mRNA_P-littoralis_Contig1347.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1347.1.1
Unique NamemRNA_P-littoralis_Contig1347.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1347.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1347contigP-littoralis_Contig1347:10288..12063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size594
Hectar predicted targeting categoryother localisation
Exons2
Cds size594
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789619.669185-CDS-P-littoralis_Contig1347:10287..103681680789619.669185-CDS-P-littoralis_Contig1347:10287..10368Pylaiella littoralis U1_48CDSP-littoralis_Contig1347 10288..10368 -
1680789619.6802204-CDS-P-littoralis_Contig1347:11550..120631680789619.6802204-CDS-P-littoralis_Contig1347:11550..12063Pylaiella littoralis U1_48CDSP-littoralis_Contig1347 11551..12063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1347.1.1prot_P-littoralis_Contig1347.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1347 10288..12063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1347.1.1

>prot_P-littoralis_Contig1347.1.1 ID=prot_P-littoralis_Contig1347.1.1|Name=mRNA_P-littoralis_Contig1347.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=198bp
MEKLQEAEAENGRLLIELAAAQAALMAERMLPATRTDTPAAQVEDASSSS
PLSLSQSASDSNPPTTSSGDGANGQDPTDDDDDDEEEGGRSDAGSVDECD
DDADGSNVRSADPGIAGDLVDNLATPTTSGTPSPQGAMTPAYSAMLLKHD
RKGTEPPAWLLKLLMPVTDDQLRSSVETHSTKIASLVSAVKSLQEQRT
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mRNA from alignment at P-littoralis_Contig1347:10288..12063-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1347.1.1 ID=mRNA_P-littoralis_Contig1347.1.1|Name=mRNA_P-littoralis_Contig1347.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1776bp|location=Sequence derived from alignment at P-littoralis_Contig1347:10288..12063- (Pylaiella littoralis U1_48)
ATGGAGAAGCTGCAGGAGGCAGAAGCGGAGAATGGGCGCCTGCTTATTGA
GCTCGCGGCGGCTCAGGCCGCCCTCATGGCGGAACGGATGTTACCCGCGA
CGCGCACCGACACCCCTGCCGCCCAGGTTGAGGACGCGTCGTCTTCTTCG
CCGTTGTCTTTGTCACAGTCAGCTAGCGACTCCAATCCGCCTACCACCTC
TTCGGGTGATGGGGCTAACGGTCAGGACCCTACCGACGACGATGATGACG
ACGAAGAGGAAGGCGGCCGCTCCGACGCCGGCTCTGTCGACGAGTGCGAC
GACGACGCTGATGGGAGCAACGTTCGCTCGGCTGACCCAGGCATCGCTGG
CGATCTCGTCGACAACCTGGCAACACCCACCACGTCCGGAACACCATCTC
CGCAGGGGGCTATGACCCCTGCCTACTCGGCCATGCTACTAAAGCATGAT
CGGAAAGGGACGGAACCACCAGCCTGGCTCTTGAAGCTACTCATGCCCGT
GACAGACGACCAGGTGAACACAGTTGACCGTATGCCTCGCGTCGAGTTGG
GTAGCATTAGCCCACGTGTTGCCAGTAACAGCGCTGACCCTGCAGCACCA
CAACAACCCCGCAATGTACCTCTGTTATCACACGTACCTTCCACGAACGA
CACTCTACCATCTTGCAATAACAGATCATCTACCGTACAACCTAGAGATC
TTGAGAGCGAGACCCCCCCATCTTGTCACAACAACAACGACAGCAGATCA
TCTGCCGTACAATCCAGACACCTTGGGGTAGAATTTGTCCGAGTCAGGCC
AGCCACCGTCGCTGCCACAGGAACGGACACTCCGGTAGGTGCAAACGCTA
CACAAGGACTTAGCAACCCTGCTAGCGCACGCACCATGCGGGAGTCGGCT
GCTCCTGTCATGACTCCAACAACCCCGCAATTTTTCTCTCACACACAAGT
CGGACCCCAACCGTCTGCTCACCAAGCAGGAACCAACAGCCGATTTGTTT
TGAAACCAACAGATTTGCCGAAGGACCTCGTTTTTTCCGGCGAACAAACT
CAGGACGTCGTTGAGCTTCTTACTCTTTTTCGCGCTCGGGTAAAACTCAA
CTCAGTTGACGGTTGCCCAGATGACGTAGTTGACCAACGTGCCATCAAGT
ACTTGCCACTCCTCGTGCGAGGGGCTGCCAATGACAGTCTTTTGCAGTTG
GCCGCAGGTACTCTTGAGTGGAGAACAGAGAGTGTAATCTCGAATCTTCG
GACTTCGGGACAAAGCACTCGACCAATCTCCCCAACTACTTGGACAGAGT
GGTGCCAAGCATTCAGCTTCCTTTTTTCCGCGCCAAATCGCATTTCTATT
TTAGCGCGTGAAATTACGACGATCAAACAAACAGAATCACAATCAGTGGA
CATGTATGCCCTGAAAGTCACGCAAGCGTGCACCCGTCTGATCGCCGAAG
CCACCCGCTCTGCCCCACCCACTACTAGCCCCCACGAACACGCATGGGAT
GTTTTTCTCACAGCTACGTTTGAAAATGGTCTCCTTCCCGGGATCAGGCT
TGAGTGTATCCGAGAAAACCCTGTTCTCAGTTTCCAGGAGGCTCGCGTTC
GCGCGAAAAAACATGAATCAAACAACTTACGAGGCACACCCCTTACACCC
CAAAGCCCAACTACCTATGCTTCGGCCGTGTCGCACAACCCACAGCTGCG
CTCATCAGTGGAGACCCACTCCACCAAAATTGCGAGTCTGGTCTCCGCGG
TCAAGAGTCTCCAAGAACAACGAACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1347:10288..12063-

>mRNA_P-littoralis_Contig1347.1.1 ID=mRNA_P-littoralis_Contig1347.1.1|Name=mRNA_P-littoralis_Contig1347.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=594bp|location=Sequence derived from alignment at P-littoralis_Contig1347:10288..12063- (Pylaiella littoralis U1_48)
ATGGAGAAGCTGCAGGAGGCAGAAGCGGAGAATGGGCGCCTGCTTATTGA
GCTCGCGGCGGCTCAGGCCGCCCTCATGGCGGAACGGATGTTACCCGCGA
CGCGCACCGACACCCCTGCCGCCCAGGTTGAGGACGCGTCGTCTTCTTCG
CCGTTGTCTTTGTCACAGTCAGCTAGCGACTCCAATCCGCCTACCACCTC
TTCGGGTGATGGGGCTAACGGTCAGGACCCTACCGACGACGATGATGACG
ACGAAGAGGAAGGCGGCCGCTCCGACGCCGGCTCTGTCGACGAGTGCGAC
GACGACGCTGATGGGAGCAACGTTCGCTCGGCTGACCCAGGCATCGCTGG
CGATCTCGTCGACAACCTGGCAACACCCACCACGTCCGGAACACCATCTC
CGCAGGGGGCTATGACCCCTGCCTACTCGGCCATGCTACTAAAGCATGAT
CGGAAAGGGACGGAACCACCAGCCTGGCTCTTGAAGCTACTCATGCCCGT
GACAGACGACCAGCTGCGCTCATCAGTGGAGACCCACTCCACCAAAATTG
CGAGTCTGGTCTCCGCGGTCAAGAGTCTCCAAGAACAACGAACC
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