mRNA_P-littoralis_Contig1341.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig1341.1.1
Unique Name	mRNA_P-littoralis_Contig1341.1.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig1341.1.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 5.700e-49
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 1

Query:   82 FLLPTAGMPCIPVFENNQGAIQIAHNPITNSNSQHIDVRHHFIRELVKRKEFSITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 342
            F+LP AGMPCIPVFE+NQGAIQIAHNPITNSNS+HIDVRHHFIRELV+RKE SITHVTSE+QHADFLTKAIS+ESF LHR FVMNLQ
Sbjct:   33 FMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 119

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BLAST of mRNA_P-littoralis_Contig1341.1.1 vs. uniprot
Match: A0A6H5K826_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K826_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.290e-44
Identity = 71/87 (81.61%), Postives = 79/87 (90.80%), Query Frame = 1

Query:   82 FLLPTAGMPCIPVFENNQGAIQIAHNPITNSNSQHIDVRHHFIRELVKRKEFSITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 342
            F+LP AGMPCIPVFE+NQGAIQIAHNPITNSNS+HIDVRHHFIRELV+RKE SITHV +++QHADFLTKAI +E   LHR FVMNLQ
Sbjct:   17 FMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAICKEPCALHRDFVMNLQ 103

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BLAST of mRNA_P-littoralis_Contig1341.1.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.790e-43
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 1

Query:   82 FLLPTAGMPCIPVFENNQGAIQIAHNPITNSNSQHIDVRHHFIRELVKRKEFSITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 342
            F+LP AGMPCIPVFE+NQGAIQIAHNPITNSNS+HIDVRHHFIRELV+RKE SITHVTSE+QHADFLTKAIS+ESF LHR FVMNLQ
Sbjct: 1386 FMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 1472

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BLAST of mRNA_P-littoralis_Contig1341.1.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 3.870e-43
Identity = 73/87 (83.91%), Postives = 81/87 (93.10%), Query Frame = 1

Query:   82 FLLPTAGMPCIPVFENNQGAIQIAHNPITNSNSQHIDVRHHFIRELVKRKEFSITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 342
            F+LP AGMPCIPVFE+NQGAIQIAHNPITNSNS+HIDVRHHFIRELV+RKE SIT+V + +QHADFLTKAIS+ESF LHR FVMNLQ
Sbjct:  235 FMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNLQ 321

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BLAST of mRNA_P-littoralis_Contig1341.1.1 vs. uniprot
Match: A0A6H5KBS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS9_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 4.000e-43
Identity = 78/98 (79.59%), Postives = 85/98 (86.73%), Query Frame = 1

Query:   46 LEGSVVFEAGLAFLLPTAGMPCIPVFENNQGAIQIAHNPITNSNSQHIDVRHHFIRELVKRKEFSITHVTSEYQHADFLTKAISRESFDLHRGFVMNL 339
            L+G +    G  F+LP AGMPCIPVFE+NQGAIQIA NPITNSNS+HIDVRHHFIRELV RKE SITHVTSE+QHADFLTKAIS+ESF LHR FVMNL
Sbjct:  167 LKGVLFLRQGWRFMLPDAGMPCIPVFEDNQGAIQIAQNPITNSNSKHIDVRHHFIRELVMRKEISITHVTSEFQHADFLTKAISKESFALHRYFVMNL 264

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BLAST of mRNA_P-littoralis_Contig1341.1.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 5.630e-43
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 1

Query:   82 FLLPTAGMPCIPVFENNQGAIQIAHNPITNSNSQHIDVRHHFIRELVKRKEFSITHVTSEYQHADFLTKAISRESFDLHRGFVMNL 339
            F+LP AGMPCIPVFE+N   IQIAHNPITNSNS+HIDVRHHFIRELV+RKE SITHVTSE+QH D LTKAIS+ESF LHR FVMNL
Sbjct:   83 FMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESFALHRDFVMNL 168

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BLAST of mRNA_P-littoralis_Contig1341.1.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 7.900e-43
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = 1

Query:   82 FLLPTAGMPCIPVFENNQGAIQIAHNPITNSNSQHIDVRHHFIRELVKRKEFSITHVTSEYQHADFLTKAISRESFDLHRGFVM 333
            F+LP AGMPCIPVFE+NQGAIQIAHNPITNSNS+HIDVRHHFIRELV+RKE SITHVTSE+QHADFLTKA S+ESF LHR FV+
Sbjct:  225 FMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKATSKESFALHRDFVI 308

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BLAST of mRNA_P-littoralis_Contig1341.1.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.620e-42
Identity = 73/87 (83.91%), Postives = 80/87 (91.95%), Query Frame = 1

Query:   82 FLLPTAGMPCIPVFENNQGAIQIAHNPITNSNSQHIDVRHHFIRELVKRKEFSITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 342
            F+LP AGMPCIPVFE+NQGAIQIAHNPITNSNS+HIDVRHHFIRELV+RKE SITHV + +QHADFLTKAIS+ES  LHR FVMNLQ
Sbjct:  352 FMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNLQ 438

[Close]

BLAST of mRNA_P-littoralis_Contig1341.1.1 vs. uniprot
Match: A0A6H5KPI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPI2_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.770e-42
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 1

Query:  103 MPCIPVFENNQGAIQIAHNPITNSNSQHIDVRHHFIRELVKRKEFSITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 342
            MPCIPVFE+NQGAIQIAHNPITNSNS+HIDVRHHFIRELV+RKE S THVTSE+QHADFLTKAIS+E F LHR FVMN Q
Sbjct:    1 MPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISNTHVTSEFQHADFLTKAISKEPFALHRDFVMNSQ 80

[Close]

BLAST of mRNA_P-littoralis_Contig1341.1.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.880e-42
Identity = 72/87 (82.76%), Postives = 80/87 (91.95%), Query Frame = 1

Query:   82 FLLPTAGMPCIPVFENNQGAIQIAHNPITNSNSQHIDVRHHFIRELVKRKEFSITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 342
            F+LP A MPCIPVFE+NQGAIQI HNPITNSNS+HIDVRHHFIRELV+RKE SITHV +++QHADFLTKAIS+ESF LHR FVMNLQ
Sbjct:  290 FMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNLQ 376

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1341.1.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1341.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JNH6_9PHAE	5.700e-49	88.51	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K826_9PHAE	1.290e-44	81.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JHY5_9PHAE	1.790e-43	88.51	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KP70_9PHAE	3.870e-43	83.91	Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KBS9_9PHAE	4.000e-43	79.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTT9_9PHAE	5.630e-43	82.56	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K684_9PHAE	7.900e-43	85.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JEF2_9PHAE	1.620e-42	83.91	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KPI2_9PHAE	1.770e-42	86.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L4G9_9PHAE	1.880e-42	82.76	Reverse transcriptase Ty1/copia-type domain-contai...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig1341	contig	P-littoralis_Contig1341:1590..1934 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	7070.TC002223-PA
PFAMs	DUF4219,MBD,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size	345
Max annot lvl	33208\|Metazoa
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.56e-13
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BI7U@33208\|Metazoa,3CTS1@33213\|Bilateria,41WYJ@6656\|Arthropoda,3SH01@50557\|Insecta
Description	Encoded by
Cds size	243
COG category	L

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789618.727844-CDS-P-littoralis_Contig1341:1589..1832	1680789618.727844-CDS-P-littoralis_Contig1341:1589..1832	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1341 1590..1832 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789618.741801-UTR-P-littoralis_Contig1341:1832..1934	1680789618.741801-UTR-P-littoralis_Contig1341:1832..1934	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig1341 1833..1934 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig1341.1.1	prot_P-littoralis_Contig1341.1.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig1341 1590..1832 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig1341:1590..1934-
coding sequence from alignment at P-littoralis_Contig1341:1590..1934-

protein sequence of mRNA_P-littoralis_Contig1341.1.1

>prot_P-littoralis_Contig1341.1.1 ID=prot_P-littoralis_Contig1341.1.1|Name=mRNA_P-littoralis_Contig1341.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=81bp
MPCIPVFENNQGAIQIAHNPITNSNSQHIDVRHHFIRELVKRKEFSITHV
TSEYQHADFLTKAISRESFDLHRGFVMNLQ*

mRNA from alignment at P-littoralis_Contig1341:1590..1934-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig1341.1.1 ID=mRNA_P-littoralis_Contig1341.1.1|Name=mRNA_P-littoralis_Contig1341.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig1341:1590..1934- (Pylaiella littoralis U1_48)
GTGAGTTTTCTAGAAGTAGTGCCGTTTGTATTTTTCGATTGATGTCTTGA
AGGAAGTGTTGTTTTTGAGGCAGGTTTGGCGTTTTTGTTGCCAACAGCGG
GCATGCCTTGCATCCCAGTGTTCGAGAACAACCAGGGTGCGATTCAGATC
GCCCACAATCCAATCACCAACTCGAACTCGCAGCACATAGACGTACGGCA
TCACTTTATCAGGGAACTGGTAAAGAGGAAGGAGTTTTCGATCACACACG
TGACATCGGAATATCAGCATGCAGATTTCTTGACGAAAGCAATCAGCAGG
GAGTCTTTTGACCTGCACCGTGGTTTTGTGATGAATTTGCAATAA

Coding sequence (CDS) from alignment at P-littoralis_Contig1341:1590..1934-

>mRNA_P-littoralis_Contig1341.1.1 ID=mRNA_P-littoralis_Contig1341.1.1|Name=mRNA_P-littoralis_Contig1341.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=243bp|location=Sequence derived from alignment at P-littoralis_Contig1341:1590..1934- (Pylaiella littoralis U1_48)
ATGCCTTGCATCCCAGTGTTCGAGAACAACCAGGGTGCGATTCAGATCGC
CCACAATCCAATCACCAACTCGAACTCGCAGCACATAGACGTACGGCATC
ACTTTATCAGGGAACTGGTAAAGAGGAAGGAGTTTTCGATCACACACGTG
ACATCGGAATATCAGCATGCAGATTTCTTGACGAAAGCAATCAGCAGGGA
GTCTTTTGACCTGCACCGTGGTTTTGTGATGAATTTGCAATAA