mRNA_P-littoralis_Contig135.51.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig135.51.2
Unique NamemRNA_P-littoralis_Contig135.51.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig135.51.2 vs. uniprot
Match: D7FUI0_ECTSI (Rab32C, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI0_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 3.380e-117
Identity = 174/243 (71.60%), Postives = 199/243 (81.89%), Query Frame = 3 
Query:  153 MSAATDASPVIKILVVGDAGVGKTSVIQRYINNSFGPKV-PTVGVDFFIKEVALDNGRSGSSSATTVRVQLWDIAGQDRAKKVNRVYFKGALGALIVYDISRPQTFDSAAKWKQELDASITLPNGRGLPAVLLGNKVDLEVAKVDVSYVDRFVQTHGFVAWSDVSAKDMSNAEFDISVACLVSRLLCDEELFGPGMRRSAAAFSKRVKERGTPPSGVHLGSRGLRLATAASGNGLTHSKGCCG 878
            MS+A + SPVIKILVVGDAGVGKTSVIQR++N+ F P   PT+GVDFFIKEVAL+  +S S   TTVRVQLWDIAGQDRA+K+NR YFKGALGAL+VYDISRPQTFDSAAKWKQELDA+ITLPNG  LP VLLGNKVDLEVAKVDVSY+D FV+TH FVAWSDVSAKD  N +F++SVACL+ +LLCDEELFGPGMRRSAAAFS R++ R          S+G+RLA +    G   + GCCG
Sbjct:    1 MSSAAETSPVIKILVVGDAGVGKTSVIQRFVNDEFSPTHRPTIGVDFFIKEVALNGDQSESFPGTTVRVQLWDIAGQDRARKMNRAYFKGALGALVVYDISRPQTFDSAAKWKQELDANITLPNGSSLPVVLLGNKVDLEVAKVDVSYIDSFVETHRFVAWSDVSAKDAINGDFEMSVACLIQKLLCDEELFGPGMRRSAAAFSTRLQAREQSAHHTGSSSKGVRLALSTEATGQASNNGCCG 243
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BLAST of mRNA_P-littoralis_Contig135.51.2 vs. uniprot
Match: A0A1V9YUT9_9STRA (Ras-related protein Rab n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YUT9_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.610e-51
Identity = 95/192 (49.48%), Postives = 132/192 (68.75%), Query Frame = 3 
Query:  153 MSAATDASPVIKILVVGDAGVGKTSVIQRYINNSFGPK-VPTVGVDFFIKEVALDNGRSGSSSATTVRVQLWDIAGQDRAKKVNRVYFKGALGALIVYDISRPQTFDSAAKWKQELDASITLPNGRGLPAVLLGNKVDLEVAKVDVSYVDRFVQTHGFVAWSDVSAKDMSNAEFDISVACLVSRLLCDEELF 725
            ++AA DA  V+K+LV+GDA  GKTS+I+RY++N F      T+GVDF +K V + NG       TT+RVQLWDIAGQ+  + +NRVY+K ALGAL+VYD+SRP TF+SA KWK+E+D  + LPN + LP +L GNK DL   +VD +++D F +T+GF  W D SAK+  N   D +   LV+ +L   ++F
Sbjct:    7 VAAAQDA--VVKVLVLGDAATGKTSIIKRYVHNVFSDHHKTTIGVDFALKPVTV-NG-------TTLRVQLWDIAGQEHFRALNRVYYKDALGALVVYDMSRPDTFESAIKWKKEIDTKVELPNKKPLPVILCGNKCDL-AGEVDRAFLDEFCETNGFAGWFDTSAKE--NKNIDEANKALVAAILAHRDIF 185
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BLAST of mRNA_P-littoralis_Contig135.51.2 vs. uniprot
Match: W2QJV6_PHYPN (Ras-related protein Rab n=3 Tax=Peronosporaceae TaxID=4777 RepID=W2QJV6_PHYPN)

HSP 1 Score: 177 bits (450), Expect = 2.690e-51
Identity = 106/242 (43.80%), Postives = 148/242 (61.16%), Query Frame = 3 
Query:  153 MSAATDASPVIKILVVGDAGVGKTSVIQRYINNSFGPKV-PTVGVDFFIKEVALDNGRSGSSSATTVRVQLWDIAGQDRAKKVNRVYFKGALGALIVYDISRPQTFDSAAKWKQELDASITLPNGRGLPAVLLGNKVDLEVAKVDVSYVDRFVQTHGFVAWSDVSAKDMSNAEFDISVACLVSRLLCDEELFGPGMRRSAAAFSKRVKERGTPPSGVHLGSRGLRLATAASGNGLTHSKGCC 875
            ++AA DA  VIK+LV+GDA  GKTS+I+RY++++F      T+GVDF +K V +        S TTVR+QLWDIAGQ+  + +NRVY+K ALGAL+VYD+SRP+TFDS  KWK+E+D+ + LPNG+ LP +L GNK DL+   VD  ++D F  T+ F  W D SAK+  N   D +   LV+ +L  +++F    R+S A      K+R              R  +AA+G     S  CC
Sbjct:    6 VNAAQDA--VIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVTV--------SGTTVRLQLWDIAGQEHFRALNRVYYKDALGALLVYDMSRPETFDSILKWKKEIDSKVELPNGKTLPVILCGNKCDLK-EYVDREFLDEFCNTNNFTGWFDTSAKE--NIHIDDAAKALVTGILQHKDIFE---RKSEA------KKRNDT----------FRPTSAANGGNANQSSWCC 215
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BLAST of mRNA_P-littoralis_Contig135.51.2 vs. uniprot
Match: A0A7S2V4T6_9STRA (Ras-related protein Rab n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4T6_9STRA)

HSP 1 Score: 176 bits (447), Expect = 5.100e-51
Identity = 86/164 (52.44%), Postives = 113/164 (68.90%), Query Frame = 3 
Query:  174 SPVIKILVVGDAGVGKTSVIQRYINNSFGPK-VPTVGVDFFIKEVALDNGRSGSSSATTVRVQLWDIAGQDRAKKVNRVYFKGALGALIVYDISRPQTFDSAAKWKQELDASITLPNGRGLPAVLLGNKVDLEVAKVDVSYVDRFVQTHGFVAWSDVSAKDMSN 662
            S V+K+LV+GD   GKTS+I+RY++N F      TVGVDF +K++ +          T VR+QLWDIAGQDR   + RVY+K A GA++VYD++RP TF+  +KWK+E+D  ++LPNG  +P VLLGNK DLE AKVD  Y+D F + HGFV W D SAK   N
Sbjct:    7 SLVLKVLVLGDPATGKTSIIKRYVHNFFSTHHKTTVGVDFALKQLHV--------RGTDVRLQLWDIAGQDRFGAIARVYYKDAFGAMLVYDVTRPPTFEMVSKWKEEIDTKVSLPNGEPIPVVLLGNKSDLEKAKVDTEYLDEFCKQHGFVGWFDTSAKTNQN 162
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BLAST of mRNA_P-littoralis_Contig135.51.2 vs. uniprot
Match: H3HAQ4_PHYRM (Ras-related protein Rab n=17 Tax=Peronosporaceae TaxID=4777 RepID=H3HAQ4_PHYRM)

HSP 1 Score: 177 bits (448), Expect = 5.370e-51
Identity = 95/192 (49.48%), Postives = 134/192 (69.79%), Query Frame = 3 
Query:  153 MSAATDASPVIKILVVGDAGVGKTSVIQRYINNSFGPKV-PTVGVDFFIKEVALDNGRSGSSSATTVRVQLWDIAGQDRAKKVNRVYFKGALGALIVYDISRPQTFDSAAKWKQELDASITLPNGRGLPAVLLGNKVDLEVAKVDVSYVDRFVQTHGFVAWSDVSAKDMSNAEFDISVACLVSRLLCDEELF 725
            ++AA DA  VIK+LV+GDA  GKTS+I+RY++++F      T+GVDF +K V + NG       TTVR+QLWDIAGQ+  + +NRVY+K ALGAL+VYD+SRP+TFDS  KWK+E+D+ + LPNG+ LP +L GNK DL+   VD  ++D F +T+ F  W D SAK+  N   D +   LV+ +L  +++F
Sbjct:    6 VNAAQDA--VIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVTV-NG-------TTVRLQLWDIAGQEHFRALNRVYYKDALGALLVYDMSRPETFDSVLKWKKEIDSKVELPNGKPLPVILCGNKCDLK-EDVDREFLDEFCKTNNFTGWFDTSAKE--NIHIDDAAKALVTGILEHQDIF 184
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BLAST of mRNA_P-littoralis_Contig135.51.2 vs. uniprot
Match: A0A1V9YVF5_9STRA (Ras-related protein Rab n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YVF5_9STRA)

HSP 1 Score: 176 bits (447), Expect = 6.720e-51
Identity = 88/183 (48.09%), Postives = 127/183 (69.40%), Query Frame = 3 
Query:  180 VIKILVVGDAGVGKTSVIQRYINNSFGPK-VPTVGVDFFIKEVALDNGRSGSSSATTVRVQLWDIAGQDRAKKVNRVYFKGALGALIVYDISRPQTFDSAAKWKQELDASITLPNGRGLPAVLLGNKVDLEVAKVDVSYVDRFVQTHGFVAWSDVSAKDMSNAEFDISVACLVSRLLCDEELF 725
            V+K+LV+GDA  GKTS+I+RY++N F  +   T+GVDF +K V ++N        TT+RVQLWDIAGQ+  + +NRVY+K ALGAL+VYD+SRP TF+SA KWK+E+D  + LPN + LP +L GNK DL  + +D +++D F +T+GF  W + SAK+  N   D +   LV+ +L   ++F
Sbjct:   12 VVKVLVLGDAATGKTSIIKRYVHNVFSDQHKTTIGVDFALKPVTVNN--------TTLRVQLWDIAGQEHFRALNRVYYKDALGALVVYDMSRPDTFESALKWKKEIDTKVELPNKKPLPVILCGNKCDL-ASDIDRAFLDGFCETNGFAGWFETSAKE--NTNIDEANKALVAAILAHRDVF 183
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BLAST of mRNA_P-littoralis_Contig135.51.2 vs. uniprot
Match: A0A7S2APD4_9STRA (Ras-related protein Rab n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APD4_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.580e-50
Identity = 90/203 (44.33%), Postives = 130/203 (64.04%), Query Frame = 3 
Query:  180 VIKILVVGDAGVGKTSVIQRYINNSFGPKV-PTVGVDFFIKEVALDNGRSGSSSATTVRVQLWDIAGQDRAKKVNRVYFKGALGALIVYDISRPQTFDSAAKWKQELDASITLPNGRGLPAVLLGNKVDLEVAKVDVSYVDRFVQTHGFVAWSDVSAKDMSNAEFDISVACLVSRLLCDEELFGPGMRRSAAAFSKRVKERGT 785
            V+K+LV+GD   GKTS+I+RY++N F      TVGVDF +K++ + N        T VR+QLWDIAGQDR   + RVY+K A GA +VYD+SR +TF++ +KWK+E+DA + LPNG  LP VLL NK D+   ++D + ++RF + HGFVAW + SAK     + D +   LV ++L  +++F    R       +RV  RG+
Sbjct:   27 VLKVLVLGDPATGKTSIIKRYVHNFFSNHHRTTVGVDFALKQLQVYN--------TVVRLQLWDIAGQDRFGAIARVYYKDAFGAFLVYDLSRQRTFETVSKWKKEIDAKVVLPNGHPLPVVLLANKCDIAGVELDAAELNRFCEDHGFVAWFETSAKTAH--KIDAAARFLVEKILSHQDIFNDKRRNQEDTTDRRVLSRGS 219
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BLAST of mRNA_P-littoralis_Contig135.51.2 vs. uniprot
Match: A0A8K1C4T0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4T0_PYTOL)

HSP 1 Score: 175 bits (444), Expect = 2.140e-50
Identity = 95/192 (49.48%), Postives = 133/192 (69.27%), Query Frame = 3 
Query:  153 MSAATDASPVIKILVVGDAGVGKTSVIQRYINNSFGPKV-PTVGVDFFIKEVALDNGRSGSSSATTVRVQLWDIAGQDRAKKVNRVYFKGALGALIVYDISRPQTFDSAAKWKQELDASITLPNGRGLPAVLLGNKVDLEVAKVDVSYVDRFVQTHGFVAWSDVSAKDMSNAEFDISVACLVSRLLCDEELF 725
            +SAA DA  VIK+LV+GDA  GKTS+I+RY++++F      T+GVDF +K V + NG       TTVR+QLWDIAGQ+  + +NRVY+K +LGAL+VYDISRP+TF+S  KWK+E+D+ + LPN + LP +L GNK DL    VD +++D F +T+GF  W + SAK+  N   D +   LVS +L   ++F
Sbjct:    6 VSAAQDA--VIKVLVLGDAATGKTSIIKRYVHDAFTEHHRTTIGVDFALKAVTV-NG-------TTVRLQLWDIAGQEHFRALNRVYYKDSLGALLVYDISRPETFESVIKWKKEIDSKVELPNNKPLPVILCGNKCDLS-GDVDRAFLDAFCETNGFAGWFETSAKE--NKNIDEAAKALVSSILEHRDIF 184
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BLAST of mRNA_P-littoralis_Contig135.51.2 vs. uniprot
Match: A0A836CJ20_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ20_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.810e-50
Identity = 94/188 (50.00%), Postives = 129/188 (68.62%), Query Frame = 3 
Query:  153 MSAATDA-SPVIKILVVGDAGVGKTSVIQRYINNSFGPKVP-TVGVDFFIKEVALDNGRSGSSSATTVRVQLWDIAGQDRAK--KVNRVYFKGALGALIVYDISRPQTFDSAAKWKQELDASITLPNGRGLPAVLLGNKVDLEVAKVDVSYVDRFVQTHGFVAWSDVSAKDMSNAEFDISVACLVSRL 704
            M++++DA +P +K+LV+GD+  GKTS+I+R+    F   +  TVGVDF +KEV +            VRVQLWDIAGQDR+    +NRVY++GA GALIVYDI+RP TFD  AKWK +LDA + L +G+ LPAVL+GNK DLE+A VD  +++R+    GFV W D SAKD  + EF  +V+ L+  +
Sbjct:    1 MASSSDAPAPTLKLLVIGDSASGKTSLIKRFCLGDFDEDLQATVGVDFTLKEVQI--------LGLNVRVQLWDIAGQDRSGGGTMNRVYYQGACGALIVYDITRPATFDGVAKWKADLDAKVLLEDGKSLPAVLIGNKKDLEIAIVDGDFMNRYCGESGFVTWKDTSAKDPEDTEFQSAVSVLIEEI 180
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BLAST of mRNA_P-littoralis_Contig135.51.2 vs. uniprot
Match: A0A7S2S186_9STRA (Ras-related protein Rab n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S186_9STRA)

HSP 1 Score: 175 bits (443), Expect = 3.300e-50
Identity = 98/237 (41.35%), Postives = 140/237 (59.07%), Query Frame = 3 
Query:  174 SPVIKILVVGDAGVGKTSVIQRYINNSFGPKV-PTVGVDFFIKEVALDNGRSGSSSATTVRVQLWDIAGQDRAKKVNRVYFKGALGALIVYDISRPQTFDSAAKWKQELDASITLPNGRGLPAVLLGNKVDLEVAKVDVSYVDRFVQTHGFVAWSDVSAKDMSNAEFDISVACLVSRLLCDEELFGPGMRRSAAAFSKRVKERGTPPSGVHLGSRGLRLATAAS--GNGLTHSKGCC 875
            S V+K+LV+GD   GKTS+I+RY++N F      TVGVDF +K++ + N          VR+QLWDIAGQDR   ++RVY+K ALGA +VYD++RP TFD+  KWK E+DA + LPN   LP VLL NK D+E  K+D   +D+F + HGF+AW + SAK  ++ + D +   L+  +L  E++           F+++ K+R        L  R  R A+A     +    S GCC
Sbjct:    6 SQVLKVLVLGDPATGKTSIIKRYVHNFFSNHHRTTVGVDFALKQLTVRN--------QLVRLQLWDIAGQDRFGAISRVYYKDALGAFLVYDLARPATFDTVVKWKGEIDAKVVLPNHEPLPVVLLANKCDIEGVKIDSDALDKFCEEHGFIAWFETSAK--TDHKIDAAARFLLENILEHEDI-----------FAEKAKQRQRQEQNDPLRLRAQRSASAGEQQDDAFYASAGCC 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.51.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUI0_ECTSI3.380e-11771.60Rab32C, RAB family GTPase n=1 Tax=Ectocarpus silic... [more]
A0A1V9YUT9_9STRA2.610e-5149.48Ras-related protein Rab n=1 Tax=Thraustotheca clav... [more]
W2QJV6_PHYPN2.690e-5143.80Ras-related protein Rab n=3 Tax=Peronosporaceae Ta... [more]
A0A7S2V4T6_9STRA5.100e-5152.44Ras-related protein Rab n=1 Tax=Fibrocapsa japonic... [more]
H3HAQ4_PHYRM5.370e-5149.48Ras-related protein Rab n=17 Tax=Peronosporaceae T... [more]
A0A1V9YVF5_9STRA6.720e-5148.09Ras-related protein Rab n=3 Tax=Saprolegniaceae Ta... [more]
A0A7S2APD4_9STRA1.580e-5044.33Ras-related protein Rab n=1 Tax=Dictyocha speculum... [more]
A0A8K1C4T0_PYTOL2.140e-5049.48Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A836CJ20_9STRA2.810e-5050.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2S186_9STRA3.300e-5041.35Ras-related protein Rab n=1 Tax=Rhizochromulina ma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:191742..196879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUI0
Preferred nameRAB32
PFAMsRas
Model size943
Max annot lvl2759|Eukaryota
KEGG koko:K07918,ko:K07923,ko:K07976
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000323,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005764,GO:0005768,GO:0005769,GO:0005773,GO:0005776,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006856,GO:0006873,GO:0006885,GO:0006996,GO:0007005,GO:0007033,GO:0007040,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008055,GO:0008057,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009605,GO:0009894,GO:0009987,GO:0010256,GO:0010506,GO:0010876,GO:0010883,GO:0010941,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019748,GO:0019867,GO:0019882,GO:0019915,GO:0021700,GO:0022607,GO:0023052,GO:0030003,GO:0030004,GO:0030139,GO:0030154,GO:0030641,GO:0030659,GO:0030742,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0031984,GO:0032438,GO:0032482,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0033036,GO:0033059,GO:0033060,GO:0033162,GO:0033363,GO:0034613,GO:0035556,GO:0035639,GO:0035646,GO:0035650,GO:0035651,GO:0036094,GO:0036211,GO:0036461,GO:0042440,GO:0042441,GO:0042470,GO:0042592,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043412,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043687,GO:0044085,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044840,GO:0044841,GO:0044877,GO:0045009,GO:0045184,GO:0045335,GO:0045851,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046907,GO:0048066,GO:0048069,GO:0048072,GO:0048753,GO:0048757,GO:0048770,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0050931,GO:0051179,GO:0051234,GO:0051235,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0060155,GO:0065007,GO:0065008,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0080171,GO:0090382,GO:0090383,GO:0090741,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098805,GO:1901214,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1903232,GO:1905952
Exons7
Evalue1.34e-119
EggNOG OGsKOG4423@1|root,KOG4423@2759|Eukaryota
Ec32 ortholog descriptionRab32C, RAB family GTPase
Ec32 orthologEc-21_003790.1
DescriptionBLOC-2 complex binding
Cds size729
COG categoryE
BRITEko00000,ko04031,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.51.2prot_P-littoralis_Contig135.51.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig135 191804..196727 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789622.3037333-UTR-P-littoralis_Contig135:191741..1918031680789622.3037333-UTR-P-littoralis_Contig135:191741..191803Pylaiella littoralis U1_48UTRP-littoralis_Contig135 191742..191803 -
1680789622.4439433-UTR-P-littoralis_Contig135:196727..1968791680789622.4439433-UTR-P-littoralis_Contig135:196727..196879Pylaiella littoralis U1_48UTRP-littoralis_Contig135 196728..196879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789622.3165274-CDS-P-littoralis_Contig135:191803..1919451680789622.3165274-CDS-P-littoralis_Contig135:191803..191945Pylaiella littoralis U1_48CDSP-littoralis_Contig135 191804..191945 -
1680789622.3276954-CDS-P-littoralis_Contig135:192430..1925381680789622.3276954-CDS-P-littoralis_Contig135:192430..192538Pylaiella littoralis U1_48CDSP-littoralis_Contig135 192431..192538 -
1680789622.337339-CDS-P-littoralis_Contig135:192955..1930291680789622.337339-CDS-P-littoralis_Contig135:192955..193029Pylaiella littoralis U1_48CDSP-littoralis_Contig135 192956..193029 -
1680789622.3506958-CDS-P-littoralis_Contig135:193467..1935421680789622.3506958-CDS-P-littoralis_Contig135:193467..193542Pylaiella littoralis U1_48CDSP-littoralis_Contig135 193468..193542 -
1680789622.3934512-CDS-P-littoralis_Contig135:193882..1939601680789622.3934512-CDS-P-littoralis_Contig135:193882..193960Pylaiella littoralis U1_48CDSP-littoralis_Contig135 193883..193960 -
1680789622.420779-CDS-P-littoralis_Contig135:194266..1944321680789622.420779-CDS-P-littoralis_Contig135:194266..194432Pylaiella littoralis U1_48CDSP-littoralis_Contig135 194267..194432 -
1680789622.433577-CDS-P-littoralis_Contig135:196641..1967271680789622.433577-CDS-P-littoralis_Contig135:196641..196727Pylaiella littoralis U1_48CDSP-littoralis_Contig135 196642..196727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig135.51.2

>prot_P-littoralis_Contig135.51.2 ID=prot_P-littoralis_Contig135.51.2|Name=mRNA_P-littoralis_Contig135.51.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=243bp
MSAATDASPVIKILVVGDAGVGKTSVIQRYINNSFGPKVPTVGVDFFIKE
VALDNGRSGSSSATTVRVQLWDIAGQDRAKKVNRVYFKGALGALIVYDIS
RPQTFDSAAKWKQELDASITLPNGRGLPAVLLGNKVDLEVAKVDVSYVDR
FVQTHGFVAWSDVSAKDMSNAEFDISVACLVSRLLCDEELFGPGMRRSAA
AFSKRVKERGTPPSGVHLGSRGLRLATAASGNGLTHSKGCCG*
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mRNA from alignment at P-littoralis_Contig135:191742..196879-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig135.51.2 ID=mRNA_P-littoralis_Contig135.51.2|Name=mRNA_P-littoralis_Contig135.51.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5138bp|location=Sequence derived from alignment at P-littoralis_Contig135:191742..196879- (Pylaiella littoralis U1_48)
GTGTTTTATATGTTGCGGAGGAACTGTAACGTATGTGGGGAACTGCCGTG
TGAACTGTCAACTGCTGTCTTTTGTGTCTGCTACACGTACTGCTGTACGT
GTTGTTCAACGCCAGTGAAGCACATGAATGCGGCGTCATCGCGTATGTAT
CCATGTCAGCGGCCACGGATGCCTCGCCTGTGATCAAGATTCTCGTAGTA
GGCGATGCCGGCGTCGGAAAAACGAGCGTTATTCAGAGGTGAGGGATTCG
CAAACAGAGAAAATTCGATGCCGTTGAAAATTTGGTCAACTGAGGAGGGA
GCGAACCATTTGCAGCAAAGATAGACCCCGGTGTTGATTTGGGATAGCCG
GTAAGCATCCTTATCGTTTGGGAAAGTGTGTTTCGGTTCTAATGAGGCCG
TGAAAAAGGCTGCACCAGTTTATAAAGCAAAAACCTCGACGGAGTATCAC
GGCTAAAAACATTAATCTGGTGTCGAAAATCATGAGATCACCAGCTCAGT
TTACGGAGGACCAGGTATTATTTATCGATGCATTTGGGGATAAGGGTGCG
CGTTGCGAATGAACCGACGTGTTCGCCCTACCTATGGTCGCGTGGCGCCT
GCGTGATCCTCGTTGTTGGATTGCCCGCGCTTTCCCCGTATACCACTGGC
AATTCGTCACAGTCGCTCAGCTCTGCGGGATATCCGATGGTGTTGTTTGT
CACACGATGGACATGCAAAAGTGCTAAAATGAACGTTGGGTCTACTTTTT
CCTGAAGTACTGAAGTGCTTCGATGCAGAAGTTTTGGACGTGAGTTTATC
CTCGCCGTTGGATGTGCGTGTATGTTTATGTGTGTATGTTTTATGTGTGT
GAGTATTCGTCATTTATTGCATTCGTCCATCTATTATTTTACGCACATTG
AGCGCGCTGCCGTTCGTTGAGATAGATGTTTTGAAGAAAATGAGCCTCTT
GGACGATGACCAGAAACTGAGAGTGTAAGTCACAACTCAATCTGGGCACT
GGGCTACAAAACAAGAAAACCCGCACAGGACGGATCAATGCTCTAAAGAG
GCACAAGAAATAAAAAAGTGCAGAGGTAAATATGTGTGACGGAGCGCGCG
GGGAACACATCACCTCCGATCTCCTACAGGTGCACTCCTGAAAGTGCTTG
TGTGTGTGTGTGTCGGGGGCTGGGGGTGCTTGGTTGCGCATTGGCCGACC
CTAGATCACTTGCTTCGAAGGAACAACTACCACGACGACCGCGTAATCCT
GGACGCCAACGTATGCATGCCTAGCATGAAAGGCCGTCGGAGGCGTACCC
CGAAGATAAACGCCGTTGGGGTGTGAATTCTGCTAGAGGTCGACGAAGTG
AAGCGGTCAGGAAGTAACCCCAGAAAAAAAAACGCCCAGTGTTCGCAAGT
ACGAAGCTGTTGGTATGCTTGGTGCATGGGTGACGGTGGCATCTGCTGTC
TCTTTAGACTCGCTGTTGATGTCTCGGTCGTTTCTTGTTCCAGTTTTCAC
CTCTGGGGGGTAACCTTTGGTTGGCACTTTGCGGTTTTCTTACTTTGTTG
TCGGTTTGGTGTGCTTTCGCACAGCAAGGAACTTTTGATGTAAGAGCAAG
GCAAGAAAAAAAAAAAGAGCAGAAACATGTTAAAAGTTCATAAAATGAAG
GGTCCGGTAATCCAGAAAACGATTGCTAATAAGACGTACAGCCACGTTAC
CGGTCGAAACGATGGTCTACATAGTGGTTCCCTCGTGAACCTGCTAGCAG
TAGGGTCGCAGGTCCGTTTCTCTCTGAGGGTGTTTTTCTGCGACTTTACA
GCGGAAAGCGATTTCCTCGTGAGTAAGCAAGAAAAGAGGGGAGGGGTTGC
TGAACCCTTCTCGCATTAAACGTAAAAGGCAAGCACCGTAGGAGCAAAGG
TGTGGGCAACAAAACAAAATATAAAATACAAGCTCATGTGTGACCTTCCT
CCTGTGTGACCCCGGCTGAGCGTCAAGGACATGACCGGAAAGGTGTACAG
ACTGGCGCAAGAAATATGGGAACACACACACACGTAGCCTCGATCTGATT
CGACGCGAACAACTTCCACGTGCGAAACTAGTCACGGAAGGGGTTCTACA
CCGATGCCGGGCTGCTCCGTTGTCCAAACCGCCTGCTTTTTGACGAGCGC
TGTACGCGATTCCGCAACCAGGGAATATAAATATTGGCAAAGATTATTTG
CCTGCCTGACGGTTGTACATCAAAATGACGAGTTGGCTCCGTGTGCAACT
GGCAAAACTCGACGGGTCTCTTCTACAGCCGGTTGCACGCCTCCGTGCCG
GGAATCTGGACGATAGGCATCAAAATTGTAGATCTTGCTCACTGTTTGGT
ACTCCGCGATAATCGTCGAACATGCCTGCAGTACTGCCATAATTCCAGTC
CCTCGCGTTACCCTTGCCCCCCCGCCGCCATCTCATGGCGCCCACAGATA
TATTAATAATTCGTTTGGGCCTAAAGTTCCCACGGTTGGGGTGGACTTTT
TCATCAAGGAGGTAGCTCTCGACAATGGCCGGAGTGGGTCTTCTTCGGCC
ACAACCGTGCGTGTCCAGCTGTGGGACATCGCGGGACAAGACCGGGCAAA
GAAAGTGAACAGAGTGAGTGAGGGGGAGGGCTTCAGCAAGATGAAATTTA
GCCGACCACTCCTCCTGGGCGGTCTTGCCACAAATGTACGATGTCAATGA
AGTACACCCCCGTCTGCACTACAGGGTTTACACGCGATGCGTATTCTCAC
CATTGCTGTCAGGCGCTTTCATGCGTCTTCAGCGTACGAGGTCGAGGATA
AACTGAGAAATCCTCGAATATTGCCCGTCACGGAGTGGATAATAGTCTCT
GCAAAACTCGCCAAATAAATGCACTGCTGGGTGTGTGTGTGTATTTTCTG
TCGACAACCGCCCGACAAGGTATACTTCAAGGGGGCGCTCGGCGCCTTGA
TCGTGTACGACATTTCTCGTCCACAAACGTTCGACTCCGCCGCAAAGGTT
AGCAGTGTAGAGGATGTGTACGAAGGCAAACATTTCAGCGGCATCTCGTT
AGCTACTGACTTGACAAAGTGCTCCCGCAGGACAGCTGAAAAGACTACCC
GCCCAATTATTCGACCGTCCTTGGGTAGTAGGTGTGGTCAGCTTGACGGA
CCAACAGAACCAACCTCCGGCACAGCGTATGTACGGTGTGCGTCTTTCAT
ACTGTGCCGGATTCACGGACACCGAGGAGTACCACGTTGGACAAAATAGA
ATGTGAGGTGGTTTTGTCAGTAAAGGGCCCCCTTGCGTCCCACAGGAATG
TCCTTCGTTGCACAAAATGCGTACCTTTTCCGCTCAGTGGAAACAGGAGC
TGGACGCCAGCATCACTCTTCCAAACGGACGTGGCTTGCCGGCGGTCCTT
CTCGGAAATAAGGTATCGGCACGGAGAAGCCATACACTCGCGATGCAATG
TCCCCTCGGTAAAGAGACCGCGACTGCTTGTCCTGATGTGCCTACCTTGT
ACGGGTGTTAGCATTACCTCTCAAAATTTCGCGTTTTAGTGGACTGCGCG
CTCACGCAGCCAATCGGCCCGAGTGATGTTAGTGAGGATCACGCTCTCAT
TACTCTACGGGCCATGTGAATTTGATAGAGATATTTGTTTCGTTTGGATG
TTGAGAAATGTTAGTGTACTCGTGATTGTTGCAAGAACAACAACAACAAC
AGCAACAACAACAACAACAACAACAACAGGTGGTTCTGCAATCGGGACCA
CATTAGGCAAATATTCGTATAACGGTCAAATATCGCTCGCCAATGCTGCA
GCACCAAGAAACCCTCACTGAACATTTTTTTCACGACGTATTCCGGTCAG
GTCGATCTCGAAGTGGCGAAGGTGGACGTCTCCTACGTCGATAGATTCGT
CCAAACGCACGGGTTCGTCGCTTGGTGAGATAAGGCATAAGGTCTCGGAA
GCTTGTGTCATGAGACCGCGTACTAGGTTCAGCCCTGTCAGCATTAGCCA
ACACTGCCTTGCGAGGGCGGAGCCACGATGACAATCAAATACTACTGTAG
TGATAGCTCGAAAGGCGGCGGGTTATGCTGCAGGTCGCGAACAGTATTTT
GTTGTGAAGCCCTGTGCATCCGCCGAGTCCTGCCGTGTACTCCCAGACGT
ACGTAGAACTGCGTGGGTGCACTGCTGTCTTGTTCCGTTCTGTGTAAAAC
TCCCACTTGGTTTGGGTGGTCATTGCCCAACATTTATCTTGCCTCTTTCT
GTCTCTGCCCCTCTCACTGTGTCTGTCTGTCTACCTGTCTCTCACTGTCT
CTCTGTGTCTCGCTGTCTCTCTCTGCCACCCTTTCTATCAGGAGCGACGT
ATCGGCGAAAGACATGAGCAACGCCGAATTCGATATATCCGTCGCGTGTC
TCGTAAGCAGGCTTCTTTGCGACGAGGAGCTTTTCGGGCCTGGCATGAGG
TATCTATATACATACTTGAAGTATGCTTATATTTTGAGGCTGAAATGACA
CGGGAAGGTCATTTGCTGACCCGCCCTTCCTGACCGCCGATAGATAGTAC
AGCAGCAGCTTCTTTCCTGCTTCACTCCGTTGTCGGAGATTCAAAAGGTC
TGAAAAACGATGTTCTCATACAGAGTTTCATACGTCTACCGACAGCGTTT
CAGGCGCCCTTGCCACCCACCCGGCACTCACCTCCCCTACCCACATCACC
TGTACAAGTATGCTGTATCCTTTTGTGCGCCCCATCTTTCTGTTTTCAGC
CGCCCGTACTTGTACTCTGTTGGTCTTTTGCCGCAACCCTCAAATTCAAA
TGCCACCTCTCTATCTGCACAGTTTTGTTTTACTCTTTCGTCGCACGGGC
CTTTTACCCCAGTCCCCTCGCCTCCCTCTGTCCCCCCTCTTTTACCTCAC
CTCCTTTTCTCTCTCTCCGCCGCAATGATATAAGGCGAAGCGCTGCAGCA
TTCTCGAAGAGAGTCAAAGAAAGAGGTACGCCACCGAGCGGCGTGCACTT
GGGGTCTCGGGGGCTGCGTTTGGCGACAGCGGCGTCTGGAAATGGTTTGA
CACATAGCAAAGGCTGTTGCGGGTGAAATACTTCGAAGTATTACTATATT
GTCTGTGGGCCCCGCTGTGTAAACGATACCACAACTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig135:191742..196879-

>mRNA_P-littoralis_Contig135.51.2 ID=mRNA_P-littoralis_Contig135.51.2|Name=mRNA_P-littoralis_Contig135.51.2|organism=Pylaiella littoralis U1_48|type=CDS|length=729bp|location=Sequence derived from alignment at P-littoralis_Contig135:191742..196879- (Pylaiella littoralis U1_48)
ATGTCAGCGGCCACGGATGCCTCGCCTGTGATCAAGATTCTCGTAGTAGG
CGATGCCGGCGTCGGAAAAACGAGCGTTATTCAGAGATATATTAATAATT
CGTTTGGGCCTAAAGTTCCCACGGTTGGGGTGGACTTTTTCATCAAGGAG
GTAGCTCTCGACAATGGCCGGAGTGGGTCTTCTTCGGCCACAACCGTGCG
TGTCCAGCTGTGGGACATCGCGGGACAAGACCGGGCAAAGAAAGTGAACA
GAGTATACTTCAAGGGGGCGCTCGGCGCCTTGATCGTGTACGACATTTCT
CGTCCACAAACGTTCGACTCCGCCGCAAAGTGGAAACAGGAGCTGGACGC
CAGCATCACTCTTCCAAACGGACGTGGCTTGCCGGCGGTCCTTCTCGGAA
ATAAGGTCGATCTCGAAGTGGCGAAGGTGGACGTCTCCTACGTCGATAGA
TTCGTCCAAACGCACGGGTTCGTCGCTTGGAGCGACGTATCGGCGAAAGA
CATGAGCAACGCCGAATTCGATATATCCGTCGCGTGTCTCGTAAGCAGGC
TTCTTTGCGACGAGGAGCTTTTCGGGCCTGGCATGAGGCGAAGCGCTGCA
GCATTCTCGAAGAGAGTCAAAGAAAGAGGTACGCCACCGAGCGGCGTGCA
CTTGGGGTCTCGGGGGCTGCGTTTGGCGACAGCGGCGTCTGGAAATGGTT
TGACACATAGCAAAGGCTGTTGCGGGTGA
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