mRNA_P-littoralis_Contig135.54.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig135.54.3
Unique NamemRNA_P-littoralis_Contig135.54.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig135.54.3 vs. uniprot
Match: D7FUI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI2_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.620e-15
Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = 1 
Query:  439 LIVNFTTATGRRPPDRVDSIAIEHGKFLQGLRRLRRELLKKLQGKTYDNKKRGQRSLVCG-GGPESSPAS-NSSSLPILSLCRNHSGTIVRGEKTNRRHSIDADVVARALAKVDRAASSYDTRRIDNLRQADLSRV 840
            +IVNF+    R+       I+IEHG+F Q   RLRR+LLKK QG          +SL+ G  GPESS  S ++SSLP+LSL R+  G + R E  N   ++DAD + RALAKVDRAA SYD RR   L  +   R+
Sbjct:    1 MIVNFSKKRCRQGGS---IISIEHGEFSQAFLRLRRDLLKKEQGNGCGKTAHKPKSLIDGIRGPESSKTSRDTSSLPLLSLRRSLPG-MTRVEDGNLHRAVDADTINRALAKVDRAAWSYDPRRTVRLTSSAFGRI 132
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.54.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUI2_ECTSI1.620e-1546.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:205491..209822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1095
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_003810.1
Cds size831
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.54.3prot_P-littoralis_Contig135.54.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig135 207277..209807 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789622.5819492-UTR-P-littoralis_Contig135:205490..2056781680789622.5819492-UTR-P-littoralis_Contig135:205490..205678Pylaiella littoralis U1_48UTRP-littoralis_Contig135 205491..205678 +
1680789622.5965395-UTR-P-littoralis_Contig135:207215..2072761680789622.5965395-UTR-P-littoralis_Contig135:207215..207276Pylaiella littoralis U1_48UTRP-littoralis_Contig135 207216..207276 +
1680789622.6570103-UTR-P-littoralis_Contig135:209807..2098221680789622.6570103-UTR-P-littoralis_Contig135:209807..209822Pylaiella littoralis U1_48UTRP-littoralis_Contig135 209808..209822 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789622.6056871-CDS-P-littoralis_Contig135:207276..2074891680789622.6056871-CDS-P-littoralis_Contig135:207276..207489Pylaiella littoralis U1_48CDSP-littoralis_Contig135 207277..207489 +
1680789622.614766-CDS-P-littoralis_Contig135:207769..2080231680789622.614766-CDS-P-littoralis_Contig135:207769..208023Pylaiella littoralis U1_48CDSP-littoralis_Contig135 207770..208023 +
1680789622.6280198-CDS-P-littoralis_Contig135:208467..2085541680789622.6280198-CDS-P-littoralis_Contig135:208467..208554Pylaiella littoralis U1_48CDSP-littoralis_Contig135 208468..208554 +
1680789622.6364222-CDS-P-littoralis_Contig135:208902..2090381680789622.6364222-CDS-P-littoralis_Contig135:208902..209038Pylaiella littoralis U1_48CDSP-littoralis_Contig135 208903..209038 +
1680789622.647935-CDS-P-littoralis_Contig135:209666..2098071680789622.647935-CDS-P-littoralis_Contig135:209666..209807Pylaiella littoralis U1_48CDSP-littoralis_Contig135 209667..209807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig135.54.3

>prot_P-littoralis_Contig135.54.3 ID=prot_P-littoralis_Contig135.54.3|Name=mRNA_P-littoralis_Contig135.54.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=277bp
MAVPRQRILRSALDKAGEVALRLTLEVSAGVKAFDGPPLKPRDVKDLFLR
NFRVRVSTSEAEALIVNFTTATGRRPPDRVDSIAIEHGKFLQGLRRLRRE
LLKKLQGKTYDNKKRGQRSLVCGGGPESSPASNSSSLPILSLCRNHSGTI
VRGEKTNRRHSIDADVVARALAKVDRAASSYDTRRIDNLRQADLSRVTSP
RTFGGALLARFDVRVDPLEQSELVSLLQDEKGTVDIERFRTYFLGIIEEY
SRASENPKKGAFLPPLRAAIDSDRSL*
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mRNA from alignment at P-littoralis_Contig135:205491..209822+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig135.54.3 ID=mRNA_P-littoralis_Contig135.54.3|Name=mRNA_P-littoralis_Contig135.54.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4332bp|location=Sequence derived from alignment at P-littoralis_Contig135:205491..209822+ (Pylaiella littoralis U1_48)
AGGATCGAAAAGGTTCTTCGGAAATCCCAGAGTGCAGACAACGTACGCCC
TTTAGACCCCCAATGCCCAGCATCGTCTATAGCGAGAGCTACAAGATTGT
CCAACCTGTATGGCGTCAGTTTAACCACGAAGCTCGCACGAAAGGGGGCC
GGGGAGAGACCAAGCCGGAGAAGGCATCAACAACTCAGGTAATTGTGGTG
CCTATCTCTTGTCCAGCCTATGTCTCAGGTCTATCCTATGATTACTGTAC
ATCATTTATACGTACCTCATTTCCATCTCGTGTCCATCTCATGCCATTCT
CTATTCCATGTCACGCCCATCTCGTGTCCATACTGTCGCGTATTCCTCGT
GCCAATCGCATGTTCGCCTGCCTCATTGAAGGAGATTGATCGATCCAGAA
TGGCCGTAGTTTGCAGAGTTTCTGAATACGCACACGATAAGCCGTGAGGT
GAAAGTCTAGGGTATCCACCAGAAAAAAATTACGCTTTTAAAAACGTTTT
TGCTCAAATTCACGTCTTTCCAATTACGCCGTAATTTTAAAGCGTTATTT
TGCTCCAAGGAAACGCGTACTTTTTTCTCAGGAAAGGTGTGCTTTTTTTA
CGCTTTTGCTGTTTTAACCTTTCCGTTCGGATCTTCCTGGATGGTATGAA
CCAGCGGGAACAAGAGAGATGATATGAAATACTTGAGGTATGTATTGCTG
CTGTATGCACGCACGATGCACAGCTAGCTGCTAGAAAAAGGAAGCACACA
ACGATGCTCCCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTAGTG
TAGCACACCACGGGCAGAGAAAATATACGACGGGCATACCGCAGCAACCT
TTCACCCAAGGTAGCCACTTGTCCAAGTATGTATGCCAGCAAGGGTATAC
CCCTAGCACAGACGTGGTATGTGAGTCTGCTGTGCACATAGCTTGGTGGG
AATTTCTTCCTGTCTTCTTGGTGTTTCCCACACGATGATGACACGGCAGC
AGCTGCGAGCACCAGCACCAGCGCCACCACCACCCACCCGCAGCGGCGGT
CACAGAGACATGCATCTACCTGTCTGTCTGTATTATTTACTGAGTACTGT
CTATACTGCTGTTGGTTTGTGCGTGGGTGACGATGCGCTTTGGCCTCGAC
TTTCGCGGGGTGAAGCAGAACCGCTGCTACGGCCTAGTGTACGTAGTATG
TTGCTTCTGTGTCCAAGTAGTATCATACGAAGTACTAGACAACAATAATA
CAGCTATGACATGCGTATCTCCGTCAAGTAGAGAAACGACTCAAACAGAA
CACAAACGAACGACTCTTTGATACTTCGTACCATATGTGTTTGTATTTTC
CAACGACGACATAAAACGACTCTTTATGGTGGCCGCCAACTGCCAAGAGC
TACAAGCGGCCCGATTATGAAAAGCGTAAATTTCAACCGTCACTTGAGGA
AAAGCGTAAACCCAAAAGCGTATATTGAAAGACGTGTTCTGGTGGAGACC
CTATAGTATCCCCTGGAAACTTGCGGATGGAAATTAATGCCAAATATTGT
TTCCTAGGTGCGAGGTAGACTGCATGTCTTGGCAGCAACAAACGTGGTGT
AGAAAAGCGAAAACTGACGTGGAATTCAACGCACAAGTAATGAAACATGG
CCAACGGACGTCGGACGTAAAAAACGCACCCGCACAATGCAAATTTGCTC
TCGGCAGAAAATACCACAATGCCAGCACTGGCGTTAGCCCCGGCTCGTCG
CGGGAGGGGGACGACGAAGGAGGGTCGAAAAAGAAGATGGCGGTCCCCAG
GCAGAGGATATTACGCAGTGCCCTCGACAAGGCCGGCGAGGTCGCTCTGC
GATTGACCTTAGAGGTCTCAGCGGGGGTGAAGGCCTTCGATGGCCCTCCG
TTGAAACCGAGGGATGTGAAAGATCTGTTTCTGCGCAATTTCCGCGTGAG
GGTTTCAACCTCGGAAGCCGAAGCCTTGATTGTGAACTTCACCACCGCGG
TAATAAAAGTTTCGACATAATGGTAATCGGTCACATGCACCAAAGCCTCC
GGGAGACCGCGCCGTGTACGTTCAACTGTATTTGGGCTTCCGGAGAGAAC
ATGGACGGACGCGCTGCTTGGTCGAATTATCTATTTCAGTCTTTTTCCAG
CCTACCAGGAACGAACGTCCGGTACCTCATTCATCCGTTTCAAGAGAAAG
TTAACGTTTCTTGAATCGAATAGCCTTTTTCCGCCGGTTCCGATTGCATT
CGCTTTTTCTGCAAAAACAAACGCAAAAGACGGGGCGCCGCCCACCAGAT
CGTGTCGACTCTATTGCGATTGAACACGGGAAGTTTCTTCAAGGGTTGCG
GCGACTCCGGCGGGAGCTGCTCAAGAAGCTACAGGGCAAAACCTACGACA
ATAAAAAACGTGGCCAACGCTCTCTGGTTTGTGGAGGCGGGCCTGAGTCG
TCACCAGCAAGTAACTCTTCTTCCTTACCGATTTTGAGCCTCTGTCGAAA
TCATTCTGGGACGATCGTCCGCGGTGAGAAAACGTAGGAAAAAATTACAC
GACGCAAATTGCAAGCGATAGCACATTCCCACACAAACACCAGCGCCTCC
AAAACAAACAACACTAGTCTATATTGCAGTAAATTGCAGTATTTACATTG
TCCCAGAAAACGGAGGAATCGCTCTGCAATGCCCCATGCCGATTGATATC
AGGTTGCAATCACACGGACAGGCGGTGAAGTTTATTATCGTCCGCCACCC
TATGATACCATAGCGATGTTTTCATCTCCCGTCTATTTGTGTGATACCTG
AATACCTGATGGCTCTGACCGCAATGACGACACGTCTCGTCTTCTTCCAA
ACAGCCCATTCGTGAAGTTTCCTCTCCCATTGGTATTGTGGCAATATATT
GTCGTCTCCCGCGGTACATCAAAACTGACGATAGTGATACCAACGATGAT
GATGTGACTGAACCGCGCAGCATGTAGCAACCGGCGTCACTCGATAGACG
CTGACGTTGTAGCTCGGGCCCTGGCGAAGGTGGACCGTGCTGCCTCGTCA
TACGACACAAGAAGGTGGAAGGAATTAACAGTTGAAGAAAGACGCGGCAG
AAAAAAACGGCGTATGTGTAAGGTCAAACCCTTCCCGATACATGAAATGT
CATTAACATCCCTCTATAACCTATGCATACGTTTCTGCAGCACTCCCATG
AAAGGCACACCTGAAAAAAGAAGCGCGGTACGCGCCACTCTATGTGTAAT
AGCTCTCGTATCCGCACTTTCTGTAAACATTTGCCTCACATGAGTTCTTT
TTTCCTATTGGTCTCAAAACCCTCTCAGAATTAATGTGAATCAGGGCGCT
TGTTTGAGGGTGCTGAAGGGCTAAAACGTACCTTTGCATGTCGTTACACA
CACATGTGTCAGGATCGATAACCTGCGTCAGGCCGACCTAAGCAGAGTCA
CGAGCCCGCGAACGTTTGGGGGCGCTCTTCTCGCCCGCTTTGATGTTCGG
GTCGACCCTCTGGAGCAAAGCGAGCTTGTTTCACTCCTTCAAGACGAGGT
GAGAACATAAGCTATGGATAAACCAGGAGGTGTCCTCGCGGCTCCCATTG
TGACGGCGGCACAGGCACCGGCACCGGCTAGATTTGTTGATTGTATTTTC
GGGGAACTTTCTTCTGTTGTACAGAGCCGACCATCGACATGAATGCAAAA
ACGCCGCCGGGGTGGTAAACTTGAAATTCAGAGGACTGCCTCACGTAAAG
TTCTCTCTCTCCAGGCAAGTTGCGTATGTGGGATGAAATAATCAAGAGCA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGATCAGATCACACTTTC
TCTTCATCCCGTACCAACATTCAGACCGAGGAGGAGTTGAGAAACATACA
CACCGCGTCGATTTACACTAGGACTATCATGTACCCACTCAGAAAAAAGT
GCCACTTCCGTTCCCGATCGAAGGGGTGATTGTTTTATTCACCGGTCTTC
GTTGACAGACTCCTCCACTCAGGCCTGGTTCCCTTTTGGATGCTTTCACC
CACGGACCAACTCTTCGTCGTGTTTGATTCTGCAACCCTGCCCACGCCTT
CCCTGCATGTGCATTTCGGTGACCACCGCCACCAACAAAATGGCCGACGA
CAATGAATGGTGCGTGGACTCAAAAGAAGGGCACGGTGGACATCGAGCGC
TTTCGGACGTACTTTTTGGGGATCATTGAAGAATACTCTCGCGCCTCCGA
GAACCCCAAAAAGGGCGCTTTTCTACCGCCTTTACGAGCAGCAATCGACA
GCGACAGGAGCTTGTAGAAAGCAGGAGCCGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig135:205491..209822+

>mRNA_P-littoralis_Contig135.54.3 ID=mRNA_P-littoralis_Contig135.54.3|Name=mRNA_P-littoralis_Contig135.54.3|organism=Pylaiella littoralis U1_48|type=CDS|length=831bp|location=Sequence derived from alignment at P-littoralis_Contig135:205491..209822+ (Pylaiella littoralis U1_48)
ATGGCGGTCCCCAGGCAGAGGATATTACGCAGTGCCCTCGACAAGGCCGG
CGAGGTCGCTCTGCGATTGACCTTAGAGGTCTCAGCGGGGGTGAAGGCCT
TCGATGGCCCTCCGTTGAAACCGAGGGATGTGAAAGATCTGTTTCTGCGC
AATTTCCGCGTGAGGGTTTCAACCTCGGAAGCCGAAGCCTTGATTGTGAA
CTTCACCACCGCGACGGGGCGCCGCCCACCAGATCGTGTCGACTCTATTG
CGATTGAACACGGGAAGTTTCTTCAAGGGTTGCGGCGACTCCGGCGGGAG
CTGCTCAAGAAGCTACAGGGCAAAACCTACGACAATAAAAAACGTGGCCA
ACGCTCTCTGGTTTGTGGAGGCGGGCCTGAGTCGTCACCAGCAAGTAACT
CTTCTTCCTTACCGATTTTGAGCCTCTGTCGAAATCATTCTGGGACGATC
GTCCGCGGTGAGAAAACCAACCGGCGTCACTCGATAGACGCTGACGTTGT
AGCTCGGGCCCTGGCGAAGGTGGACCGTGCTGCCTCGTCATACGACACAA
GAAGGATCGATAACCTGCGTCAGGCCGACCTAAGCAGAGTCACGAGCCCG
CGAACGTTTGGGGGCGCTCTTCTCGCCCGCTTTGATGTTCGGGTCGACCC
TCTGGAGCAAAGCGAGCTTGTTTCACTCCTTCAAGACGAGAAGGGCACGG
TGGACATCGAGCGCTTTCGGACGTACTTTTTGGGGATCATTGAAGAATAC
TCTCGCGCCTCCGAGAACCCCAAAAAGGGCGCTTTTCTACCGCCTTTACG
AGCAGCAATCGACAGCGACAGGAGCTTGTAG
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