mRNA_P-littoralis_Contig1348.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1348.1.1
Unique NamemRNA_P-littoralis_Contig1348.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1348.1.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 3.150e-26
Identity = 56/76 (73.68%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    1 MVMNLVGRSVSRKHNGSVADAFGPLGPDGKLLSHDVFNQVVVEVGRAYFGVDNPDVYSMRTVQDTLASEDLVAVGL 228
            MVMNLVGR   RK  GSV   FGPL PDG+ LS DVF +VVV VGR YFGVDN DVYSMRTVQDT+A+EDLV VGL
Sbjct: 1333 MVMNLVGREFLRKKIGSVDPEFGPLAPDGQRLSDDVFKKVVVAVGRTYFGVDNADVYSMRTVQDTIATEDLVEVGL 1408
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BLAST of mRNA_P-littoralis_Contig1348.1.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 3.430e-14
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 MVMNLVGRSVSRKHNGSVAD-AFGPLGPDGKLLSHDVFNQVVVEVGRAYFGVDNPDVYSMRTVQDTLASEDLVAVG 225
            MVM+LVGR+  R+ N  V D +FGPL  +G  ++ D F ++  +V RAYFGVDN DVYS+RT  D+ A +DL+AVG
Sbjct:  352 MVMSLVGRAFLREDNNGVVDESFGPLNSNGTQITADTFGKIF-KVMRAYFGVDNADVYSLRTAHDSQAVKDLLAVG 426
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BLAST of mRNA_P-littoralis_Contig1348.1.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 5.690e-13
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 MVMNLVGRSVSRKHNGSVAD-AFGPLGPDGKLLSHDVFNQVVVEVGRAYFGVDNPDVYSMRTVQDTLASEDLVAVGL 228
            +VM LVGR   +KHN    D +FGPLG DG++L+  VF  V+  +G+A+F   N DV ++R+VQ++LA+E +V +G+
Sbjct: 1361 VVMALVGRPFLKKHNQGFLDKSFGPLGTDGEVLTEYVFGVVLESIGKAFFSTGNADVNALRSVQESLAAEHMVELGI 1437
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1348.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L073_9PHAE3.150e-2673.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3S0_ECTSI3.430e-1452.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPM1_ECTSI5.690e-1345.45PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1348contigP-littoralis_Contig1348:6..233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size228
Hectar predicted targeting categoryother localisation
Exons1
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789620.1322722-CDS-P-littoralis_Contig1348:5..2331680789620.1322722-CDS-P-littoralis_Contig1348:5..233Pylaiella littoralis U1_48CDSP-littoralis_Contig1348 6..233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1348.1.1prot_P-littoralis_Contig1348.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1348 6..233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1348.1.1

>prot_P-littoralis_Contig1348.1.1 ID=prot_P-littoralis_Contig1348.1.1|Name=mRNA_P-littoralis_Contig1348.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
MVMNLVGRSVSRKHNGSVADAFGPLGPDGKLLSHDVFNQVVVEVGRAYFG
VDNPDVYSMRTVQDTLASEDLVAVGL
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mRNA from alignment at P-littoralis_Contig1348:6..233-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1348.1.1 ID=mRNA_P-littoralis_Contig1348.1.1|Name=mRNA_P-littoralis_Contig1348.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig1348:6..233- (Pylaiella littoralis U1_48)
ATGGTGATGAACCTGGTTGGGCGAAGCGTTTCTCGGAAGCACAATGGGAG
TGTGGCCGACGCGTTCGGTCCACTGGGACCAGACGGGAAGCTACTCTCGC
ACGATGTGTTTAATCAAGTTGTCGTGGAGGTTGGCCGGGCGTACTTCGGG
GTGGACAACCCGGACGTTTATTCAATGCGGACCGTACAGGATACGTTGGC
TAGCGAGGACCTGGTCGCGGTGGGGCTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1348:6..233-

>mRNA_P-littoralis_Contig1348.1.1 ID=mRNA_P-littoralis_Contig1348.1.1|Name=mRNA_P-littoralis_Contig1348.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig1348:6..233- (Pylaiella littoralis U1_48)
ATGGTGATGAACCTGGTTGGGCGAAGCGTTTCTCGGAAGCACAATGGGAG
TGTGGCCGACGCGTTCGGTCCACTGGGACCAGACGGGAAGCTACTCTCGC
ACGATGTGTTTAATCAAGTTGTCGTGGAGGTTGGCCGGGCGTACTTCGGG
GTGGACAACCCGGACGTTTATTCAATGCGGACCGTACAGGATACGTTGGC
TAGCGAGGACCTGGTCGCGGTGGGGCTT
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