mRNA_P-littoralis_Contig1344.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1344.2.1
Unique NamemRNA_P-littoralis_Contig1344.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1344.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1344contigP-littoralis_Contig1344:2946..3367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size405
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789618.9329755-UTR-P-littoralis_Contig1344:2945..30381680789618.9329755-UTR-P-littoralis_Contig1344:2945..3038Pylaiella littoralis U1_48UTRP-littoralis_Contig1344 2946..3038 -
1680789618.970368-UTR-P-littoralis_Contig1344:3331..33671680789618.970368-UTR-P-littoralis_Contig1344:3331..3367Pylaiella littoralis U1_48UTRP-littoralis_Contig1344 3332..3367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789618.9423776-CDS-P-littoralis_Contig1344:3038..30621680789618.9423776-CDS-P-littoralis_Contig1344:3038..3062Pylaiella littoralis U1_48CDSP-littoralis_Contig1344 3039..3062 -
1680789618.9582472-CDS-P-littoralis_Contig1344:3079..33311680789618.9582472-CDS-P-littoralis_Contig1344:3079..3331Pylaiella littoralis U1_48CDSP-littoralis_Contig1344 3080..3331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1344.2.1prot_P-littoralis_Contig1344.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1344 3039..3331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1344.2.1

>prot_P-littoralis_Contig1344.2.1 ID=prot_P-littoralis_Contig1344.2.1|Name=mRNA_P-littoralis_Contig1344.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
MKYFEQSPVAISFLIPLQSGKKGKGRTSKDGHRRVGETSTNCHEKNKEKK
YQTRWSVVRNIDIPSLSKHPLSKAKKARHAQKYMLKIQTTQ*
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mRNA from alignment at P-littoralis_Contig1344:2946..3367-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1344.2.1 ID=mRNA_P-littoralis_Contig1344.2.1|Name=mRNA_P-littoralis_Contig1344.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=422bp|location=Sequence derived from alignment at P-littoralis_Contig1344:2946..3367- (Pylaiella littoralis U1_48)
TACGTCTCGACCAGCCGGATCAACCCGTCATGGTGAATGAAATACTTCGA
ACAAAGCCCCGTCGCGATAAGCTTCCTCATCCCCCTTCAAAGCGGAAAGA
AAGGCAAAGGACGAACTTCAAAAGATGGCCATCGAAGAGTGGGCGAAACA
TCGACAAATTGTCATGAGAAAAACAAAGAGAAAAAATATCAAACGCGCTG
GAGTGTGGTACGAAATATTGATATTCCTTCTCTTTCAAAACACCCGCTTT
CGAAAGCAAAAAAAGCACGACACGCACAGAAATATATGGCATATGCTGTC
GAAAGCTAAAAATTCAAACTACTCAATAAAGGCACTTACTCGCGGAGGTC
CGACGACCACCCAGCACGCGGAACGATTGCCTCGAGCCTCTCGACCTCGA
GCCCAACATTAACCGCGGTTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1344:2946..3367-

>mRNA_P-littoralis_Contig1344.2.1 ID=mRNA_P-littoralis_Contig1344.2.1|Name=mRNA_P-littoralis_Contig1344.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig1344:2946..3367- (Pylaiella littoralis U1_48)
ATGAAATACTTCGAACAAAGCCCCGTCGCGATAAGCTTCCTCATCCCCCT
TCAAAGCGGAAAGAAAGGCAAAGGACGAACTTCAAAAGATGGCCATCGAA
GAGTGGGCGAAACATCGACAAATTGTCATGAGAAAAACAAAGAGAAAAAA
TATCAAACGCGCTGGAGTGTGGTACGAAATATTGATATTCCTTCTCTTTC
AAAACACCCGCTTTCGAAAGCAAAAAAAGCACGACACGCACAGAAATATA
TGCTAAAAATTCAAACTACTCAATAA
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