mRNA_P-littoralis_Contig1344.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1344.3.1
Unique NamemRNA_P-littoralis_Contig1344.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1344.3.1 vs. uniprot
Match: A0A6H5LCY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCY2_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.330e-48
Identity = 103/246 (41.87%), Postives = 142/246 (57.72%), Query Frame = 2 
Query:    2 GWFKEYTGADVIVGGNALPAVIPPHNMSQAAQNLVAETLEGYDDPDD-EDQAEENLAEAALTAAENFAEEHGLEIREASAGGGLWATQDLRMDERVPFFAQGHFSVMTPSELIDGAQEDGVARHVVCDSAVLRTLLSDGEVIASQDRTLLVIALDPSCFLYYMNSCQDSPDDQNLSRNSIFQTKLPTKDTAAGFLVDAEAGVAFTISREIKKGEQLMYVFPARKNATVTGVGSSGGGGEVALPARR 736
            GWFK    A V +GG+ LPA  P HNMSQA+Q  +     GYD+ DD       NL  A  TAAE      GLEIR+A+ GGGLW  QD    E +P F QG + ++T  +L+   + DG  R+VVC + +L  L+ DG+  A     LLV+ LDPSCFLYYMN+C      +N+ R  +F TK P ++TA G L DAE G++F+++  +  G +L++ FP+R +     +G    GG  A P+ R
Sbjct:  762 GWFKALANAGVPLGGSVLPAGFPSHNMSQASQVDIENIRHGYDEDDDGSGPGGWNLEFAKRTAAE-----FGLEIRDATKGGGLWTIQD---QEIMPMFGQGQYELLTSDQLLAAVENDGKPRYVVCGTELLAALVVDGQYDAGSG-LLLVLRLDPSCFLYYMNACDAGDSKENIERRDLFGTKSPNQETAPGLLADAENGLSFSMTSPVTAGTELLHYFPSRASVKRARIGVEAEGGAGASPSGR 998
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1344.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LCY2_9PHAE1.330e-4841.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1344contigP-littoralis_Contig1344:6094..7517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1081
Hectar predicted targeting categoryother localisation
Exons2
Cds size693
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789619.119031-UTR-P-littoralis_Contig1344:6093..61721680789619.119031-UTR-P-littoralis_Contig1344:6093..6172Pylaiella littoralis U1_48UTRP-littoralis_Contig1344 6094..6172 +
1680789619.152786-UTR-P-littoralis_Contig1344:7208..75171680789619.152786-UTR-P-littoralis_Contig1344:7208..7517Pylaiella littoralis U1_48UTRP-littoralis_Contig1344 7209..7517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789619.1324413-CDS-P-littoralis_Contig1344:6172..63191680789619.1324413-CDS-P-littoralis_Contig1344:6172..6319Pylaiella littoralis U1_48CDSP-littoralis_Contig1344 6173..6319 +
1680789619.1431077-CDS-P-littoralis_Contig1344:6662..72081680789619.1431077-CDS-P-littoralis_Contig1344:6662..7208Pylaiella littoralis U1_48CDSP-littoralis_Contig1344 6663..7208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1344.3.1prot_P-littoralis_Contig1344.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1344 6173..7208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1344.3.1

>prot_P-littoralis_Contig1344.3.1 ID=prot_P-littoralis_Contig1344.3.1|Name=mRNA_P-littoralis_Contig1344.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=231bp
MSQAAQNLVAETLEGYDDPDDEDQAEENLAEAALTAAENFAEEHGLEIRE
ASAGGGLWATQDLRMDERVPFFAQGHFSVMTPSELIDGAQEDGVARHVVC
DSAVLRTLLSDGEVIASQDRTLLVIALDPSCFLYYMNSCQDSPDDQNLSR
NSIFQTKLPTKDTAAGFLVDAEAGVAFTISREIKKGEQLMYVFPARKNAT
VTGVGSSGGGGEVALPARRNDRRTARVQAA*
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mRNA from alignment at P-littoralis_Contig1344:6094..7517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1344.3.1 ID=mRNA_P-littoralis_Contig1344.3.1|Name=mRNA_P-littoralis_Contig1344.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1424bp|location=Sequence derived from alignment at P-littoralis_Contig1344:6094..7517+ (Pylaiella littoralis U1_48)
CGGGTGGTTCAAGGAGTACACTGGTGCAGACGTTATCGTAGGGGGGAACG
CTTTACCGGCGGTCATCCCTCCGCACAACATGTCTCAAGCCGCGCAGAAT
CTTGTGGCAGAGACGTTAGAGGGGTACGACGACCCCGACGACGAAGATCA
GGCCGAGGAAAACCTCGCTGAGGCCGCCCTCACTGCCGCTGAGAACTTCG
CTGAGGAGCATGGGCTTGAAATCAGGGTAGGTTGTTTGATTTCTGCCAGA
TTTCGTCGTGTTCAACTTTCACCCTTGTATACATGCCACAGTTTCGCTTC
AAACTGCAGGAATGATGGGCCATCGCAACTGAAAGAAATGCTAGGTTTCA
AAATGTAGGGTCTGTGCGAACGTTAAATGTACTGGATCGCCGTTGATAGC
AAAGTTTGGTCTCACGCTGCACCAACCTAAAAACGAATTGATGCTGCATT
TTGATCTCACGCTGTGTTTCAAACCCCTGACGTTCAAAGCTTTTGTGTAA
GGCCCGCGCGCCTTAAATCTCAATTTGTATTTTTGTTCCATGTGGCTCTT
TTATTGTGCCGACTGTCAGGAAGCCTCTGCTGGTGGAGGGTTGTGGGCAA
CTCAAGATCTACGCATGGACGAAAGGGTGCCGTTTTTCGCACAGGGTCAT
TTTAGCGTGATGACCCCTAGCGAATTGATTGACGGCGCGCAAGAGGATGG
GGTAGCGCGGCATGTTGTGTGCGATTCTGCGGTGTTGCGTACCTTGCTCA
GCGATGGGGAGGTTATTGCTTCCCAAGATCGGACGCTTCTAGTTATCGCG
CTCGATCCATCATGCTTCCTTTACTACATGAACTCATGTCAAGATAGCCC
AGACGACCAAAACTTGAGCAGGAATTCCATTTTCCAGACGAAGTTGCCAA
CGAAGGACACAGCGGCAGGGTTTTTAGTCGATGCCGAAGCGGGTGTAGCG
TTTACGATCAGCCGCGAGATAAAGAAGGGAGAACAACTGATGTATGTGTT
CCCAGCCCGTAAAAATGCGACCGTTACGGGTGTAGGAAGCTCTGGAGGTG
GCGGAGAGGTAGCTTTGCCTGCTAGGAGAAACGACAGGCGTACGGCGAGA
GTGCAGGCAGCGTGAGACGGCGGTTGTTGTAGTTCGTCATCTGGTACACA
GGCGCGACACGTTTTGCTCGCATGGTGGTGCATTGGTTTGTGTGGTCAGG
GTTAATGGTTGATCGTCTTCATTTTGTAGAGGATTGTTTGATCGAACATG
CATGCATGCATGCACAAGGGCCAAAGAAATGGAGGGAGACGAGAGCGGGA
CAAAAACATTTATTGGTGGTACCATTCATTTTACATAGTCAAAATTTGAA
GAGCGGAACGAATATATAAGTGTTTCAGCCAACAAACACATTTTTTTGGA
ATGAACAAACAACCATTAACTCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1344:6094..7517+

>mRNA_P-littoralis_Contig1344.3.1 ID=mRNA_P-littoralis_Contig1344.3.1|Name=mRNA_P-littoralis_Contig1344.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=693bp|location=Sequence derived from alignment at P-littoralis_Contig1344:6094..7517+ (Pylaiella littoralis U1_48)
ATGTCTCAAGCCGCGCAGAATCTTGTGGCAGAGACGTTAGAGGGGTACGA
CGACCCCGACGACGAAGATCAGGCCGAGGAAAACCTCGCTGAGGCCGCCC
TCACTGCCGCTGAGAACTTCGCTGAGGAGCATGGGCTTGAAATCAGGGAA
GCCTCTGCTGGTGGAGGGTTGTGGGCAACTCAAGATCTACGCATGGACGA
AAGGGTGCCGTTTTTCGCACAGGGTCATTTTAGCGTGATGACCCCTAGCG
AATTGATTGACGGCGCGCAAGAGGATGGGGTAGCGCGGCATGTTGTGTGC
GATTCTGCGGTGTTGCGTACCTTGCTCAGCGATGGGGAGGTTATTGCTTC
CCAAGATCGGACGCTTCTAGTTATCGCGCTCGATCCATCATGCTTCCTTT
ACTACATGAACTCATGTCAAGATAGCCCAGACGACCAAAACTTGAGCAGG
AATTCCATTTTCCAGACGAAGTTGCCAACGAAGGACACAGCGGCAGGGTT
TTTAGTCGATGCCGAAGCGGGTGTAGCGTTTACGATCAGCCGCGAGATAA
AGAAGGGAGAACAACTGATGTATGTGTTCCCAGCCCGTAAAAATGCGACC
GTTACGGGTGTAGGAAGCTCTGGAGGTGGCGGAGAGGTAGCTTTGCCTGC
TAGGAGAAACGACAGGCGTACGGCGAGAGTGCAGGCAGCGTGA
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