCCGCATCCCTCCCAGCAGCCAGACGGCGGTAGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig135:464966..465407+

>mRNA_P-littoralis_Contig135.118.1 ID=mRNA_P-littoralis_Contig135.118.1|Name=mRNA_P-littoralis_Contig135.118.1|organism=Pylaiella littoralis U1_48|type=CDS|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig135:464966..465407+ (Pylaiella littoralis U1_48)
GAGCACCCCGACAAGTTCTTCGCGAGACTGGATAGTATGCTGCACATCCT
CTCATATGCTGGGGAAAAGAAGTCGGAGGCGGATATTGTTCGTATCATTC
GCCGCCGTCTTCCTGACCGTTTATATCTCGTCGAAAAACGGTCTGTGCTG
ATTGCATCTGGTCTCTCTCGGGAGAAGGTCGAGGAGAGTATACGCAGTGC
TTTCGCTCGATACCAGTCTGCGAAGCTGCTGGGGTCCACGTCGTCGGCAG
CAGCGCCGGCGACACCTGCCCCCGCCCCAGCCACCGTTGCTACGAGTCCA
TCTCATGCTCTGGTTTTTGGTGCGGGGGGCAACTTCCGTCGCGGAGGCGG
CCGTGGGGGAGTTGGCTCTGGTGCGTACGATGGTCATGCTGCACCCCCAC
AGCCGCGTCCGCATCCCTCCCAGCAGCCAGACGGCGGTAGT
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