mRNA_P-littoralis_Contig1342.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1342.3.1
Unique NamemRNA_P-littoralis_Contig1342.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1342.3.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 81.3 bits (199), Expect = 1.900e-18
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:   10 NRASCVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDIRR 177
            NR+S V+ HS +HA  HIPEAQ AFK+LMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:   64 NRSSGVHEHSTRHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 119
[Close]
BLAST of mRNA_P-littoralis_Contig1342.3.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 8.160e-18
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   19 SCVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDIRR 177
            S ++RHSDKHA   IP+AQ AFK+LMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:    2 SGIHRHSDKHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 54
[Close]
BLAST of mRNA_P-littoralis_Contig1342.3.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS)

HSP 1 Score: 75.9 bits (185), Expect = 8.910e-17
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   13 RASCVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDI 171
            R S V+ HSDKHA  H P+AQ AFK LMIH +LQ A RIAFRCVLHRCG QDI
Sbjct:   25 RLSGVSGHSDKHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCGIQDI 77
[Close]
BLAST of mRNA_P-littoralis_Contig1342.3.1 vs. uniprot
Match: K0S3C5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3C5_THAOC)

HSP 1 Score: 69.3 bits (168), Expect = 2.890e-14
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   19 SCVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDI 171
            S V  HSDKHA  + P+AQ AFK+LMIH +LQ   RIA RCVLHRCG QDI
Sbjct:   20 SGVQGHSDKHALGNYPKAQCAFKILMIHEVLQFVLRIAVRCVLHRCGIQDI 70
[Close]
BLAST of mRNA_P-littoralis_Contig1342.3.1 vs. uniprot
Match: R1EX34_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EX34_EMIHU)

HSP 1 Score: 63.5 bits (153), Expect = 1.970e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   36 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 176
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
[Close]
BLAST of mRNA_P-littoralis_Contig1342.3.1 vs. uniprot
Match: R1ESX1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ESX1_EMIHU)

HSP 1 Score: 63.5 bits (153), Expect = 2.010e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   36 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 176
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
[Close]
BLAST of mRNA_P-littoralis_Contig1342.3.1 vs. uniprot
Match: R1D6I6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D6I6_EMIHU)

HSP 1 Score: 63.5 bits (153), Expect = 2.720e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   36 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 176
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
[Close]
BLAST of mRNA_P-littoralis_Contig1342.3.1 vs. uniprot
Match: R1D5C4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5C4_EMIHU)

HSP 1 Score: 63.5 bits (153), Expect = 2.720e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   36 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 176
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
[Close]
BLAST of mRNA_P-littoralis_Contig1342.3.1 vs. uniprot
Match: R1E1Y9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E1Y9_EMIHU)

HSP 1 Score: 63.5 bits (153), Expect = 1.280e-10
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   36 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 176
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:  104 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 150
[Close]
BLAST of mRNA_P-littoralis_Contig1342.3.1 vs. uniprot
Match: R1C158_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C158_EMIHU)

HSP 1 Score: 63.5 bits (153), Expect = 1.530e-10
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   36 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 176
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:  104 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1342.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A524MI88_9PROT1.900e-1869.64Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
A0A1E7F0G0_9STRA8.160e-1869.81Uncharacterized protein (Fragment) n=2 Tax=Fragila... [more]
B8CEF4_THAPS8.910e-1771.70Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0S3C5_THAOC2.890e-1466.67Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
R1EX34_EMIHU1.970e-1170.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1ESX1_EMIHU2.010e-1170.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1D6I6_EMIHU2.720e-1170.21Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
R1D5C4_EMIHU2.720e-1170.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1E1Y9_EMIHU1.280e-1070.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1C158_EMIHU1.530e-1070.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1342contigP-littoralis_Contig1342:18048..18227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog35128.Thaps30335
Model size180
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.46e-17
EggNOG OGs2F8R5@1|root,2T9VT@2759|Eukaryota,2XH3Y@2836|Bacillariophyta
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789618.8086107-CDS-P-littoralis_Contig1342:18047..182271680789618.8086107-CDS-P-littoralis_Contig1342:18047..18227Pylaiella littoralis U1_48CDSP-littoralis_Contig1342 18048..18227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1342.3.1prot_P-littoralis_Contig1342.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1342 18048..18227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1342.3.1

>prot_P-littoralis_Contig1342.3.1 ID=prot_P-littoralis_Contig1342.3.1|Name=mRNA_P-littoralis_Contig1342.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=60bp
EERNRASCVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLH
RCGSQDIRR*
back to top

mRNA from alignment at P-littoralis_Contig1342:18048..18227-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1342.3.1 ID=mRNA_P-littoralis_Contig1342.3.1|Name=mRNA_P-littoralis_Contig1342.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=180bp|location=Sequence derived from alignment at P-littoralis_Contig1342:18048..18227- (Pylaiella littoralis U1_48)
GAAGAGCGGAACCGGGCGAGTTGTGTCAACAGACACTCCGACAAGCATGC
TCCCAGGCATATCCCGGAAGCGCAAGATGCGTTCAAAGTTTTGATGATTC
ACTGGATTCTGCAAGTCGCAAGACGTATCGCATTTCGCTGCGTTCTTCAT
CGTTGTGGGAGCCAAGACATCCGTCGCTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1342:18048..18227-

>mRNA_P-littoralis_Contig1342.3.1 ID=mRNA_P-littoralis_Contig1342.3.1|Name=mRNA_P-littoralis_Contig1342.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=180bp|location=Sequence derived from alignment at P-littoralis_Contig1342:18048..18227- (Pylaiella littoralis U1_48)
GAAGAGCGGAACCGGGCGAGTTGTGTCAACAGACACTCCGACAAGCATGC
TCCCAGGCATATCCCGGAAGCGCAAGATGCGTTCAAAGTTTTGATGATTC
ACTGGATTCTGCAAGTCGCAAGACGTATCGCATTTCGCTGCGTTCTTCAT
CGTTGTGGGAGCCAAGACATCCGTCGCTGA
back to top