prot_P-littoralis_Contig1346.2.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1346.2.2
Unique Nameprot_P-littoralis_Contig1346.2.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length351
Homology
BLAST of mRNA_P-littoralis_Contig1346.2.2 vs. uniprot
Match: A0A7S6PV05_9STRA (DNA-directed RNA polymerase n=1 Tax=Pedospumella sp. Jangsampo120217C5 TaxID=2782409 RepID=A0A7S6PV05_9STRA)

HSP 1 Score: 598 bits (1541), Expect = 9.550e-204
Identity = 304/346 (87.86%), Postives = 326/346 (94.22%), Query Frame = 0
Query:    1 MFIANTITKKALETIVHETFLSLGSVPSSLLLDSLKLLGFYYATNAGISINIEDLKTPHKKEALIELAVKEIKIISKDWEKGTISDAERFQSIIDSWTVATESLKTKILKHYKNFDPTNNLHIMAFSGARGNISQVRQLIGMRGLMSDQEGKIIDLPIRANFREGLSSIDYMISSYGARKGIVDTALKTADSGYLTRRLIYTTQDLVIREVNCKSTTGIILLLNRKNNIQNIIGRFLISAKDKKSNTFIKEYKNTIITTSAAKKLRNLAPIVLNLRSPLSCSASGSICQNCYGWDLAQSTLISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIYTSENVRQLLHLF 346
            MFI NTITKKALETIVHETFL+LGSVPSS LLDSLKLLGFYYATNAGISINIEDLKTP++KE LIE A++EI  ISKDWE G ISDAERFQSIIDSWT+ATESLKTKILKHYKNFDPTNNLH+MAFSGARGNISQVRQLIGMRGLMSDQEGKIIDLPIRANFREGLSSIDYMISSYGARKGIVDTALKTADSGYLTRRLIYTTQDLVIRE++CKST G+ILLLN+KNN+QNIIGR L SAKDKKS  F++ YKNT+ITT+ +K L+NLAPI+LNLRSPL+C A+GSICQNCYGWDLAQSTLISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIYTSENVRQ+   F
Sbjct:    1 MFITNTITKKALETIVHETFLNLGSVPSSSLLDSLKLLGFYYATNAGISINIEDLKTPNEKEKLIEFAIEEINTISKDWESGAISDAERFQSIIDSWTIATESLKTKILKHYKNFDPTNNLHVMAFSGARGNISQVRQLIGMRGLMSDQEGKIIDLPIRANFREGLSSIDYMISSYGARKGIVDTALKTADSGYLTRRLIYTTQDLVIREIDCKSTAGVILLLNKKNNVQNIIGRVLNSAKDKKSKIFLENYKNTVITTNISKNLKNLAPIILNLRSPLTCLANGSICQNCYGWDLAQSTLISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIYTSENVRQIFAPF 346          
BLAST of mRNA_P-littoralis_Contig1346.2.2 vs. uniprot
Match: A0A0D3ML31_9STRA (DNA-directed RNA polymerase n=1 Tax=Ochromonas sp. CCMP1393 TaxID=420556 RepID=A0A0D3ML31_9STRA)

HSP 1 Score: 484 bits (1245), Expect = 1.940e-159
Identity = 239/346 (69.08%), Postives = 292/346 (84.39%), Query Frame = 0
Query:    1 MFIANTITKKALETIVHETFLSLGSVPSSLLLDSLKLLGFYYATNAGISINIEDLKTPHKKEALIELAVKEIKIISKDWEKGTISDAERFQSIIDSWTVATESLKTKILKHYKNFDPTNNLHIMAFSGARGNISQVRQLIGMRGLMSDQEGKIIDLPIRANFREGLSSIDYMISSYGARKGIVDTALKTADSGYLTRRLIYTTQDLVIREVNCKSTTGIILLLNRKNNIQNIIGRFLISAKDKKSNTFIKEYKNTIITTSAAKKLRNLAPIVLNLRSPLSCSASGSICQNCYGWDLAQSTLISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIYTSENVRQLLHLF 346
            M I  T+TKK LETIVHETF + GS+ SS LLDSLK LGFYYATNAGISINIEDLKTP+ K+  ++ A  E+  +S+ WE+G +SD ERFQ+IIDSW +ATESLK +I+ +Y+NFDP NNL+IMAFSGARGN+SQVRQL+GMRGLMSDQEGKIIDLPI+ NFREGLSSIDY+ISSYGARKGIVDTALKTADSGYLTRRLIY  QDL+IRE+NCK+  GII+LLN+  N +NI+GR L+ AK+ K+N+ + ++ N ++      +L+  +P+ LN+RSPL+C ++GSICQ+CYGWDLAQ+ LISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGI+TSE ++Q +  F
Sbjct:    1 MLITRTVTKKILETIVHETFSNFGSLSSSSLLDSLKFLGFYYATNAGISINIEDLKTPNVKKEFLKTATDEMSFVSQQWEQGFVSDTERFQTIIDSWNIATESLKNRIIDYYQNFDPANNLYIMAFSGARGNMSQVRQLVGMRGLMSDQEGKIIDLPIQTNFREGLSSIDYIISSYGARKGIVDTALKTADSGYLTRRLIYIAQDLIIREINCKTKNGIIVLLNKNTNCKNILGRHLLDAKEIKTNSQLHKFNNLLLDEKVLNQLKQKSPLSLNIRSPLTCESNGSICQSCYGWDLAQNNLISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIFTSELLQQTVAPF 346          
BLAST of mRNA_P-littoralis_Contig1346.2.2 vs. uniprot
Match: A0A3G2QZG6_9STRA (DNA-directed RNA polymerase n=1 Tax=Mallomonas splendens TaxID=52552 RepID=A0A3G2QZG6_9STRA)

HSP 1 Score: 463 bits (1192), Expect = 2.420e-155
Identity = 241/346 (69.65%), Postives = 284/346 (82.08%), Query Frame = 0
Query:    1 MFIANTITKKALETIVHETFLSLGSVPSSLLLDSLKLLGFYYATNAGISINIEDLKTPHKKEALIELAVKEIKIISKDWEKGTISDAERFQSIIDSWTVATESLKTKILKHYKNFDPTNNLHIMAFSGARGNISQVRQLIGMRGLMSDQEGKIIDLPIRANFREGLSSIDYMISSYGARKGIVDTALKTADSGYLTRRLIYTTQDLVIREVNCKSTTGIILLLNRKNNIQNIIGRFLISAKDKKSNTFIKEYKNTIITTSAAKKLRNLAPIVLNLRSPLSCSASGSICQNCYGWDLAQSTLISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIYTSENVRQLLHLF 346
            M +  T+TKK LET+VHETF   G+  SS LLDSLKLLGFYYAT AGISINIEDLKTP  K+  +E A  EI+ ISKDW++G ISD ERFQ+IID W +ATESLK +I+ +Y++FDP NNL+IMAFSGARGNISQVRQL+GMRGLMSDQEGKIIDLPI+ NFREGLSSIDY+ISSYGARKGIVDTALKTADSGYLTRRLIY  QDLVIRE+NC +T GII+LL + +NI+N+IGR LI AK +K N F+++   ++       KL+  AP+ LN+RS L+C ++GSICQ CYGWDLAQ  LISLGEAVGI+AAQSIGEPGTQLTMRTFHTGGI+T E  +Q+   F
Sbjct:    1 MLLTQTVTKKLLETLVHETFTQFGNFSSSSLLDSLKLLGFYYATIAGISINIEDLKTPDTKKKFLENANFEIEKISKDWQQGFISDTERFQTIIDIWNIATESLKNRIIDYYQHFDPANNLYIMAFSGARGNISQVRQLVGMRGLMSDQEGKIIDLPIQTNFREGLSSIDYIISSYGARKGIVDTALKTADSGYLTRRLIYIAQDLVIRELNCGTTEGIIILLKKNSNIKNLIGRTLIYAKSQK-NFFLQDLNLSLKEVDLI-KLKKSAPVQLNVRSSLTCKSNGSICQKCYGWDLAQQKLISLGEAVGILAAQSIGEPGTQLTMRTFHTGGIFTGETTKQIFAPF 344          
BLAST of mRNA_P-littoralis_Contig1346.2.2 vs. uniprot
Match: A0A3G2QZ15_9STRA (DNA-directed RNA polymerase n=1 Tax=Synura uvella TaxID=52557 RepID=A0A3G2QZ15_9STRA)

HSP 1 Score: 462 bits (1189), Expect = 5.060e-151
Identity = 238/346 (68.79%), Postives = 285/346 (82.37%), Query Frame = 0
Query:    1 MFIANTITKKALETIVHETFLSLGSVPSSLLLDSLKLLGFYYATNAGISINIEDLKTPHKKEALIELAVKEIKIISKDWEKGTISDAERFQSIIDSWTVATESLKTKILKHYKNFDPTNNLHIMAFSGARGNISQVRQLIGMRGLMSDQEGKIIDLPIRANFREGLSSIDYMISSYGARKGIVDTALKTADSGYLTRRLIYTTQDLVIREVNCKSTTGIILLLNRKNNIQNIIGRFLISAKDKKSNTFIKEYKNTIITTSAAKKLRNLAPIVLNLRSPLSCSASGSICQNCYGWDLAQSTLISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIYTSENVRQLLHLF 346
            M +  TITKK LETIVH+TF   G++ SS LLDSLKLLGFYYATNAGISINIEDLKTP  K+  ++ A KEI+ +S  W++G ISD ERFQSIID+W VATESLK +I+ +Y+NFDP NNL+IMAFSGARGN+SQVRQL+GMRGLMSDQEGKIIDLPI+ NFREGLSSIDY+ISSYGARKGIVDTALKTADSGYLTRRLIY  QDLVIRE++C++  G++ LL + ++I+NI+GR LIS K   SN  +   K  ++     K+L+  AP+ +N+RS L+C ++GSICQ CYGWDLAQS LISLGE+VGIIAAQSIGEPGTQLTMRTFHTGGI+T E  +Q+L  F
Sbjct:    1 MLLTRTITKKLLETIVHQTFTEFGNLSSSSLLDSLKLLGFYYATNAGISINIEDLKTPDVKKNFLKEANKEIEFVSTQWQEGFISDTERFQSIIDTWNVATESLKNRIIDYYQNFDPANNLYIMAFSGARGNMSQVRQLVGMRGLMSDQEGKIIDLPIQTNFREGLSSIDYIISSYGARKGIVDTALKTADSGYLTRRLIYIAQDLVIRELDCQTKEGLVFLLKKTSDIKNIVGRTLISIKP--SNNLL--LKKKLLDEEFLKELKKSAPLTINVRSSLTCKSNGSICQKCYGWDLAQSKLISLGESVGIIAAQSIGEPGTQLTMRTFHTGGIFTGETHKQVLAPF 342          
BLAST of mRNA_P-littoralis_Contig1346.2.2 vs. uniprot
Match: A0A3G2R082_9STRA (DNA-directed RNA polymerase n=1 Tax=Neotessella volvocina TaxID=2419522 RepID=A0A3G2R082_9STRA)

HSP 1 Score: 457 bits (1176), Expect = 2.790e-149
Identity = 236/351 (67.24%), Postives = 287/351 (81.77%), Query Frame = 0
Query:    1 MFIANTITKKALETIVHETFLSLGSVPSSLLLDSLKLLGFYYATNAGISINIEDLKTPHKKEALIELAVKEIKIISKDWEKGTISDAERFQSIIDSWTVATESLKTKILKHYKNFDPTNNLHIMAFSGARGNISQVRQLIGMRGLMSDQEGKIIDLPIRANFREGLSSIDYMISSYGARKGIVDTALKTADSGYLTRRLIYTTQDLVIREVNCKSTTGIILLLNRKNNIQNIIGRFLISA-KDKKSNTFIKEYKN--TIITTSA--AKKLRNLAPIVLNLRSPLSCSASGSICQNCYGWDLAQSTLISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIYTSENVRQLLHLF 346
            M I  T+TKK LETIVHETF   G + SS LLDSLKLLGFYYATNAGISINIEDL+TP  K+  IE+A KEI+ IS+ W++G +SD ERFQ+IID+W +ATESLK KI+ +Y+ FDP NNL+IMAFSGARGN+SQVRQL+GMRGLMSDQEGKIID+PI+ NFREGLSSIDY+ISSYGARKGIVDTALKTADSGYLTRRLIY  QDLVIRE +CK+  G++ + N+ + I+N+IGR LISA K + +   I +  N  +IIT +     + R   P++LN+RSPL+C ++GSICQ CYGWDLAQ+ L++LGEA+GIIAAQSIGEPGTQLTMRTFHTGGI+T E ++Q+   F
Sbjct:    1 MLITQTVTKKILETIVHETFTQFGILSSSSLLDSLKLLGFYYATNAGISINIEDLRTPEAKKKYIEIANKEIEHISEQWQQGFVSDIERFQNIIDNWNLATESLKNKIIDYYERFDPANNLYIMAFSGARGNMSQVRQLVGMRGLMSDQEGKIIDIPIQTNFREGLSSIDYIISSYGARKGIVDTALKTADSGYLTRRLIYIAQDLVIREQDCKTKQGVLFVFNKNSQIKNLIGRTLISARKIQSTEEVINQLPNDKSIITLNKDILNEFRFSTPLLLNVRSPLTCKSNGSICQKCYGWDLAQNKLVALGEAIGIIAAQSIGEPGTQLTMRTFHTGGIFTGETLKQIFAPF 351          
BLAST of mRNA_P-littoralis_Contig1346.2.2 vs. uniprot
Match: A0A3G2QYC8_9STRA (DNA-directed RNA polymerase n=1 Tax=Synura petersenii TaxID=52555 RepID=A0A3G2QYC8_9STRA)

HSP 1 Score: 446 bits (1147), Expect = 2.150e-144
Identity = 234/368 (63.59%), Postives = 277/368 (75.27%), Query Frame = 0
Query:    1 MFIANTITKKALETIVHETFLSLGSVPSSLLLDSLKLLGFYYATNAGISINIEDLKTPHKKEALIELAVKEIKIISKDWEKGTISDAERFQSIIDSWTVATESLKTKILKHYKNFDPTNNLHIMAFSGARGNISQVRQLIGMRGLMSDQEGKIIDLPIRANFREGLSSIDYMISSYGARKGIVDTALKTADSGYLTRRLIYTTQDLVIREVNCKSTTGIILLLNRKNNIQNIIGRFLIS-----------------AKDKKSNTFIK-----EYKNTIITTSAAKKLRNLAPIVLNLRSPLSCSASGSICQNCYGWDLAQSTLISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIYTSENVRQLLHLF 346
            M +  T+TKK LE IVHETF   G++ SS LLDSLKLLGFYYAT AGISINIEDLKTP  K+  ++ A KEI  +S  W++G ISD ERFQ+IID+W +ATE LK +I+ +Y+NFDP NNL+IMAFSGARGN+SQVRQL+GMRGLMSDQEGKIIDLPI+ NFREGLSSIDY+ISSYGARKGIVDTALKTADSGYLTRRLIY  QDLVIRE+NC +  GII LLN  +N +N+IGR L+S                 +K KK   F +     +  +  +     ++L   AP+ LN+RS L+C ++GSICQ CYGWDLAQ   ISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGI+T E  +Q+   F
Sbjct:    1 MLLTRTVTKKILEAIVHETFTQFGNLSSSSLLDSLKLLGFYYATTAGISINIEDLKTPDSKKEFLDNANKEIDFVSNQWQQGLISDTERFQTIIDTWNLATEGLKNRIIDYYQNFDPANNLYIMAFSGARGNMSQVRQLVGMRGLMSDQEGKIIDLPIQTNFREGLSSIDYIISSYGARKGIVDTALKTADSGYLTRRLIYVAQDLVIREINCSTKEGIIFLLNSNSNTKNLIGRTLLSIKSFLPIRSQNQTKFWFSKKKKKQEFFQTKILPKILDQTLNEELLQELIPFAPLTLNVRSSLTCKSNGSICQKCYGWDLAQGKKISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIFTGETNKQIFAPF 368          
BLAST of mRNA_P-littoralis_Contig1346.2.2 vs. uniprot
Match: A0A3G2QYQ5_9STRA (DNA-directed RNA polymerase n=1 Tax=Synura sphagnicola TaxID=52556 RepID=A0A3G2QYQ5_9STRA)

HSP 1 Score: 442 bits (1136), Expect = 4.900e-143
Identity = 227/349 (65.04%), Postives = 282/349 (80.80%), Query Frame = 0
Query:    1 MFIANTITKKALETIVHETFLSLGSVPSSLLLDSLKLLGFYYATNAGISINIEDLKTPHKKEALIELAVKEIKIISKDWEKGTISDAERFQSIIDSWTVATESLKTKILKHYKNFDPTNNLHIMAFSGARGNISQVRQLIGMRGLMSDQEGKIIDLPIRANFREGLSSIDYMISSYGARKGIVDTALKTADSGYLTRRLIYTTQDLVIREVNCKSTTGIILLLNRKNNIQNIIGRFLISAKDKKSNTFIKEYKNTIITT---SAAKKLRNLAPIVLNLRSPLSCSASGSICQNCYGWDLAQSTLISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIYTSENVRQLLHLF 346
            M +  T+TKK LE +V ETFL  G++ SS LLDSLKLLGFYYAT AGISINIEDLKTP  K+  ++ A +E+ ++S  W++G ISD ERFQSI+++W VATE+LK +I+ +Y+NFDPTNNL+IMAFSGARGN+SQVRQL+GMRGLMSDQEGKIIDLPI+ NFREGLSSIDY+ISSYGARKGIVDTALKTADSGYLTRRLIY  QDLVIRE NC +  GI+ LLN+K++I+N++GR LIS +  +  +F+    + ++T    ++ KK  N   ++LN+RS L+C ++ SICQ CYGWDL+Q+ LI LGEA+GIIA QSIGEPGTQLTMRTFHTGGI+T E   Q+L  F
Sbjct:    1 MVLTRTLTKKNLENLVSETFLQFGNLSSSSLLDSLKLLGFYYATVAGISINIEDLKTPDVKKTFLKNANEEVNLVSLQWQQGLISDTERFQSIMNTWNVATEALKNRIIDYYQNFDPTNNLYIMAFSGARGNMSQVRQLVGMRGLMSDQEGKIIDLPIQTNFREGLSSIDYIISSYGARKGIVDTALKTADSGYLTRRLIYIAQDLVIREPNCGTKKGILFLLNQKSDIKNLLGRTLISIQSSQKFSFLINNSDLLLTEPFLNSLKKKEN--SVILNVRSSLTCDSNNSICQKCYGWDLSQNQLIGLGEAIGIIAGQSIGEPGTQLTMRTFHTGGIFTGEMSNQILAPF 347          
BLAST of mRNA_P-littoralis_Contig1346.2.2 vs. uniprot
Match: A0A520D0Y3_9SPHI (DNA-directed RNA polymerase n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=A0A520D0Y3_9SPHI)

HSP 1 Score: 376 bits (965), Expect = 1.550e-121
Identity = 194/348 (55.75%), Postives = 260/348 (74.71%), Query Frame = 0
Query:    1 MFIANTITKKALETIVHETFLSLGSVPSSLLLDSLKLLGFYYATNAGISINIEDLKTPHKKEALIELAVKEIKIISKDWEKGTISDAERFQSIIDSWTVATESLKTKILKHYKNFDPTNNLHIMAFSGARGNISQVRQLIGMRGLMSDQEGKIIDLPIRANFREGLSSIDYMISSYGARKGIVDTALKTADSGYLTRRLIYTTQDLVIREVNCKSTTGIILLLNRKNNIQNIIGRFLI-------SAKDKKSNTFIKEYKNTIITTSAAKKLRNLAPIVLNLRSPLSCSASGSICQNCYGWDLAQSTLISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIYTSENVRQ 341
            M   +T+TKK LE +++E+F   G V +S LLDSLKL GF++ATNAGISI+IEDLKT   K  ++     +I +++  W++G +SD ERFQSII SW+ ATESLK++++ +Y+ +DP NNL IMA SGARG++SQVRQLIGMRGLMSD +GKII+LPI+ NFREGL+SIDY+ISSYGARKG VDTALKTADSGYLTRRLIY  Q ++IRE++C +  GI +      N+ N++GR ++       + ++KK+   ++E  +  + +   + L+ +A   L +RSPL+C +S S+CQ CYGWDL+ + ++ LG AVGIIAAQSIGEPGTQLTMRTFHTGGI+T   V Q
Sbjct:    1 MMPTSTVTKKILEKLIYESFYRFGEVTTSCLLDSLKLFGFFHATNAGISISIEDLKTSKDKIDILSETRNQIALVNNKWQQGKVSDTERFQSIIQSWSAATESLKSRMIDYYETYDPVNNLFIMASSGARGSMSQVRQLIGMRGLMSDPQGKIINLPIQTNFREGLTSIDYLISSYGARKGTVDTALKTADSGYLTRRLIYVAQGIIIRELDCHTIRGITIYSLENKNLNNLLGRKILFFDLLNNTIEEKKT---VEELCHEHLDSRRLQILKKIAFRSLIIRSPLTCDSSHSVCQACYGWDLSTTKIVDLGAAVGIIAAQSIGEPGTQLTMRTFHTGGIFTGSIVNQ 345          
BLAST of mRNA_P-littoralis_Contig1346.2.2 vs. uniprot
Match: A0A7S6PV88_9STRA (DNA-directed RNA polymerase n=1 Tax=Spumella sp. Baekdong012001B8 TaxID=2782410 RepID=A0A7S6PV88_9STRA)

HSP 1 Score: 379 bits (974), Expect = 3.340e-119
Identity = 198/344 (57.56%), Postives = 258/344 (75.00%), Query Frame = 0
Query:    1 MFIANTITKKALETIVHETFLSLGSVPSSLLLDSLKLLGFYYATNAGISINIEDLKTPHKKEALIELAVKEIKIISKDWEKGTISDAERFQSIIDSWTVATESLKTKILKHYKNFDPTNNLHIMAFSGARGNISQVRQLIGMRGLMSDQEGKIIDLPIRANFREGLSSIDYMISSYGARKGIVDTALKTADSGYLTRRLIYTTQDLVIREVNCKSTTGIILLLNRKNNIQNIIGRFLISAKDKKSNTFIKEYKNTIITTSAAKKL--RNLAPIVLNLRSPLSCSASGSICQNCYGWDLAQSTLISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIYTSENVRQL 342
            M I +T+ KKALE ++HE + +     +  LLD+LK LGF+YATN+G+SI+IEDLKTP  KE L++ A K I + S  WE+G ++DAERFQ+II +W   TE+LK +IL +Y+ FDP N+L++M+ SGARGNISQV QLIGMRGLM+DQ+G+IIDLPI +NFREGL+S DY++SSYGARKGIVDTAL+TAD+GYLTR LIY  QDL+IR  +C++  GI +L+  +++  +IIGR LIS   K   T   +   T +T   A+ L  ++  P  L +RS L+C A GS+CQ CYGWDLA+   I+LGEAVGIIAAQSIGEPGTQLTMRTFHTGG++  E   Q+
Sbjct:    1 MLINSTVGKKALEALIHEIYSNNSIYATESLLDALKNLGFHYATNSGLSISIEDLKTPLLKELLLQEANKVIALTSNKWEQGFVTDAERFQAIISTWAKLTENLKDQILAYYEEFDPLNSLYVMSSSGARGNISQVGQLIGMRGLMADQKGQIIDLPIESNFREGLTSTDYLVSSYGARKGIVDTALRTADAGYLTRTLIYLAQDLIIRAYDCETRNGISILIKCEDDFASIIGRSLISLTKKGKTT---QCYGTFLTEKLAQALSFKSAFPFTLKIRSILTCQAHGSVCQACYGWDLAERLPIALGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFAGEKTDQI 341          
BLAST of mRNA_P-littoralis_Contig1346.2.2 vs. uniprot
Match: A0A7T6Y7J5_9STRA (DNA-directed RNA polymerase n=1 Tax=Poterioochromonas malhamensis TaxID=88167 RepID=A0A7T6Y7J5_9STRA)

HSP 1 Score: 350 bits (898), Expect = 4.620e-113
Identity = 180/340 (52.94%), Postives = 254/340 (74.71%), Query Frame = 0
Query:    1 MFIANTITKKALETIVHETFLSLGSVPSSLLLDSLKLLGFYYATNAGISINIEDLKTPHKKEALIELAVKEIKIISKDWEKGTISDAERFQSIIDSWTVATESLKTKILKHYKNFDPTNNLHIMAFSGARGNISQVRQLIGMRGLMSDQEGKIIDLPIRANFREGLSSIDYMISSYGARKGIVDTALKTADSGYLTRRLIYTTQDLVIREVNCKSTTGIILLLNRKNNIQN-IIGRFLISAKDKKSNTFIKEYKNTIITTSAAKKLRNLAPIV--LNLRSPLSCSASGSICQNCYGWDLAQSTLISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIYTSE 337
            M +++ I K +LE I+ ++F + G++ +S LLDSLK +GFYY+T++G+S+ IEDLK P  K+ L+     +IK I   W+ G IS+ E+F+SI+++W + ++SLK K++ +YKN+DPTN+L++MAFSGARGNISQVRQ++GMRGLM +Q G II LPI  NF+EGLS+IDY+ISSYGARKGI+DTAL+TAD+GYLTRRLIY  QD+ IR++ C S     LL++ K N+ N ++GR L+  K  ++   +K   N +IT S    L+    I+  + +RS L+C+   S+CQ CYGWDL++  +ISLG++VGI+AA SIGEPGTQLTMRTFHTGGI+  +
Sbjct:    1 MILSSPINKSSLEEIIQQSFENFGTIFTSSLLDSLKNIGFYYSTSSGVSLTIEDLKIPLSKDYLLADVSTDIKNIEFAWKNGQISNTEKFKSIVNNWELISDSLKEKLIDYYKNYDPTNSLYLMAFSGARGNISQVRQVVGMRGLMVNQRGNIIQLPILTNFKEGLSTIDYIISSYGARKGIIDTALRTADAGYLTRRLIYLVQDISIRDICCNSNYS--LLIDLKKNLDNSLLGRTLVEIKYLQNQKRVK-LPNLLITQSLYNLLKKNTNIIQFIKIRSSLTCNIPNSLCQYCYGWDLSKKKIISLGDSVGIMAAHSIGEPGTQLTMRTFHTGGIFIGQ 337          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1346.2.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6PV05_9STRA9.550e-20487.86DNA-directed RNA polymerase n=1 Tax=Pedospumella s... [more]
A0A0D3ML31_9STRA1.940e-15969.08DNA-directed RNA polymerase n=1 Tax=Ochromonas sp.... [more]
A0A3G2QZG6_9STRA2.420e-15569.65DNA-directed RNA polymerase n=1 Tax=Mallomonas spl... [more]
A0A3G2QZ15_9STRA5.060e-15168.79DNA-directed RNA polymerase n=1 Tax=Synura uvella ... [more]
A0A3G2R082_9STRA2.790e-14967.24DNA-directed RNA polymerase n=1 Tax=Neotessella vo... [more]
A0A3G2QYC8_9STRA2.150e-14463.59DNA-directed RNA polymerase n=1 Tax=Synura peterse... [more]
A0A3G2QYQ5_9STRA4.900e-14365.04DNA-directed RNA polymerase n=1 Tax=Synura sphagni... [more]
A0A520D0Y3_9SPHI1.550e-12155.75DNA-directed RNA polymerase n=1 Tax=Pedobacter sp.... [more]
A0A7S6PV88_9STRA3.340e-11957.56DNA-directed RNA polymerase n=1 Tax=Spumella sp. B... [more]
A0A7T6Y7J5_9STRA4.620e-11352.94DNA-directed RNA polymerase n=1 Tax=Poterioochromo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007066RNA polymerase Rpb1, domain 3PFAMPF04983RNA_pol_Rpb1_3coord: 6..55
e-value: 8.0E-7
score: 29.1
IPR038120RNA polymerase Rpb1, funnel domain superfamilyGENE3D1.10.132.30coord: 52..189
e-value: 2.3E-50
score: 172.3
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 165..337
e-value: 1.8E-40
score: 139.1
IPR042102RNA polymerase Rpb1, domain 3 superfamilyGENE3D1.10.274.100RNA polymerase Rpb1, domain 3coord: 1..51
e-value: 2.6E-9
score: 39.3
IPR007083RNA polymerase Rpb1, domain 4PFAMPF05000RNA_pol_Rpb1_4coord: 84..153
e-value: 1.3E-13
score: 50.8
IPR045867DNA-directed RNA polymerase, subunit beta-primePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 9..337
NoneNo IPR availablePANTHERPTHR19376:SF58DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''coord: 9..337
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 3..340

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1346contigP-littoralis_Contig1346:18044..19096 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1346.2.2mRNA_P-littoralis_Contig1346.2.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig1346 12767..21292 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1346.2.2 ID=prot_P-littoralis_Contig1346.2.2|Name=mRNA_P-littoralis_Contig1346.2.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=351bp
MFIANTITKKALETIVHETFLSLGSVPSSLLLDSLKLLGFYYATNAGISI
NIEDLKTPHKKEALIELAVKEIKIISKDWEKGTISDAERFQSIIDSWTVA
TESLKTKILKHYKNFDPTNNLHIMAFSGARGNISQVRQLIGMRGLMSDQE
GKIIDLPIRANFREGLSSIDYMISSYGARKGIVDTALKTADSGYLTRRLI
YTTQDLVIREVNCKSTTGIILLLNRKNNIQNIIGRFLISAKDKKSNTFIK
EYKNTIITTSAAKKLRNLAPIVLNLRSPLSCSASGSICQNCYGWDLAQST
LISLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIYTSENVRQLLHLFLENS
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007066RNA_pol_Rpb1_3
IPR038120Rpb1_funnel_sf
IPR007081RNA_pol_Rpb1_5
IPR042102RNA_pol_Rpb1_3_sf
IPR007083RNA_pol_Rpb1_4
IPR045867DNA-dir_RpoC_beta_prime