mRNA_P-littoralis_Contig1347.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1347.13.1
Unique NamemRNA_P-littoralis_Contig1347.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1347.13.1 vs. uniprot
Match: A0A6H5LF20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF20_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 8.300e-13
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 3 
Query:    9 LSFFPVAAIRRVVHIVHDCPATGASACGLVSDGNNRSVWQCKLDKRSRYLLNGYFHSIVRDPI 197
            L+F+P  AIRRVVH++H CP +G SACGLV +   +  W+C L   S YLLN YFHS  RD I
Sbjct:  365 LTFYPTPAIRRVVHMMHACPTSGESACGLVRESKRQ--WRCNLLGTSTYLLNKYFHSPGRDSI 425
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1347.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LF20_9PHAE8.300e-1355.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1347contigP-littoralis_Contig1347:28259..29038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size375
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789619.9906292-CDS-P-littoralis_Contig1347:28258..284631680789619.9906292-CDS-P-littoralis_Contig1347:28258..28463Pylaiella littoralis U1_48CDSP-littoralis_Contig1347 28259..28463 +
1680789619.9999557-CDS-P-littoralis_Contig1347:28870..289231680789619.9999557-CDS-P-littoralis_Contig1347:28870..28923Pylaiella littoralis U1_48CDSP-littoralis_Contig1347 28871..28923 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789620.0095413-UTR-P-littoralis_Contig1347:28923..290381680789620.0095413-UTR-P-littoralis_Contig1347:28923..29038Pylaiella littoralis U1_48UTRP-littoralis_Contig1347 28924..29038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1347.13.1prot_P-littoralis_Contig1347.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1347 28259..28923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1347.13.1

>prot_P-littoralis_Contig1347.13.1 ID=prot_P-littoralis_Contig1347.13.1|Name=mRNA_P-littoralis_Contig1347.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
AASCPSSLSQPYDESCISCTTALLQELLHVVWSATATTAQCGSVNWTSDR
ATSSTATSTASCVTPLPKCHFQPAFRNGAAGSSGS*
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mRNA from alignment at P-littoralis_Contig1347:28259..29038+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1347.13.1 ID=mRNA_P-littoralis_Contig1347.13.1|Name=mRNA_P-littoralis_Contig1347.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=780bp|location=Sequence derived from alignment at P-littoralis_Contig1347:28259..29038+ (Pylaiella littoralis U1_48)
GCAGCAAGCTGTCCTTCTTCCCTGTCGCAGCCATACGACGAGTCGTGCAT
ATCGTGCACGACTGCCCTGCTACAGGAGCTTCTGCATGTGGTCTGGTCAG
CGACGGCAACAACCGCTCAGTGTGGCAGTGTAAACTGGACAAGCGATCGC
GCTACCTCCTCAACGGCTACTTCCACAGCATCGTGCGTGACCCCATTGCC
TAAATGTGAGTCCACGCGATTGGATTGAAAGATATTCGCCACCTCCCCTC
CTCCCAGACAACCCTATTGTTATATCCTATAAGCCATGAACGGCACGCTG
TGGTTTGCAAATAACACCAAATTTTACCCCCGCTCCCCCGCTCTGAAACC
AAGTGCGGTCGAAAGTCGTCAGCGATGGGGAACACATGTTCCGACGGGAC
GCAAAAGTAAAATCCAATCATCTCATTTTTTAGTTTCATGCGTACTTGAA
CGAACACCGAGACCGCTGATCGGTTGTTTCTCCGTGGTAGAATGCGCCAA
AGACTTTTAAAAGGGGCTGTGATATCCGGAAGAGTAATATTCACACTCCT
CGACGACCCCCCCCCCCCCCCCCCAACTACAACTGCCACCGACTTCCACC
GATATTTAGCAGGTCATTTTCAACCCGCGTTCAGGAATGGGGCAGCCGGA
AGCAGCGGTAGTTGAGATACCGACGTCCTGCTCGTTGTAGGCGGAAGGGC
GGGTGTAGCGGCGGGGCTTCTTTCTACCGATGCGTTTTGGATGGATGTTG
CGGCTCGTCGTCCAACGCGCACCGGCGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1347:28259..29038+

>mRNA_P-littoralis_Contig1347.13.1 ID=mRNA_P-littoralis_Contig1347.13.1|Name=mRNA_P-littoralis_Contig1347.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig1347:28259..29038+ (Pylaiella littoralis U1_48)
GCAGCAAGCTGTCCTTCTTCCCTGTCGCAGCCATACGACGAGTCGTGCAT
ATCGTGCACGACTGCCCTGCTACAGGAGCTTCTGCATGTGGTCTGGTCAG
CGACGGCAACAACCGCTCAGTGTGGCAGTGTAAACTGGACAAGCGATCGC
GCTACCTCCTCAACGGCTACTTCCACAGCATCGTGCGTGACCCCATTGCC
TAAATGTCATTTTCAACCCGCGTTCAGGAATGGGGCAGCCGGAAGCAGCG
GTAGTTGA
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