prot_P-littoralis_Contig135.9.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig135.9.1
Unique Nameprot_P-littoralis_Contig135.9.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length826
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig135.9.1 vs. uniprot
Match: D8LSG0_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG0_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.250e-41
Identity = 97/153 (63.40%), Postives = 113/153 (73.86%), Query Frame = 0 
Query:  573 RPMTRQPQRQGEDERGEVEAVDFGGLSSPPTPRPXXXXXXGLPQAPPSWLGVLVGLEMADFAGTDAARASVVLREVKDMEAKELAVLRRLRKIKPGVTLEDYAAFRGAGLRSSSPAYADLEALQEQYRQRQPADHEQELADLAMDGSFISDLL 725
            RP  R+P+  GE ER          L+SP +  P          A P+WLGVLVGL M +FAGT AARASVV+RE +DMEAKELAVL+RL+K+KP VTL+DY AFRGAGLRSSSPAYA LEALQ QY +R P DH+QELADLAM+GSF+SDLL
Sbjct:  408 RPQPRRPEDSGEGERNGSGMTTI--LASPRSEMPRAAA------AAPAWLGVLVGLGMPEFAGTGAARASVVVREARDMEAKELAVLQRLQKLKPEVTLDDYTAFRGAGLRSSSPAYASLEALQGQYLRRPPEDHQQELADLAMNGSFVSDLL 552
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig135.9.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSG0_ECTSI1.250e-4163.40PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 7..27
NoneNo IPR availableCOILSCoilCoilcoord: 446..484
NoneNo IPR availableCOILSCoilCoilcoord: 366..393
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 567..579
score: 38.46
coord: 736..761
score: 43.08
coord: 534..550
score: 27.06
coord: 597..618
score: 40.91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 739..760
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 493..516
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 716..826
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 450..479
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 253..297
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 419..616
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 329..357
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..309
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 601..615
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..232
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 35..116
e-value: 2.46193E-9
score: 52.5691
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 46..121
e-value: 5.1E-8
score: 42.6
IPR001478PDZ domainPFAMPF00595PDZcoord: 49..115
e-value: 1.5E-6
score: 28.4
IPR001478PDZ domainPROSITEPS50106PDZcoord: 37..121
score: 10.9785
IPR036034PDZ superfamilyGENE3D2.30.42.10coord: 33..130
e-value: 9.6E-11
score: 43.5
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 33..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig135contigP-littoralis_Contig135:38380..57388 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig135.9.1mRNA_P-littoralis_Contig135.9.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig135 38089..57388 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig135.9.1 ID=prot_P-littoralis_Contig135.9.1|Name=mRNA_P-littoralis_Contig135.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=826bp
MSQRHAKQEQEQEQQKYQGEKEAKAMEATELDLFEKRIVVLMPPDRTVGL
ELDFSAEAMKGSGVRVSRVDPGGISDKSGVRLEDRLIFVGDVDVRGMRHL
QIREVLLVRNRMVRLVFQRPLTKFQAGILTRRRIEEQEIRRISEMKARRM
AEMEATKTEVKPGKTTDFLAGGSAGGNGRTWNHSSSRDRSMSNSISTSPA
SAGTGATSTSRGSRSSSSARRNVRSGAASRGQRKASASAPAFAPASAVSA
QHMRGHQLFNTRRSSSSSSGSSRGISTGSTSTSSGSTSTSTSTSTSKISR
HTREERAASVAEAASALALLAELDVRIGPSTTNKAKKKPPPSPAVRKRPR
REMTTKRSVAPQTSALGDTVEQLDRFAIELQQVEERQKREQEQRLQHRWK
RGGEFGTSCVKEAQRNEFSMAPPPAGKRGGGVAGQGQGQGQGPTAIELVR
RQLKQEDKRQRQLEEERQELMEQQRQQRQRLEARMGGGGGGGGGEREKKD
RENGVREKDEDAARAKTITIRIAAVAAAGSKGSSSSPLPAAPAGPVAPAE
GGREGAAPAAAAPPAAVTPPPARPMTRQPQRQGEDERGEVEAVDFGGLSS
PPTPRPTPRLPQGLPQAPPSWLGVLVGLEMADFAGTDAARASVVLREVKD
MEAKELAVLRRLRKIKPGVTLEDYAAFRGAGLRSSSPAYADLEALQEQYR
QRQPADHEQELADLAMDGSFISDLLGGDEPTKTSTATTTPPTPLPPPPPP
LPPPPPPSSASASASASLLPTAEAEKSPPLVTAAAAGGGRATEVYRSSVG
DSSGIGRDGGGHCDARGDGDGRMPSL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf