mRNA_P-littoralis_Contig135.60.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig135.60.1
Unique NamemRNA_P-littoralis_Contig135.60.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig135.60.1 vs. uniprot
Match: D8LSG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG2_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.980e-30
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 2 
Query:   92 MGAQYSTGAVSPDWKGWLEERCSLEQVRATYGDFRVLVSSRREDDGFFITHRDFLRVFADVGDFPPPGQ 298
            MGAQYSTG +S DWKGWLEERCSLE VR  Y +FR LVSSRR+DDGFFI HRDFL+VF DVG++PP GQ
Sbjct:    1 MGAQYSTGTLSADWKGWLEERCSLEHVRRIYNEFRALVSSRRDDDGFFINHRDFLKVFGDVGNYPPAGQ 69
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSG2_ECTSI1.980e-3076.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:218255..221109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size317
Hectar predicted targeting categoryother localisation
Exons2
Cds size225
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789622.6869173-UTR-P-littoralis_Contig135:218254..2183451680789622.6869173-UTR-P-littoralis_Contig135:218254..218345Pylaiella littoralis U1_48UTRP-littoralis_Contig135 218255..218345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789622.7048354-CDS-P-littoralis_Contig135:218345..2185131680789622.7048354-CDS-P-littoralis_Contig135:218345..218513Pylaiella littoralis U1_48CDSP-littoralis_Contig135 218346..218513 +
1680789622.7172518-CDS-P-littoralis_Contig135:221052..2211091680789622.7172518-CDS-P-littoralis_Contig135:221052..221109Pylaiella littoralis U1_48CDSP-littoralis_Contig135 221053..221109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.60.1prot_P-littoralis_Contig135.60.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig135 218346..221109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig135.60.1

>prot_P-littoralis_Contig135.60.1 ID=prot_P-littoralis_Contig135.60.1|Name=mRNA_P-littoralis_Contig135.60.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=75bp
MGAQYSTGAVSPDWKGWLEERCSLEQVRATYGDFRVLVSSRREDDGFFIT
HRDFLRVFADVGDFPPPGQRGRRAA
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mRNA from alignment at P-littoralis_Contig135:218255..221109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig135.60.1 ID=mRNA_P-littoralis_Contig135.60.1|Name=mRNA_P-littoralis_Contig135.60.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2855bp|location=Sequence derived from alignment at P-littoralis_Contig135:218255..221109+ (Pylaiella littoralis U1_48)
GGACAACAAGGGTCACGCCTTCTCGGGCGGGAATACACAGGGGGAGCGTC
CGTAGATATACCCTCGAGGTGCGTGGTCGGTGGCGTGATCCATGGGTGCG
CAATACTCCACCGGGGCCGTATCTCCCGACTGGAAGGGCTGGCTAGAAGA
GCGCTGCTCTCTCGAGCAGGTCCGGGCGACCTATGGAGACTTCCGGGTGC
TAGTATCTTCTAGGAGGGAAGATGACGGTTTCTTCATCACCCACAGGGAC
TTTCTCCGGGTAGGGCAGTCGCCTCGGTATTTCCTACTGTATGATATAAT
CTTGCACAGTTGTATCACATGCTTTGGAGGGTATACAGGAACTGTCAGCT
CAGGCAGTACCGGGTACCGCAGTACTGCTGTAATATACGTATGTTTCAAC
AGTATTGTTGTCCTTAGAGCGGGGGTCAACGGAAGGCCAAAAAAAACGAA
CTAGCGGAAACAAAAACGAAATAACTTCGTTCAGGAAAAAAAAAAAACTC
CATTTCGGTATTATCGCGGTTCTGCTGCGAGGAGCTGGAGCAGCGGAATA
GAAGAGATGACCCCAAAAATGATGTAAACCCAGAACGCGCGGGGCCCAAT
ATCAAATAACGCGGTGGAATGCATCGTGTCAGCGTGTGGGTATCATAGAC
GGCCGTGTGCTGTCTGTTGCACTGACTGGCGGGTATGACGGCTCGGCGCT
GTCTGCTGCGCTGCTGTAGTGTGTGGATTGGGCCTCGCTCTGTTCGAGTT
GGTGCCTGTTGCACCGCCGTGTACCGCAGTCGCAGTCTGTGTGAAGTAGT
TCGCTGCCTGGGAGGCTCATGGGCAAGCCTCCCAGGTTACCAAACTCCAT
GCATTTCGTTTTCGTTTTCGCAAAAAAAAAGGTCCGAAACACTTTATTTT
TGCGAAATCGAAAACGAAGGAACGCCTCCCCGGAGGTCGTTGAAACATAA
ACACGCCTCTTTCGTTTTTTTTTCCCGACCAATCAGAGCCCAATTTCGTT
TTCGTTTTCGCTATTTCGTTTTTTTTGGCCTTTCGTTAACACGGGCTCTT
ACAAGATGGCGTACCCGCTAAATAAGAAGGTTTTTTGAAGGCGGAGGTGT
CGACATGGATACTTCGAGGCACAGCAGTGCTGTGTTTGGGTTCGATACAA
GTATTTTTTACCTGTAGGGCCCAGGCCCCGTAGAACGATCAACTGTACAA
ATTCGTAGATGGTGACCAGATCATACTGCAGATTGTGAGCATACCGTTGC
ATGGTTTAAGATTTTATACGTTTGATTCCAACAGCAGTTATTTGGAGAGG
GTAAAGAGCCTGCTGTACCATGCCCGTGGGGTGCATTTTGCAGATGTGTG
CCGCAGGAGGAAGAATGAGGAGAATAATTCTTCTGCGTGAAGGCCATCAG
AGAGGCTAAACGAGAAGAAACCGCAGCATGCGTAGGTACTAGCGTATTAG
ACTATGACGAACATAGTCCTGTTTATAGTTCTAGGCTTTGTTGCTTGCCA
GCTCCAGGACGCCCTGCCAACCCGTTGGGTTTGGACCAACATAGATGGAG
ATGCAAACAACATTAACCCACATTTTGTGGCAAGGCATGTGATCGGTATT
AAATACTTCGAAGTACAAGTACAAGGTCGCCCTTCGGGAGGTCGGAGACG
GGGTCATCCCGGGGGCGTCGCAAGAGGACATCGTACTTGTACATCAATGA
GTGGGATTGATCTGGATACAATATTACTTGCACTTTGACATTGGAGGATT
AGGCATAATTAGCATTGACGATTCTCCGGCCTGGGATGGGGGCAGAGTTG
GAATTGAAGAGGCTGGTATCATCATCACGAAATAAAACGAAAACTTCAAT
AAAGAGGCAACAGACAACTTCGGAATACGTCAGAAATGAAGATTCCCGGG
ATCCCGCAGAGAGAGTTAAGAATTGACGATTCTCGGGCCCGGGATTGGGC
CGAGTGGAAATGTCAGGATTGAAGAGAGCTGTTGTTGTCAGCAGAACCAA
TACCGGTTAGGAATCTCAGTACACATTGTTTTAGTGATATCATATTAGTG
TGAGACTCATATGATACGAAGTTTGAAAATGAAAACAAAGCGATCAGTAG
CAGCGTCTTGGCGAGGAAATGATTGTCGTCTGCCATGACGGTGTTTATTT
TCATGTGTTTTCAATTTGTATTGTTCCATCGTAGAATGAGTTACACTTGT
TAAGTGTTCTCTTCCAGAGACATCACCGATATACCTCTTACATGGGAACA
CTTGTTGTGTGTGTTGTTTTGAGTGTGTCCCTCTGTTTTTTCATGTTACT
GGCACTGCCGCGGCGGTCCCTCTCCTTTTGAATGAATTTTCCACGATGTT
GATGGCTTTTGTCCGACAGAAAGCCTTGCCGTGAAAGAGAGCCAGTGTCG
GGCGACTTTGGCCGGGCACCAAACCTCCCACCAATGCCGGGCAAGCCCCG
GACCTCAACGATAATGTACCGACAGGTCCTGTGCATGCGCTGCAAAAAGA
ACCGCGATGAAGGACGCAGTGACGGCGGAGAAAATGTCTGTCGAGTACAA
AAGCACCAAACGATATACTTCGAAGTATATACATACAACCATCTAGCGTC
GTCCTAGTCCTGTCGTCACTAGCTTCGTAGCACACACATACATGTGCACT
CGCGGCAGAGGGTTGTGGGTGATCTGTACACAGCAGTTTATTGTAGGTGA
TCCAGAATCGGAACATCAACATATGTGCCTACGGCTGCGGAGATTTATAA
GAAATTACTCAATATTCTGAGCCGTGTTGTTTCCTACACCGCCCCAAGGT
GTTTGCAGACGTGGGTGACTTTCCACCCCCGGGCCAGCGGGGACGACGAG
CAGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig135:218255..221109+

>mRNA_P-littoralis_Contig135.60.1 ID=mRNA_P-littoralis_Contig135.60.1|Name=mRNA_P-littoralis_Contig135.60.1|organism=Pylaiella littoralis U1_48|type=CDS|length=225bp|location=Sequence derived from alignment at P-littoralis_Contig135:218255..221109+ (Pylaiella littoralis U1_48)
ATGGGTGCGCAATACTCCACCGGGGCCGTATCTCCCGACTGGAAGGGCTG
GCTAGAAGAGCGCTGCTCTCTCGAGCAGGTCCGGGCGACCTATGGAGACT
TCCGGGTGCTAGTATCTTCTAGGAGGGAAGATGACGGTTTCTTCATCACC
CACAGGGACTTTCTCCGGGTGTTTGCAGACGTGGGTGACTTTCCACCCCC
GGGCCAGCGGGGACGACGAGCAGCC
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