mRNA_P-littoralis_Contig1347.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1347.12.1
Unique NamemRNA_P-littoralis_Contig1347.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1347.12.1 vs. uniprot
Match: A0A6H5JYK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK1_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 1.520e-64
Identity = 112/212 (52.83%), Postives = 139/212 (65.57%), Query Frame = 1 
Query:    7 GAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKALCEGVVWAAKDYVNGKWVTKEDCTAGPVCRTVLRDLVKVLPLES--AFSENAEAG--GGEPHGYKEWCSSLGFSSDGVPPDKLTWQQRVSLTLPSSSDLNQRYGSLLGCGRPPDSNPCTSPTCSLCWRNRHMGLSHNTVWCFNHWGQAPEAASGGMGKLRGGSVEDAG 630
            GAV N N  ESKHK+ KK + S+SGRDN  HI+RT+ND  ALKALC+GV W+AK  V G  VTKE  TAGP+CR VL+++ K+LPL++  A SE+   G  GG PHGY++W + L  +      D   WQQ +S TLPS+  L + Y   LGCGR     PC+  TCS CWRNR  G+   TV  FNHWGQAP   S G+G +RGG V+DAG
Sbjct:   31 GAVGNANFGESKHKEVKKSATSASGRDNPVHIFRTWNDTQALKALCDGVRWSAKGRVGGVEVTKE-LTAGPLCREVLQEVFKILPLQTTPAASEDDTTGRRGGRPHGYQQWDAGLVPTRVETGLDAPAWQQAISKTLPSAEQLQKCYDDSLGCGRTAQEAPCSRRTCSFCWRNRGQGIVRQTVVVFNHWGQAPAEVSAGIGTIRGGPVKDAG 241
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1347.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYK1_9PHAE1.520e-6452.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1347contigP-littoralis_Contig1347:27341..27988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size649
Hectar predicted targeting categoryother localisation
Exons1
Cds size648
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789620.0924473-CDS-P-littoralis_Contig1347:27340..279881680789620.0924473-CDS-P-littoralis_Contig1347:27340..27988Pylaiella littoralis U1_48CDSP-littoralis_Contig1347 27341..27988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1347.12.1prot_P-littoralis_Contig1347.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1347 27341..27988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1347.12.1

>prot_P-littoralis_Contig1347.12.1 ID=prot_P-littoralis_Contig1347.12.1|Name=mRNA_P-littoralis_Contig1347.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=216bp
MPGAVSNTNPAESKHKQHKKGSASSSGRDNMKHIWRTYNDGVALKALCEG
VVWAAKDYVNGKWVTKEDCTAGPVCRTVLRDLVKVLPLESAFSENAEAGG
GEPHGYKEWCSSLGFSSDGVPPDKLTWQQRVSLTLPSSSDLNQRYGSLLG
CGRPPDSNPCTSPTCSLCWRNRHMGLSHNTVWCFNHWGQAPEAASGGMGK
LRGGSVEDAGRMPSDW
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mRNA from alignment at P-littoralis_Contig1347:27341..27988+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1347.12.1 ID=mRNA_P-littoralis_Contig1347.12.1|Name=mRNA_P-littoralis_Contig1347.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=648bp|location=Sequence derived from alignment at P-littoralis_Contig1347:27341..27988+ (Pylaiella littoralis U1_48)
ATGCCAGGTGCCGTGTCGAACACCAACCCAGCCGAATCTAAGCACAAGCA
ACACAAGAAAGGGTCGGCATCATCTAGCGGCCGGGACAACATGAAGCACA
TATGGAGAACGTACAACGATGGCGTCGCGCTGAAGGCGCTGTGCGAAGGA
GTGGTGTGGGCGGCTAAGGACTACGTAAATGGGAAGTGGGTCACGAAGGA
GGATTGTACGGCCGGCCCGGTTTGTCGCACTGTCCTCAGGGACCTCGTCA
AGGTCCTACCGCTAGAATCAGCTTTCTCCGAGAACGCGGAGGCGGGTGGC
GGGGAGCCACACGGATACAAGGAGTGGTGTTCATCACTGGGTTTTTCGAG
CGACGGAGTTCCACCCGACAAGCTGACATGGCAGCAACGTGTTTCCTTGA
CTCTGCCGTCCAGCAGTGACCTAAACCAACGGTACGGCAGTCTACTCGGC
TGCGGTCGGCCACCAGACTCGAACCCGTGCACCAGCCCCACGTGCTCTCT
CTGCTGGAGGAACAGGCACATGGGGCTATCCCACAACACCGTGTGGTGCT
TCAACCATTGGGGGCAAGCACCGGAAGCCGCCAGCGGCGGCATGGGCAAA
CTCCGTGGTGGCTCGGTGGAGGATGCCGGTCGTATGCCCAGCGATTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1347:27341..27988+

>mRNA_P-littoralis_Contig1347.12.1 ID=mRNA_P-littoralis_Contig1347.12.1|Name=mRNA_P-littoralis_Contig1347.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=648bp|location=Sequence derived from alignment at P-littoralis_Contig1347:27341..27988+ (Pylaiella littoralis U1_48)
ATGCCAGGTGCCGTGTCGAACACCAACCCAGCCGAATCTAAGCACAAGCA
ACACAAGAAAGGGTCGGCATCATCTAGCGGCCGGGACAACATGAAGCACA
TATGGAGAACGTACAACGATGGCGTCGCGCTGAAGGCGCTGTGCGAAGGA
GTGGTGTGGGCGGCTAAGGACTACGTAAATGGGAAGTGGGTCACGAAGGA
GGATTGTACGGCCGGCCCGGTTTGTCGCACTGTCCTCAGGGACCTCGTCA
AGGTCCTACCGCTAGAATCAGCTTTCTCCGAGAACGCGGAGGCGGGTGGC
GGGGAGCCACACGGATACAAGGAGTGGTGTTCATCACTGGGTTTTTCGAG
CGACGGAGTTCCACCCGACAAGCTGACATGGCAGCAACGTGTTTCCTTGA
CTCTGCCGTCCAGCAGTGACCTAAACCAACGGTACGGCAGTCTACTCGGC
TGCGGTCGGCCACCAGACTCGAACCCGTGCACCAGCCCCACGTGCTCTCT
CTGCTGGAGGAACAGGCACATGGGGCTATCCCACAACACCGTGTGGTGCT
TCAACCATTGGGGGCAAGCACCGGAAGCCGCCAGCGGCGGCATGGGCAAA
CTCCGTGGTGGCTCGGTGGAGGATGCCGGTCGTATGCCCAGCGATTGG
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