mRNA_P-littoralis_Contig1347.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1347.6.1
Unique NamemRNA_P-littoralis_Contig1347.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1347.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1347contigP-littoralis_Contig1347:21045..22540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size232
Hectar predicted targeting categoryother localisation
Exons2
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789619.9466057-CDS-P-littoralis_Contig1347:21044..211471680789619.9466057-CDS-P-littoralis_Contig1347:21044..21147Pylaiella littoralis U1_48CDSP-littoralis_Contig1347 21045..21147 +
1680789619.957366-CDS-P-littoralis_Contig1347:22413..225381680789619.957366-CDS-P-littoralis_Contig1347:22413..22538Pylaiella littoralis U1_48CDSP-littoralis_Contig1347 22414..22538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1347.6.1prot_P-littoralis_Contig1347.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1347 21045..22538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1347.6.1

>prot_P-littoralis_Contig1347.6.1 ID=prot_P-littoralis_Contig1347.6.1|Name=mRNA_P-littoralis_Contig1347.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
SEPIAPAASDAARSSVGGQGLGASGDPGGEAIEDGASGMYDDGNASDGAD
DSPADRTKNTKAPWVDLLHEFLSAYR
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mRNA from alignment at P-littoralis_Contig1347:21045..22540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1347.6.1 ID=mRNA_P-littoralis_Contig1347.6.1|Name=mRNA_P-littoralis_Contig1347.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1496bp|location=Sequence derived from alignment at P-littoralis_Contig1347:21045..22540+ (Pylaiella littoralis U1_48)
TCAGAGCCTATTGCACCTGCTGCGAGCGATGCCGCTAGGTCAAGCGTGGG
CGGTCAAGGATTGGGTGCTTCAGGTGATCCGGGTGGCGAGGCCATAGAAG
ACGGTGAGTTGACATGAACGAGGGAGAGATGAGCAGAGCGTGATCTTAGA
TTGGCATCCTCCCGGCGCTACCGATACAGCAGTGTCCAGAATGCGACGTA
TAATATCACCCCCTCCCCCCCTGGGCTCTTTTTTTCCTCGAACGACGATT
ACGCCGCCACGAACAGGATACCAATATCAAAATATACGGTGCGTTTTCAC
GACATATCTCCAACGCCACGCTTGTCGGCACCGAAAATCGGGCAAGGGGG
ATATACCTGGTACAAAAAAAGTCTTATATTTTCACTCCGTAGGGGGGGGT
CTTATCCTACGCAACCTACTGCTGTATATACACGTATATATACCAGGGGT
ACTTATATACAGCCGCATATCGTTCTACCCCCCGCATAGGCAAGGGCAAC
ACCAATAGTGGCCAAACGGTTAGATGGCAGCTTTCTATTTTTGTCGCATG
CATGTTTTTAATTTTTACAAGCAGTTGGTCGGGGATTGCTGAGCAGAATT
GTTGGGTTCCGTGCGATTTGGGTACCGTAAAGTACCGTAAATTAGCAGGA
ATGGCTGCTATTTCACCCCGTTGTAGACGTTTTAGGGTGTCTCCATGCTC
CCTGTGTCGCTTCTGTCTTTGCTTTGACCTGCTGCCCCGCACTTTAGGAT
AGGCAACACACCACAAAAAAATGCAAACAATCGCATGCAACCTCTCACCA
TACGGGGTGCCGGCAAACACCTTCGCACAAGTGCCGGATGAAAGCAGCTT
TTTCGCCAAACAGTCGGCTATATTCGTTCGCAGTGATACTTAAACTCCAA
GAACACAATCCCGTCGAAAATAACCCCGGGGTTAACACATCATGAACGAT
GTACCCCGGGGGGCTTCGCACTTGTATCTTGTGGGGGGGGTTTGGTAGGC
TGTTTTCACACAATGTTTCGTATTCTGATCCGATAATTATGCGCCCCGAA
TTGGTGGCCTCGCAAGAAAAAAGCGTTTTCGTAGACCCAGGGTTAACTTT
GTTGTCATTTCCTTAATTATCGACCCTCGTATGCAGACCCGGGGCGATAT
TTCTGCGCAACGGTTTCGTTCCGTCCCCGTAGACCCCGACAAAGGGGTGA
CGAAGATCCACTTACATGTAGAAACGACTTCATACTTCCTGTCCCGTGCT
CACTCGAAAACGTACGATACTGCATGTGCCTTGATCGTTTTTAACAACGG
CAGTATTTAAATCGTATCACGTCGCCTGTGCTCGCTGTTGCTGCCACTTG
CCCCCTCAACTCGGCTCAGGCGCGAGCGGCATGTACGACGATGGTAACGC
TTCCGATGGCGCCGACGATTCGCCTGCGGACCGAACGAAGAACACGAAGG
CTCCTTGGGTTGACCTGTTGCACGAGTTCCTGAGCGCATACCGAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1347:21045..22540+

>mRNA_P-littoralis_Contig1347.6.1 ID=mRNA_P-littoralis_Contig1347.6.1|Name=mRNA_P-littoralis_Contig1347.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig1347:21045..22540+ (Pylaiella littoralis U1_48)
TCAGAGCCTATTGCACCTGCTGCGAGCGATGCCGCTAGGTCAAGCGTGGG
CGGTCAAGGATTGGGTGCTTCAGGTGATCCGGGTGGCGAGGCCATAGAAG
ACGGCGCGAGCGGCATGTACGACGATGGTAACGCTTCCGATGGCGCCGAC
GATTCGCCTGCGGACCGAACGAAGAACACGAAGGCTCCTTGGGTTGACCT
GTTGCACGAGTTCCTGAGCGCATACCGA
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