mRNA_P-littoralis_Contig135.95.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig135.95.1
Unique NamemRNA_P-littoralis_Contig135.95.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig135.95.1 vs. uniprot
Match: A0A6H5JU85_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU85_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 5.470e-15
Identity = 42/62 (67.74%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   19 MRGWYRTIGTGPSPPALHRTPI**LEHLLVSHSVCALVPSQARLAAKEGCPIVNGESRKMKT 204
            MRG    I TGPSP ALHRTPI  LE LL SHS CAL  SQA L AKEG  I+NGESRK +T
Sbjct:    1 MRG---RIRTGPSPQALHRTPIRLLERLLDSHSACALAASQAGLVAKEGGLIINGESRKTET 59
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BLAST of mRNA_P-littoralis_Contig135.95.1 vs. uniprot
Match: A0A6H5K8U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8U0_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 4.960e-12
Identity = 38/61 (62.30%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   19 MRGWYRTIGTGPSPPALHRTPI**LEHLLVSHSVCALVPSQARLAAKEGCPIVNGESRKMK 201
            MRG    I TGPSP ALHRTPI  LE LL SHS CAL  SQA L AKEG  I+NG  R ++
Sbjct:    1 MRG---RIRTGPSPQALHRTPIRLLERLLDSHSACALAASQAGLVAKEGGLIINGRPRGLQ 58
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BLAST of mRNA_P-littoralis_Contig135.95.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.050e-11
Identity = 46/96 (47.92%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:   19 MRGWYRTIGTGPSPPALHRTPI**LEHLLVSHSVCALVPSQARLAAKEGCPIVNGESRKMKT*---PNMTIGDPGGRTKLANMLATQPSRSSLSAR 297
            MRGW RT   GPSP ALHRTPI   E LL SHS CAL  SQA L  KEG PI+NG    M+     P+    +   R      L+TQ    S  AR
Sbjct:    1 MRGWIRT---GPSPQALHRTPIRLPERLLDSHSACALAASQAGLVVKEGGPIINGSVLPMQGSQHTPDRPAREGSQRRHTTPSLSTQAWEESRGAR 93
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BLAST of mRNA_P-littoralis_Contig135.95.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.780e-11
Identity = 39/61 (63.93%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   19 MRGWYRTIGTGPSPPALHRTPI**LEHLLVSHSVCALVPSQARLAAKEGCPIVNGESRKMK 201
            MRGW RT   GPSP ALHRTPI  LE LL SHS CAL  SQA L AKEG  I+NG    M+
Sbjct:    1 MRGWIRT---GPSPQALHRTPIRLLERLLDSHSACALAASQAGLVAKEGGLIINGSVLPMQ 58
[Close]
BLAST of mRNA_P-littoralis_Contig135.95.1 vs. uniprot
Match: A0A6H5KEF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.860e-9
Identity = 36/52 (69.23%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 RRRARHMRGWYRTIGTGPSPPALHRTPI**LEHLLVSHSVCALVPSQARLAA 156
            RRRA HMRGW RT   GPSP ALHRTPI  LE LL SHS CAL  SQA L +
Sbjct:   27 RRRAWHMRGWIRT---GPSPQALHRTPIRLLERLLDSHSACALAASQAWLGS 75
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JU85_9PHAE5.470e-1567.74Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8U0_9PHAE4.960e-1262.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI2.050e-1147.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVF4_9PHAE2.780e-1163.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEF8_9PHAE1.860e-969.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:383581..384824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size422
Hectar predicted targeting categoryother localisation
Exons2
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789623.3041232-CDS-P-littoralis_Contig135:383580..3836891680789623.3041232-CDS-P-littoralis_Contig135:383580..383689Pylaiella littoralis U1_48CDSP-littoralis_Contig135 383581..383689 -
1680789623.3134062-CDS-P-littoralis_Contig135:384511..3847981680789623.3134062-CDS-P-littoralis_Contig135:384511..384798Pylaiella littoralis U1_48CDSP-littoralis_Contig135 384512..384798 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789623.3231897-UTR-P-littoralis_Contig135:384798..3848241680789623.3231897-UTR-P-littoralis_Contig135:384798..384824Pylaiella littoralis U1_48UTRP-littoralis_Contig135 384799..384824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.95.1prot_P-littoralis_Contig135.95.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig135 383581..384798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig135.95.1

>prot_P-littoralis_Contig135.95.1 ID=prot_P-littoralis_Contig135.95.1|Name=mRNA_P-littoralis_Contig135.95.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MVQDHRDRALSTRPSPYTHLIARASTGLALSVRSSTITGPAGGEGRVPNR
QRGVEKNENMTKHDHRRSGGSDKTGEHARHAALTLVSERTVRCARRVEQG
VAWTRILCAMWSPDRRRGPDHRQSSRETCSW*
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mRNA from alignment at P-littoralis_Contig135:383581..384824-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig135.95.1 ID=mRNA_P-littoralis_Contig135.95.1|Name=mRNA_P-littoralis_Contig135.95.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1244bp|location=Sequence derived from alignment at P-littoralis_Contig135:383581..384824- (Pylaiella littoralis U1_48)
AGAAGGCGTGCACGGCACATGCGGGGATGGTACAGGACCATAGGGACAGG
GCCCTCTCCACCCGCCCTTCACCGTACACCCATCTGATAGCTCGAGCATC
TACTGGTCTCGCACTCAGTGTGCGCTCTAGTACCATCACAGGCCCGGCTG
GCGGCGAAGGAAGGGTGCCCAATCGTCAACGGGGAGTCGAGAAAAATGAA
AACATGACCAAACATGACCATAGGAGATCCGGGGGGTCGGACAAAACTGG
CGAACATGCTCGCCACGCAGCCCTCACGCTCGTCTCTGAGCGCACGGTTC
GCTGCGCAAGAAGGTTGGGAGCATAGAGTGTGTAAGTCTGGCTTTCTCGG
ACAGAAGTCCGTTTGTCAAACGGTGTAGTGTACGCAGAGCAATGTCCAAA
CTTCGGACCCATAACCGTCACAGTGCCGTATCTCTCCGCTTGGGCACACT
AAAATGGACTGGTTTGTCAAGCAGTTTGTTTGCACAATCAGAACGCTGTC
CTCCTGCTGCAACAGCTGAACCCCGCAGCATAACCTCCCCAACATGTTGC
ACAGCACCACCTCAGTAGAAGCTGGGGGAGTGCTGCACACCCTGTCATGT
AGCATAGCCGCGTCAGACGCCTTTTTTGTCACTTGTGTCTCAATATTGTC
ACGGACCCACCGCCGTGTTCGACTCAAGATGACACACCCCCTAGACCGAC
AATCAAAGCACGATTATCGACAACGAAGCGACGAGGAAGAGGACTTACGT
GTCGAAACGATACCCTGTGGGAGAGCTCTCAACCTGCCCGTAGCAACGCG
GACGTTTTCCGCGCTACCACTATTTCAGCTGTTGTTGATAAGTCGAGCTA
TGGAAATCGGTCCAGGTGATGTGTTGTCTTGCGTCGTACCACGGCCGTGG
TAGGTGTGTTATCCTGCGTCGTACAGCGTATGCACCCCCCCCGGCAGCAG
CATGTTGTTCGCATACATAGCTACGCAGCTGATGCTTCCGGCGTCCATCC
TTGTTCTGCATCATCATGTACTAAAATTAGCCTCCATGTTGGGTGGGGTC
CTCACGAAGGGCCATCAAGCGGTCAACCAGCACTTCAGCCGCGTTCATGT
GGTAGCTCCTTCCCCTGCCTGGTTTCAAATTTCAGGGTTGAACAGGGTGT
GGCATGGACCCGAATACTCTGCGCGATGTGGTCTCCGGATCGAAGGAGGG
GTCCGGACCATCGCCAGTCAAGCCGAGAGACGTGTTCATGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig135:383581..384824-

>mRNA_P-littoralis_Contig135.95.1 ID=mRNA_P-littoralis_Contig135.95.1|Name=mRNA_P-littoralis_Contig135.95.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig135:383581..384824- (Pylaiella littoralis U1_48)
ATGGTACAGGACCATAGGGACAGGGCCCTCTCCACCCGCCCTTCACCGTA
CACCCATCTGATAGCTCGAGCATCTACTGGTCTCGCACTCAGTGTGCGCT
CTAGTACCATCACAGGCCCGGCTGGCGGCGAAGGAAGGGTGCCCAATCGT
CAACGGGGAGTCGAGAAAAATGAAAACATGACCAAACATGACCATAGGAG
ATCCGGGGGGTCGGACAAAACTGGCGAACATGCTCGCCACGCAGCCCTCA
CGCTCGTCTCTGAGCGCACGGTTCGCTGCGCAAGAAGGGTTGAACAGGGT
GTGGCATGGACCCGAATACTCTGCGCGATGTGGTCTCCGGATCGAAGGAG
GGGTCCGGACCATCGCCAGTCAAGCCGAGAGACGTGTTCATGGTGA
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