mRNA_P-littoralis_Contig1347.2.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1347.2.2
Unique NamemRNA_P-littoralis_Contig1347.2.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1347.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1347contigP-littoralis_Contig1347:16749..19506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size863
Hectar predicted targeting categoryother localisation
Exons6
Cds size441
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1347.2.2prot_P-littoralis_Contig1347.2.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1347 16749..18005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789619.7216558-CDS-P-littoralis_Contig1347:16748..168771680789619.7216558-CDS-P-littoralis_Contig1347:16748..16877Pylaiella littoralis U1_48CDSP-littoralis_Contig1347 16749..16877 -
1680789619.7310698-CDS-P-littoralis_Contig1347:17206..173651680789619.7310698-CDS-P-littoralis_Contig1347:17206..17365Pylaiella littoralis U1_48CDSP-littoralis_Contig1347 17207..17365 -
1680789619.7426372-CDS-P-littoralis_Contig1347:17852..180051680789619.7426372-CDS-P-littoralis_Contig1347:17852..18005Pylaiella littoralis U1_48CDSP-littoralis_Contig1347 17853..18005 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789619.7514515-UTR-P-littoralis_Contig1347:18005..180311680789619.7514515-UTR-P-littoralis_Contig1347:18005..18031Pylaiella littoralis U1_48UTRP-littoralis_Contig1347 18006..18031 -
1680789619.7606285-UTR-P-littoralis_Contig1347:18445..186701680789619.7606285-UTR-P-littoralis_Contig1347:18445..18670Pylaiella littoralis U1_48UTRP-littoralis_Contig1347 18446..18670 -
1680789619.7750251-UTR-P-littoralis_Contig1347:18986..191211680789619.7750251-UTR-P-littoralis_Contig1347:18986..19121Pylaiella littoralis U1_48UTRP-littoralis_Contig1347 18987..19121 -
1680789619.7941139-UTR-P-littoralis_Contig1347:19471..195061680789619.7941139-UTR-P-littoralis_Contig1347:19471..19506Pylaiella littoralis U1_48UTRP-littoralis_Contig1347 19472..19506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1347.2.2

>prot_P-littoralis_Contig1347.2.2 ID=prot_P-littoralis_Contig1347.2.2|Name=mRNA_P-littoralis_Contig1347.2.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=147bp
MKSTLNHDFHEVLGNNTKGAVRKGAENLLKAGEPITSETIFPAARRVFRN
QHSAVEEMVGNMVMERTVNPARHCRGTPARSPQDRVPMRTIEVFGCAPSS
FFNFVAVPMQAFMMNDLRCKLLAEVETLRNATRANDDGGVDDGEDPV
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mRNA from alignment at P-littoralis_Contig1347:16749..19506-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1347.2.2 ID=mRNA_P-littoralis_Contig1347.2.2|Name=mRNA_P-littoralis_Contig1347.2.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2758bp|location=Sequence derived from alignment at P-littoralis_Contig1347:16749..19506- (Pylaiella littoralis U1_48)
CCACGTCGCAGCATCCGGCCCTGGGGCTCGCAAAGGTAAGTAACGTGTGT
TTGGGAGTGATACTGCCGTATTTGTAGGGACTAGGAATGAGGGAGAGAGA
GAGAGAGAGAGAGAGAGATAGAGAGAGAGCACATCACGAGCATGCATGAG
ACCCCAAAGTCACCTATTCTGGGCGTGGTAGTGTTTGTCTCAACATAACC
CTGAGACGGATGATCACTCTTTGAACCCTCTTGGAGTACCGGCAAACTCG
CCACACCTCATGTGCTTGTAACCCCGCTTACACAAAGCGTGTGTCACCAT
TGATTTCGTACTTTAAGTCAACAGAACACGCCTCCACACCGAACGCAAAA
CCTCTACTGCCCCCCTCCTCCCTTGGTGCTACCAGGACATGGCACGTAAG
TCCAAGAACATGCCGAATGAGGACGTCGCCGCGTACTTCATGATAGAAGT
GGGGCAGACGTGGTCTCCGCCGCTCAAGACGTTAATCGCCGTCAGCCTCC
TCAAGGAGTCAGGGCTACCTGTAAGTGCTGGTGTTGCTCCAGCGGTTTTC
ACTCAAGCGCCCCCCCCCCGCCAAACGCGTGTCACTCAAGTTATTATTTC
AACCAAATGAGTTACCATCGTGCTTAAGAATTATGAACTGGTCGGCAAGC
AGCGGAAGATATGATGCCGTGTGTAGCGAGATGGCGTGTATCGTTCTTTC
ATGGCTTTAATGGTACCCCAATCCAGGCGATGCTGGGCCGTTCCAGCTCG
GTACATGTATTTACGGTCATGCGCTCCCCGGCTATAACCTTACCCCTATG
CTTGCTATTGTCATTTTGTTTTTCGCACTGCGACAGATCCAGGTAGGTTC
TTCTGCCCCCGCTCTGGCACCACAAAGGCTGTGGCGGGGTCCAGGGCTGT
TTACAGCCAGGCCTGCCACCTGGTACTGCCGTTCTTGCATGGGATTACGT
CCCACCCGGCATGGAAGACCCCTGCCATTGTCGATCAACATGCTGTCGTA
AAGGCAGCATACCTCCTCTACAAGGAGGGCGGTGGCGAGCTCAACAAAGC
TCAATTTTCCGGTAAGAACTCTTAATAACCTTTCAGAGCAACATGACCTG
CTTTGTGCAGCCATGGATTCCACTTATTCTCAACGCTTGCTGTGAAGTTT
GGTGCTTCCCGGGAAGACGTGTGGCACATCCTCGATAAGGAGTGTGTAGC
AAGGCCTACACGACGAGTAGACGAGCTTTGCTTTCGCCCCCCCCAGCACA
CACACGCATTTCAAGAAACTTTGGTGGATTTCACAGAGGGTGTTTGGGTG
AACTCACAAATTTGGAGGTTTGCTTTTTTTTTTTTTTCAACCCATCAATC
GGTCGCCCCTGTATTACTTCGCACAGCCGCTTTCAGTAAGTAAGAGTAGT
GATTTCGTTTGTCTGTTTAATGCTCATTTGCCGCTATTGCCCCTTTCTAT
GCGTCGCGTGCAACCCATCTCGTAGAGCGCTTGGTTCGCTCGGTAATTCC
CATGAAGTCCACCCTAAATCACGATTTCCACGAGGTGTTGGGTAACAACA
CCAAGGGCGCCGTCCGCAAGGGGGCGGAGAACCTTCTGAAGGCGGGGGAG
CCTATCACGAGCGAGACCATCTTCCCTGCCGCCCGTCGAGTGTTTCGGAA
CCAGGTTTGTCAAGGGGCACCCTGATGGGAGTTTTACAAATCATTGACAT
GCCGTCGGCTATCCCCCCCCCCCCCTCCACTAGAGCAGAAGATAACGCAG
GGGGAGTTTGGTTATTTTTGTTTCCCTCCCCCCCCCCTCCCATCTTCCTG
TGTTTTGCTACATACGTGTTCTCATGTTCGATCAAAGCATAACGACTCAT
TTTGAATCCACGGCCACTGGTGCCGTATATTTCATGTATTTCATCTCTCA
GGTAGTCTGGTACATTAGGGATTCCTCTTGTAACACATTTGTTAAAGTTT
TGTCTGTTTGTTGTGTTGCACGCGAACAGCGGCCTCGAGCTGTGGTGTTG
ACGCGTTCGTGTGGTGGAGCGGCACAAATAATGTTGAGCCCAAAAGAAAA
AACATCGCATAACGCTTGCTGATTGGTACGTTGACCCTGGTCTTGCTTGA
AATGTTTACACATTGCTCTTCTCTCTGTTCCCCCATGCCAGCACTCTGCG
GTGGAGGAGATGGTTGGCAACATGGTCATGGAGCGCACGGTGAACCCGGC
AAGGCACTGCCGGGGAACCCCCGCAAGGTCGCCTCAAGACCGCGTCCCGA
TGCGCACGATCGAGGTGTTTGGCTGCGCCCCATCCTCATTCTTCAACTTC
GTAAGTTTCTCGTTATCATTTGCTCGGTCTTGACGCGGAGGCTGTTTCTG
TATGAATATTGGTGATCCCGTTGCAAGGAAACACGTGTTGACTCCCCCCG
CGCGCGCCCCCGCCATGAACAAGTACTTTAGAACCCACAAATCCCACTCG
TAGTTGGCTTTTGAGGTGGCGTTGCCATGGACTTGTCAAGTTTTGCGTGT
CGAGGGTGTCCAACTAGACATTATCGATCCTCAATATCACCGAGCAATCC
ATGAAGCACAACAACTAACAAATTTCGTTTGTGTGTATTTTTTTTATTCT
TCGTATTGCACTTTCTTGTTTGGAGCCAGGTGGCTGTACCCATGCAGGCG
TTTATGATGAACGACCTGAGGTGCAAGCTGCTCGCCGAAGTGGAGACACT
TCGCAACGCGACCCGCGCCAACGACGATGGTGGTGTGGATGATGGGGAGG
ACCCCGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1347:16749..19506-

>mRNA_P-littoralis_Contig1347.2.2 ID=mRNA_P-littoralis_Contig1347.2.2|Name=mRNA_P-littoralis_Contig1347.2.2|organism=Pylaiella littoralis U1_48|type=CDS|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig1347:16749..19506- (Pylaiella littoralis U1_48)
ATGAAGTCCACCCTAAATCACGATTTCCACGAGGTGTTGGGTAACAACAC
CAAGGGCGCCGTCCGCAAGGGGGCGGAGAACCTTCTGAAGGCGGGGGAGC
CTATCACGAGCGAGACCATCTTCCCTGCCGCCCGTCGAGTGTTTCGGAAC
CAGCACTCTGCGGTGGAGGAGATGGTTGGCAACATGGTCATGGAGCGCAC
GGTGAACCCGGCAAGGCACTGCCGGGGAACCCCCGCAAGGTCGCCTCAAG
ACCGCGTCCCGATGCGCACGATCGAGGTGTTTGGCTGCGCCCCATCCTCA
TTCTTCAACTTCGTGGCTGTACCCATGCAGGCGTTTATGATGAACGACCT
GAGGTGCAAGCTGCTCGCCGAAGTGGAGACACTTCGCAACGCGACCCGCG
CCAACGACGATGGTGGTGTGGATGATGGGGAGGACCCCGTA
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