mRNA_P-littoralis_Contig1349.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1349.14.1
Unique NamemRNA_P-littoralis_Contig1349.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1349.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1349contigP-littoralis_Contig1349:20216..21355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size667
Hectar predicted targeting categoryother localisation
Exons2
Cds size666
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789620.2091901-CDS-P-littoralis_Contig1349:20215..206161680789620.2091901-CDS-P-littoralis_Contig1349:20215..20616Pylaiella littoralis U1_48CDSP-littoralis_Contig1349 20216..20616 +
1680789620.2192307-CDS-P-littoralis_Contig1349:21090..213551680789620.2192307-CDS-P-littoralis_Contig1349:21090..21355Pylaiella littoralis U1_48CDSP-littoralis_Contig1349 21091..21355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1349.14.1prot_P-littoralis_Contig1349.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1349 20216..21355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1349.14.1

>prot_P-littoralis_Contig1349.14.1 ID=prot_P-littoralis_Contig1349.14.1|Name=mRNA_P-littoralis_Contig1349.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=222bp
SEETVKDSAQGTVGSRSSAGDGKVPGPDEPKPSGGDSSSTGAPLSGAKRT
VETYLKYNCACSKCNMAEPNSKRRVRLCDRGDCGRWVHKHESSAFATIPS
VSPGHEQFSMGRKTTTSKCCVHNNVFQSQCPCRSCVRRRRSKNRRGRGGR
AAGRGAAGRAQGTQTGRKTQVWNADAVYVLPAGERDESTTLSVGIYGANR
VITSVNSKTKGSSCSRPNCHT*
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mRNA from alignment at P-littoralis_Contig1349:20216..21355+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1349.14.1 ID=mRNA_P-littoralis_Contig1349.14.1|Name=mRNA_P-littoralis_Contig1349.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1140bp|location=Sequence derived from alignment at P-littoralis_Contig1349:20216..21355+ (Pylaiella littoralis U1_48)
TCTGAAGAAACGGTCAAAGATAGTGCACAAGGGACCGTGGGTAGCAGGAG
CAGCGCAGGAGATGGGAAAGTCCCTGGGCCCGATGAACCAAAACCAAGCG
GTGGCGACAGCAGCAGCACAGGTGCGCCGCTTTCAGGCGCAAAACGTACG
GTCGAAACGTACTTGAAATACAACTGTGCATGCAGCAAGTGCAACATGGC
CGAACCGAATTCAAAGAGGAGGGTACGGCTGTGTGACCGCGGCGATTGCG
GGCGGTGGGTTCACAAGCACGAAAGTAGCGCGTTCGCCACTATCCCCTCG
GTGTCCCCGGGACATGAACAATTCAGCATGGGCCGCAAGACCACCACCTC
CAAGTGCTGCGTCCACAACAACGTGTTCCAAAGCCAGTGCCCCTGCCGCA
GGTAAGAGTGTGATGCGAAACGTCCGGAAGCACAACGATCGGCGATGTCT
CTCTGTTACGATCCCTGGCAAAAACAGGATATGTCAATGAGGATCAACGC
CCCCCCGCCGAATATTCTTGTTTTATGTACTCAAGTACAGTATCATTGGG
TTCGGAGAAGGTCGACGAGGACAAATGGAGTTGAATATATGGGTCGTTGT
GTGTTGGCTCCGCGCCTGGTTTTCGGAAGGAAGTACAAATGAATGTAGTG
CAAAACACGAACAAGACGAGACCGTGGCAGAGCCCTCGCTTGCAACATTT
CGATTTTTTTTTTAGCGCTTAAATTATCCCTCGGTATTGCAAAGTAGCCG
TCAGGCCTTGTGTACCTTCTTTAGCGTCAAGACTAGTCGTACACCTTCGC
ACATCTTTGTGAAAGGTAACGCACATGTAATTTGAACGAACCTTTTGTTC
TGCCTCTGCCATCGGTACCTTCCAGCTGCGTTAGGCGCAGGCGCTCGAAG
AACAGGCGGGGAAGGGGAGGTCGAGCAGCGGGACGAGGAGCTGCCGGCCG
CGCGCAGGGCACACAAACTGGAAGAAAGACGCAAGTGTGGAACGCGGATG
CCGTCTACGTACTGCCGGCGGGTGAGCGAGATGAGAGCACAACCCTGTCA
GTGGGCATTTACGGCGCGAACAGAGTGATAACATCGGTGAACTCGAAGAC
CAAGGGTTCCAGCTGCTCACGGCCAAATTGCCACACGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1349:20216..21355+

>mRNA_P-littoralis_Contig1349.14.1 ID=mRNA_P-littoralis_Contig1349.14.1|Name=mRNA_P-littoralis_Contig1349.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=666bp|location=Sequence derived from alignment at P-littoralis_Contig1349:20216..21355+ (Pylaiella littoralis U1_48)
TCTGAAGAAACGGTCAAAGATAGTGCACAAGGGACCGTGGGTAGCAGGAG
CAGCGCAGGAGATGGGAAAGTCCCTGGGCCCGATGAACCAAAACCAAGCG
GTGGCGACAGCAGCAGCACAGGTGCGCCGCTTTCAGGCGCAAAACGTACG
GTCGAAACGTACTTGAAATACAACTGTGCATGCAGCAAGTGCAACATGGC
CGAACCGAATTCAAAGAGGAGGGTACGGCTGTGTGACCGCGGCGATTGCG
GGCGGTGGGTTCACAAGCACGAAAGTAGCGCGTTCGCCACTATCCCCTCG
GTGTCCCCGGGACATGAACAATTCAGCATGGGCCGCAAGACCACCACCTC
CAAGTGCTGCGTCCACAACAACGTGTTCCAAAGCCAGTGCCCCTGCCGCA
GCTGCGTTAGGCGCAGGCGCTCGAAGAACAGGCGGGGAAGGGGAGGTCGA
GCAGCGGGACGAGGAGCTGCCGGCCGCGCGCAGGGCACACAAACTGGAAG
AAAGACGCAAGTGTGGAACGCGGATGCCGTCTACGTACTGCCGGCGGGTG
AGCGAGATGAGAGCACAACCCTGTCAGTGGGCATTTACGGCGCGAACAGA
GTGATAACATCGGTGAACTCGAAGACCAAGGGTTCCAGCTGCTCACGGCC
AAATTGCCACACGTGA
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