mRNA_P-littoralis_Contig135.48.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig135.48.2 vs. uniprot
Match: D8LSG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSG5_ECTSI) HSP 1 Score: 634 bits (1636), Expect = 4.130e-207 Identity = 514/1110 (46.31%), Postives = 604/1110 (54.41%), Query Frame = 2
Query: 437 GEPHRDTATFEELGVLGVDGMRTAVATDKARRVYHAPRR-FEQPTETFVRKTGMRDRGPPGYEYNNTEHLSVSATVKPGAPGSAVFLAASDGRGTAGLPGVRVRSYPTSPTRDDRLEAAQKAAQTRADEARRLAVKSRRDRKVTLAKPATSSRANS-----GHPNKPGGPGGSWIPQSRLATLVIRPPRSRSLEGQARREALEAKARAIAASPREGRPDAEAYRN-PGGGNRRKLKRGLATAEKKGMYHGIKIPLDAFEKPFAGGSQLDVLPGRLESLVFPERYVDWPKEDAHLPALALDVRSSPIRHAVAFRSNQPRIVCYDPQRETRGWDGPGAFEWDERSDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNGSPSGNGRVSSGXXXXXXXXSRGRSAKGVRPRGMAVREPDRLSPVFREGSSGFGTPTQTNVRGFALSPSTSAA-AGVXXXXXXSDATEMGRDNNRXXXXXREQGGRGNVGGSE---AANRAQGGRRKKPKAHWMFLLPGKEAQPVMSTEGWGGPGAYAIEQETGLRVKEPGRRSPVFLEGSGGKRGRENARRERENWNSRSPPPPSRGN-PEGLPASPSERRR-SPGTPDILANWSSPHLDYTPPEPKTVAHGVRRQGPNRFGASFLSVADRFDPDGVPRGFRTATTPAGLGPGAGERSNGGDIAGPVERYDLVSSRQQPPASNTWLGTSIRFGLPYNPSLGNENATATATHHPQQQRHSHRSSSPSLPSPLRQQPLREESATAACDACRTLTSGGGSNXXXXXXXXGSSEGVDAATPLSLAAVGQRVGTTPKLVFRPRRAVVPAAKAAALAAAATVAAGLARSWTGRGADSDGVVSVGGGGGLGADRDVELRPVCIEFRANSEKVPERNPTTSPKAAAAAKSVVLSAATRPGPQLNPAVADGGLIAAAHSXXXXXGNDQRRWHQHKRPKKPNNERLSASSGVNASSFLLATGGGSVNHRKRSTLG---PCSVFPSVVA---GMTEEGLAAAELSMAAAAVS-AESSADRDRGFIRTVGRAKRGPCMWTLCESRETD-------GWATSEKGTRLRRRSGGSEDFG--RVP--FWEAEAAGGLLGPGETRVLVC 3673
G PH T F+ELGVLGVDG R A VYH P R FEQPTETFVRKTGMRD+GP GYEYNNTE+LSVSA VKP PG PTRDDRLE A KAAQTRADEAR++A+KSR DR V A PA ++++ + G NKP SW + T +IRPPRSRSLE QA REA+EAKA+A+AASPREG+PD E R GGGNRRKLKRG A ++K+ MYHGI +P + FEKPFAGG+++D LPGRLESL+FP+RYVDWPKEDA LPALALDV+ SPIRHAVAFRS QPRIVCYDPQRETRGWDGPGA+EWD+R D++XXXXXXXXXXXXXXXXXXXXXXXXXXXX G G RPRG+AVR+P R SP FREGSS F +PTQTNVRGFAL+PS+ A D T G + XXXXX S A +A GG R+KP+ WMF PG+E +P ++T GW GPGAYAIE TG+RVKEPGR+SPVF EGSGGKRGR+ RRERE S S G PEG P E R SPGTP+ LA+WSS + +++PP PK SNGGD+AGPVERYDLVSSR+QPP + S+G NA D T GG ++ SEG A PLSLAAVG R+ ++ K R V+PAA AA AGLAR+W GR AD+ G GG ADR LR + RAN + P + A LS T GP + G AA S +R+ +H+ + +S+ + + A GGG R S G P S P A MTE GLAAAE MAAA + A ++A ++ IRTVGRAKRGPCM TL S + T G L+ ++ + FG R P FWE E AGGLLG GET+VL C
Sbjct: 17 GVPHDQT--FDELGVLGVDGSRMACG------VYHPPPRGFEQPTETFVRKTGMRDKGPLGYEYNNTEYLSVSAAVKPCTPG---------------------------PTRDDRLEDAGKAAQTRADEARKIAMKSRWDRHVLRANPAKTAKSRTSTNSPGSTNKPSAL--SWKQSTGSLTPIIRPPRSRSLEDQALREAIEAKAQAMAASPREGKPDPETQRRLRGGGNRRKLKRGPAASDKRDMYHGIAMPGNTFEKPFAGGNEVDALPGRLESLIFPQRYVDWPKEDASLPALALDVQRSPIRHAVAFRSKQPRIVCYDPQRETRGWDGPGAYEWDDRPDDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKSAEKG---------------GARPRGIAVRDPGRPSPAFREGSSAFLSPTQTNVRGFALAPSSKRVDAAAAAAAEGRDVTATGAEXXXXXXXXXXXXXXXXXXXSARSAAKKKAHGGHRRKPQTLWMFKPPGREPEPAVATLGWEGPGAYAIEIGTGVRVKEPGRKSPVFREGSGGKRGRDVDRREREKMVSPGGVSSSAGPMPEGFAVGPGENRMDSPGTPESLASWSSLYPEFSPPAPKM-------------------------------------------------SNGGDMAGPVERYDLVSSRRQPPPAT---------------SIGGSNAAD------------------------------------GDDGAGGRTRGGVAS---------GSEG-GALAPLSLAAVGTRLVSSQKRTLA--RRVLPAAAAAXXXXXXXXXAGLARNWAGRQADAHAARGGRGPGGAEADRQDGLRSDSTDVRANGMMTQGVDDMPEPSSTVAELFEALS--TDAGPPTH------GRRVAASSY-------RRQGWRHEEYQSKKKRSVSSVNEIGAGDVAQTAGGGLAT-RNTSAFGGGGPASHAPRQTADGVAMTEAGLAAAE--MAAAEIEKAATAAAAEKSLIRTVGRAKRGPCMLTLTPSSSYEIGQQAARAGTTCRTGEVLQEQTLRGDSFGSCRGPLVFWEVEPAGGLLGSGETKVLRC 944 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.48.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig135.48.2 >prot_P-littoralis_Contig135.48.2 ID=prot_P-littoralis_Contig135.48.2|Name=mRNA_P-littoralis_Contig135.48.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1101bp MTTTTTTTASVPSEEGRVSDGGEPHRDTATFEELGVLGVDGMRTAVATDKback to top mRNA from alignment at P-littoralis_Contig135:171299..190926+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig135.48.2 ID=mRNA_P-littoralis_Contig135.48.2|Name=mRNA_P-littoralis_Contig135.48.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=19628bp|location=Sequence derived from alignment at P-littoralis_Contig135:171299..190926+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig135:171299..190926+ >mRNA_P-littoralis_Contig135.48.2 ID=mRNA_P-littoralis_Contig135.48.2|Name=mRNA_P-littoralis_Contig135.48.2|organism=Pylaiella littoralis U1_48|type=CDS|length=3303bp|location=Sequence derived from alignment at P-littoralis_Contig135:171299..190926+ (Pylaiella littoralis U1_48)back to top |