mRNA_P-littoralis_Contig135.93.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig135.93.1
Unique NamemRNA_P-littoralis_Contig135.93.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig135.93.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 5.070e-7
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:  100 WTEKDFLVDALLSIVGGSSEDGEGGRVDSGSGNG 201
            W +K+FLV+ALLS+ GGSSEDGEGG VD GSGNG
Sbjct:  339 WRKKEFLVNALLSVAGGSSEDGEGGLVDHGSGNG 372
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9K2_9PHAE5.070e-776.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:382919..383388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size206
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789620.7002547-CDS-P-littoralis_Contig135:382918..3830531680789620.7002547-CDS-P-littoralis_Contig135:382918..383053Pylaiella littoralis U1_48CDSP-littoralis_Contig135 382919..383053 -
1680789620.710992-CDS-P-littoralis_Contig135:383319..3833881680789620.710992-CDS-P-littoralis_Contig135:383319..383388Pylaiella littoralis U1_48CDSP-littoralis_Contig135 383320..383388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.93.1prot_P-littoralis_Contig135.93.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig135 382919..383388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig135.93.1

>prot_P-littoralis_Contig135.93.1 ID=prot_P-littoralis_Contig135.93.1|Name=mRNA_P-littoralis_Contig135.93.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
EWIHPQRIATTARMEVILQRQSKVIRMNWTMTTWTEKDFLVDALLSIVGG
SSEDGEGGRVDSGSGNG*
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mRNA from alignment at P-littoralis_Contig135:382919..383388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig135.93.1 ID=mRNA_P-littoralis_Contig135.93.1|Name=mRNA_P-littoralis_Contig135.93.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=470bp|location=Sequence derived from alignment at P-littoralis_Contig135:382919..383388- (Pylaiella littoralis U1_48)
GAGTGGATTCACCCGCAGAGGATAGCGACGACCGCGCGCATGGAGGTGAT
TCTCCAACGCCAATCCAAGGTACCTTTAGCTATTTTGCAAAACACACTAC
GGGTTCTGACCCTTGAACGTCTGCAGTGGTTGCCGTTGTTTGTCACATGC
TAAAACAAAAATATGACTCCCTGTCCCTGCTCGGTACCTTGTTCCATCGC
GGACGTCGTCCATGGCCACAGATTTGTTCAAAGATTCGTGATAATATTGA
AGAACCCATAATCCGGAGTAGGATTCACGATTACAGAAAATCAGGCCTTG
GAGCTCATGCGTTCAACTGTTCGATCTGATTCAAGGTCATCCGGATGAAT
TGGACGATGACAACCTGGACGGAGAAGGATTTTTTGGTCGACGCTTTGCT
TAGCATTGTCGGCGGCTCTAGCGAAGACGGCGAAGGAGGGCGGGTAGATA
GTGGGTCGGGAAACGGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig135:382919..383388-

>mRNA_P-littoralis_Contig135.93.1 ID=mRNA_P-littoralis_Contig135.93.1|Name=mRNA_P-littoralis_Contig135.93.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig135:382919..383388- (Pylaiella littoralis U1_48)
GAGTGGATTCACCCGCAGAGGATAGCGACGACCGCGCGCATGGAGGTGAT
TCTCCAACGCCAATCCAAGGTCATCCGGATGAATTGGACGATGACAACCT
GGACGGAGAAGGATTTTTTGGTCGACGCTTTGCTTAGCATTGTCGGCGGC
TCTAGCGAAGACGGCGAAGGAGGGCGGGTAGATAGTGGGTCGGGAAACGG
GTGA
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