mRNA_P-littoralis_Contig135.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig135.62.1
Unique NamemRNA_P-littoralis_Contig135.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig135.62.1 vs. uniprot
Match: D8LSG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG2_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 8.010e-33
Identity = 87/110 (79.09%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 AKSSRDGRGSMGSPPGSVETAGGGSXXXXXX--ASLMAALAAERDAAAELEAAEASAAERVAREFREFFANIPRDYRDELGFTDVLVSVVRIRY-RAGPQANAGAAGTTP 321
            AKS  DGRGS+GSPPGS+ETAGGG XXXXXX   SL+AALAAERDAA ELEAAEASAAERVAREFR FF NIPRDYR+ELGFTDVLVSVVRIRY    P+  AGA   TP
Sbjct: 1089 AKSPGDGRGSLGSPPGSIETAGGGXXXXXXXXQTSLLAALAAERDAALELEAAEASAAERVAREFRGFFQNIPRDYRNELGFTDVLVSVVRIRYGNNSPKTFAGAGAATP 1198
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSG2_ECTSI8.010e-3379.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:230400..232279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size322
Hectar predicted targeting categoryother localisation
Exons3
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789622.810764-UTR-P-littoralis_Contig135:230399..2304251680789622.810764-UTR-P-littoralis_Contig135:230399..230425Pylaiella littoralis U1_48UTRP-littoralis_Contig135 230400..230425 +
1680789622.8210206-UTR-P-littoralis_Contig135:230912..2309161680789622.8210206-UTR-P-littoralis_Contig135:230912..230916Pylaiella littoralis U1_48UTRP-littoralis_Contig135 230913..230916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789622.8341103-CDS-P-littoralis_Contig135:230916..2311021680789622.8341103-CDS-P-littoralis_Contig135:230916..231102Pylaiella littoralis U1_48CDSP-littoralis_Contig135 230917..231102 +
1680789622.8450356-CDS-P-littoralis_Contig135:232174..2322791680789622.8450356-CDS-P-littoralis_Contig135:232174..232279Pylaiella littoralis U1_48CDSP-littoralis_Contig135 232175..232279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.62.1prot_P-littoralis_Contig135.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig135 230917..232279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig135.62.1

>prot_P-littoralis_Contig135.62.1 ID=prot_P-littoralis_Contig135.62.1|Name=mRNA_P-littoralis_Contig135.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
MGSPPGSVETAGGGSGSGSGQASLMAALAAERDAAAELEAAEASAAERVA
REFREFFANIPRDYRDELGFTDVLVSVVRIRYRAGPQANAGAAGTTP
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mRNA from alignment at P-littoralis_Contig135:230400..232279+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig135.62.1 ID=mRNA_P-littoralis_Contig135.62.1|Name=mRNA_P-littoralis_Contig135.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1880bp|location=Sequence derived from alignment at P-littoralis_Contig135:230400..232279+ (Pylaiella littoralis U1_48)
GCGAAGTCGTCACGTGATGGCCGAGGGTGAGGGAGAGAGCGACAGGGCGG
GGGGGGGGCGGCAGAGAGAGAGATGGAGAGGGAGAGACAGAGACATACGT
TATAAATGTACTTTTTTCGATATAATGACGCATTGACTCGAACGTATTTG
TGCACCAAATAGAAAGGGTTACGTGTCCACACGTACTTTGATGCAGCAAC
AAGACACGAGACACAGACAGTGTTGGTGATTCGGCAACAATACGTAAGTT
TATGCTTTTCGTGTATCCTTGTTCATTCGTATCTCGGCTGCTGAGAGCCG
AACACACCACCTTCCCCGTTTTCAGGAGGCTCGCAGTGTCGCGAGTAGTG
CAGACCTTTGAAGTCACGACGCCAGGTGGGAACGCAAACAGCCATGTTCC
GTATGATGATACAGCGATATGTCGTCCCCCTGGTGGCATCTATGCACGCA
AGAAACAGAGGGCAACGTTAACCGATCATGCTTGTGTGTATCCATTTATT
TTGCTTTACTCAGGTCGATGGGGTCGCCTCCAGGCAGTGTCGAAACCGCC
GGGGGCGGCTCGGGGTCGGGGTCGGGGCAGGCGTCGCTGATGGCGGCGCT
GGCGGCCGAGAGGGACGCCGCCGCGGAGCTCGAGGCGGCAGAGGCGTCGG
CGGCCGAAAGAGTGGCCCGGGAATTCAGGGAATTTTTCGCCAACATCCCG
AGGGTGAGTGAGAGGTTGAAGTTGTGCGCGTGTGCGAGTACGGCATGTGT
GTGCGTGTGTGCTTCCCATACGGTGTGAGCATTGATCACACCAGCCACTG
CCTACTGAAAAGTCCGTGTCTTTCTCAACATGCCAACGCCCTGAATGCTT
CCTGAATCGTCTGTCCTAGAGACAGCAGGTGTAATGGTGGAAACATTTCG
AGACTAAGAGAAGGTCCTAGAATACTCTACATTTGTAAGGGTTTCACGTA
AGCGTAGAATTTGCGTTCTGGCTAAATAAGGAGGGAGGCGGGGCGACCAC
TGGCCATTGATTGGGTTAGTCTCATTCGCTGAATTCCCCACTTTTCCCTC
TAAGGTATATCCTGACTGTTGTCAATGTTCAGTAGTGCCGCTGGATAGCA
ACGATATTGTAGCATGTATCCGTTCACGTACGCGACGGAAGAAATACTGC
GGCGTAAGCGTACCGGGATCTACCAACTCGCAGGTAGTTCCACCGAATTT
CCGGATATCATCGGGTTCTAGAATTTTGTTTCTAGAAACGGTTTCAGAAG
GTTTGTAATCTAAAAGCGTTTCGTAGCCGTATCGAGACGAGACGGTGGTG
CCTCCTGCTTACTCTTTTTTTCTCCATCTTGTGGCGCCTAGACTGCTGCA
GTCTATCGTTCTCTACAAGTCTTTGTAGGCCGGAAGCGCCCCTTTCACAT
CAATACATTCCTGCTTCATTTGCAGTAGTAGCAGCGACTGCTGCCTGCAA
GCTGGCTACACCTGCCGGTGTCAGCCTTTGCCTCCTCGTACCGGAAACCC
AACGGAATGCCGACGTTATCGCGGGCTTGTGTCTCCTCACACACTCACAC
ACACATATATATATAGGGAATGCCGCAGCAGACAGGGATTTCCGCAGGTC
CTACTCATTCGCCACCCTTCAGATGTAAAGGTTAGCAGACAATGCACCGG
TACTTGGCATGTAATCCCAACCCAAGCCCAAACCCGTCTTTTTTGTTCTC
TACTTTCCTCCCCGGCTTCCCTTCAAGTAGCGCTTCGTCAAATTTAACCA
TAAATCACCACACTGACGAATCCAGGACTATCGCGACGAGCTGGGATTTA
CGGACGTCCTCGTCTCCGTCGTCCGCATCCGGTACCGCGCCGGGCCGCAG
GCCAATGCCGGGGCCGCGGGCACAACTCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig135:230400..232279+

>mRNA_P-littoralis_Contig135.62.1 ID=mRNA_P-littoralis_Contig135.62.1|Name=mRNA_P-littoralis_Contig135.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig135:230400..232279+ (Pylaiella littoralis U1_48)
ATGGGGTCGCCTCCAGGCAGTGTCGAAACCGCCGGGGGCGGCTCGGGGTC
GGGGTCGGGGCAGGCGTCGCTGATGGCGGCGCTGGCGGCCGAGAGGGACG
CCGCCGCGGAGCTCGAGGCGGCAGAGGCGTCGGCGGCCGAAAGAGTGGCC
CGGGAATTCAGGGAATTTTTCGCCAACATCCCGAGGGACTATCGCGACGA
GCTGGGATTTACGGACGTCCTCGTCTCCGTCGTCCGCATCCGGTACCGCG
CCGGGCCGCAGGCCAATGCCGGGGCCGCGGGCACAACTCCC
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