mRNA_P-littoralis_Contig135.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig135.63.1
Unique NamemRNA_P-littoralis_Contig135.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig135.63.1 vs. uniprot
Match: D8LSG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG2_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 3.520e-27
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 WLLSPGWFSRAVEGLQQWLADGEEGVIPNFRDAAAAALGERWASTPPGWYDPGGDKPSFV 180
            WLLSPGW SRAVE +Q+WLADG+EGVIP+FRDAAAAA GERWASTP GWY+PGGD PSFV
Sbjct: 1545 WLLSPGWASRAVEEIQKWLADGDEGVIPSFRDAAAAAFGERWASTPSGWYEPGGDMPSFV 1604
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BLAST of mRNA_P-littoralis_Contig135.63.1 vs. uniprot
Match: A0A6H5KSH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.710e-14
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:   37 EGLQQWLA--DGEEGVIPNFRDAAAAALGERWASTPPGWYDPGGDKPSFVTDDDDDNDGTTNGD 222
            E +  WLA  DG+  VIP+FRDAAAAA GERW STP GW+DPGGD PSFV  D +D    ++GD
Sbjct:  183 ESIADWLAPADGDVLVIPSFRDAAAAAFGERWRSTPAGWFDPGGDMPSFVAADLNDEGSESDGD 246
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSG2_ECTSI3.520e-2783.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSH1_9PHAE1.710e-1460.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:237293..238302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size298
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789622.8880155-CDS-P-littoralis_Contig135:237292..2373671680789622.8880155-CDS-P-littoralis_Contig135:237292..237367Pylaiella littoralis U1_48CDSP-littoralis_Contig135 237293..237367 +
1680789622.8988743-CDS-P-littoralis_Contig135:238081..2383001680789622.8988743-CDS-P-littoralis_Contig135:238081..238300Pylaiella littoralis U1_48CDSP-littoralis_Contig135 238082..238300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.63.1prot_P-littoralis_Contig135.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig135 237293..238300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig135.63.1

>prot_P-littoralis_Contig135.63.1 ID=prot_P-littoralis_Contig135.63.1|Name=mRNA_P-littoralis_Contig135.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
WLLSPGWFSRAVEGLQQWLADGEEGVIPNFRDAAAAALGERWASTPPGWY
DPGGDKPSFVTDDDDDNDGTTNGDNVHLRGRSRFSSSVTTPTMLGRGA
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mRNA from alignment at P-littoralis_Contig135:237293..238302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig135.63.1 ID=mRNA_P-littoralis_Contig135.63.1|Name=mRNA_P-littoralis_Contig135.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1010bp|location=Sequence derived from alignment at P-littoralis_Contig135:237293..238302+ (Pylaiella littoralis U1_48)
TGGCTGCTGAGCCCTGGTTGGTTTTCGAGGGCCGTGGAAGGCCTGCAGCA
GTGGCTAGCGGATGGGGAGGAGGGGGTACGAATATTGCCCATTTTTCGTT
TGAAACCGAGTTCATGTTTGGGGCTCAAATTATATTTACTCATAGTTATC
CGGAGTATAATTTTTCTATGGCACTCGCCGTTTGAGAACAAGGGAATCGA
TCACGTTCTTCAAACGAATAGAAATTTGGAAACCGTTTCGAAGAGCATTT
AGCTTTAGCAGTATCGAAAGGAATATCACGTGATCGCGGATATTCTAATT
ATTGTGGTGTCGTTTGGTCGCAGCAGCAGCACTTTGTCAGTGCTCGGGGA
GGGTAACGCCAAGTGCTAGAATGCGACCAGGTTGTTTCTGATGTGATAGT
CTCGCCTAGTTTGCCAGTTCCCTTTTCCAGGCTTCGTGCAGGAAAAAACA
GCCACCTCGAGGGATGGATGAAAACGATTTTCACGGCGTGACGGGGGGCT
CCCACACTTTCCATCCTCTCCTTGTTGGGACCAAGCCCGAAGCTCTGGAC
CTGCTGGCGCTTCCTCCGCTTTCGTGCCCAAATGAAACCTGCTTGGGATT
GATTGTGGACGGAGGGGGAATGGAAGGGTCGACATTAGGGTATTCTGCCG
AAGGCCCCCTACAAACTGTATGCACAGCATCAGCAGCAGTCCAGTAGCAA
GCCGAGTAGCTCCGGACGCCAACAAGCACGCGCCACCCACCCTCCCCGCT
CCCGAACCCTTGAACTAAACCGCTTCACCACGATGTCAGGTGATCCCGAA
CTTCAGGGACGCAGCTGCGGCGGCTCTTGGGGAGAGGTGGGCCAGCACTC
CTCCGGGATGGTACGACCCCGGGGGCGACAAACCCTCCTTCGTTACCGAT
GACGACGACGACAATGACGGCACTACCAACGGCGACAACGTTCATTTGCG
AGGCCGTAGCCGCTTCAGCTCAAGCGTCACGACACCGACCATGCTTGGAC
GAGGGGCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig135:237293..238302+

>mRNA_P-littoralis_Contig135.63.1 ID=mRNA_P-littoralis_Contig135.63.1|Name=mRNA_P-littoralis_Contig135.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig135:237293..238302+ (Pylaiella littoralis U1_48)
TGGCTGCTGAGCCCTGGTTGGTTTTCGAGGGCCGTGGAAGGCCTGCAGCA
GTGGCTAGCGGATGGGGAGGAGGGGGTGATCCCGAACTTCAGGGACGCAG
CTGCGGCGGCTCTTGGGGAGAGGTGGGCCAGCACTCCTCCGGGATGGTAC
GACCCCGGGGGCGACAAACCCTCCTTCGTTACCGATGACGACGACGACAA
TGACGGCACTACCAACGGCGACAACGTTCATTTGCGAGGCCGTAGCCGCT
TCAGCTCAAGCGTCACGACACCGACCATGCTTGGACGAGGGGCA
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