mRNA_P-littoralis_Contig1340.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1340.5.1
Unique NamemRNA_P-littoralis_Contig1340.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1340.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1340contigP-littoralis_Contig1340:23113..26919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size573
Hectar predicted targeting categoryother localisation
Exons4
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789618.6473408-CDS-P-littoralis_Contig1340:23112..233961680789618.6473408-CDS-P-littoralis_Contig1340:23112..23396Pylaiella littoralis U1_48CDSP-littoralis_Contig1340 23113..23396 -
1680789618.657533-CDS-P-littoralis_Contig1340:23417..234751680789618.657533-CDS-P-littoralis_Contig1340:23417..23475Pylaiella littoralis U1_48CDSP-littoralis_Contig1340 23418..23475 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789618.6709182-UTR-P-littoralis_Contig1340:23475..235041680789618.6709182-UTR-P-littoralis_Contig1340:23475..23504Pylaiella littoralis U1_48UTRP-littoralis_Contig1340 23476..23504 -
1680789618.6826222-UTR-P-littoralis_Contig1340:23534..236531680789618.6826222-UTR-P-littoralis_Contig1340:23534..23653Pylaiella littoralis U1_48UTRP-littoralis_Contig1340 23535..23653 -
1680789618.691403-UTR-P-littoralis_Contig1340:26837..269191680789618.691403-UTR-P-littoralis_Contig1340:26837..26919Pylaiella littoralis U1_48UTRP-littoralis_Contig1340 26838..26919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1340.5.1prot_P-littoralis_Contig1340.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1340 23113..23475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1340.5.1

>prot_P-littoralis_Contig1340.5.1 ID=prot_P-littoralis_Contig1340.5.1|Name=mRNA_P-littoralis_Contig1340.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MAGGHTKMAGEWKQPGLTPWQVNDECQGAQSQEYMASTKRLATEVGDTSA
AINLRVVPKRSMVDSVSYHSSMVVKVLLTACGHNGCAGRDDIDQILKIVV
LESSAQEANRLHEE
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mRNA from alignment at P-littoralis_Contig1340:23113..26919-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1340.5.1 ID=mRNA_P-littoralis_Contig1340.5.1|Name=mRNA_P-littoralis_Contig1340.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3807bp|location=Sequence derived from alignment at P-littoralis_Contig1340:23113..26919- (Pylaiella littoralis U1_48)
GGGTCTCCCGCAAGAGGTTTAGGTCCACTACTACACAGCAACAGCACAAC
AACAGCGGCGTCTACCAAGGCCTATTCCAAAGGTGAGCGCTTATTGATAA
TACCGCAGATGCCACCACCCCCCACTACCTGGCCACCGGCTGGACCTTTG
AAAGGTAGACGGGCCTAACCAGAGGCGAAGGGTAGGCGTCCTCGGTGAAA
TCAGACCCCCGTGGGTAATATACTCTCTTCATTACCGCAGAAAAAACAAT
GCGGGAAAATATTCAAATATACTGTAGTCTACAGCCGGAGGTCTGGCATA
CACCGTTCTCTACGGTCAGCCATTCTTTCACCTACCCCGTATCCTTCTCG
ACGGCCCGATAGCAGAGTTTGGGTGGGAAATGGCTACACAAAGGCCGTTC
TTCAGGCGCGTGTGGTTCAACCACCAATTTGAAGAGGAGACTCGACGAAT
GTTCCCACGGTGGCAATTGCACCCGGGGTGATTGAATGTCCGTAACCTAA
CCCCGCAGACTCCTACTTGTATGATATGCGCGCAAATCCGGCATCAATTT
TTGCCACTTCCACCGGAAAAGCACCCTCAAAATTAACGCAACAGGGGGCC
CATCAGAGTACGTCGTAGAAAAGAGTTGTGGACGAAACGAAACGGGACAG
AGATGTGGTTGGCCCGTTCTCGCAACATGCATGATGTCCGTATCTTTGTC
CACACATTTTTCGCCCCCTCTGAAATCAAGATGAAAAAGCGAGATCGAAC
GGCGCTCAAAAACGATATTCTGTCATCATTTCCACCAACGTTGGGTCTTC
GGTCGAGATCACGCCTCAGGCAGGTGGTATGCTTTGTGGCCATACTATAC
GACCTGCGACATTGCAGACCAAGGAGCTCATCTGTGCGGGCCAACACCCA
CGTCGCCGGTACATGGTGTCTTCCACTGAGATCATGCCTCAAGTAGAATT
GACTCACACAGGAAGATATTTATCAGAACTCAATGTGTCACTTTCTTTCT
TGGATTGAGGCGAGAACCGAACTTGTAGACTAGCTAGCGGACCGTCACGG
TGTGGATGGCATGACCGCTGTCAGCAGGTAATCTTTTGGTCACGTGGAAA
CCACAGGGCCAATCTTCGCACAGTCGATTGATTTCCGGCCATTTTCGGGT
ACGTGTAAGAGGGTGGTGAATTCGAGTACCTCCAAAAAGTCGAGTAGCTT
GAATCGGGTATACCCGGCGGGCAAGTGGCCGCCACCGGGTGGCCGCTTGC
CGTGGCCAATCAGGTGGCGAGCCCAGGGGGCATTTTCGTTACAGAACAAA
AAACAAACCAAACATAGCCGCGAACCCATCGGGTGTACGAGTACCCGGTT
TTGAACAATCGCCTTTCGAAATATCACTGACGCAATGGACATGCGCAGCG
GTCAAGAACGTCTCGGTGCTTCAGGCACCAATGGCGAATCTTTACAGCAA
ACACAAACCCGGATCATAATATAGAACGCTTTCGGGTTATATGTGGTTCA
CCCAGTGTCGGTTCCAGTGATGTGCTTTGATTCCACACACACACCCCAAA
TAAAAAACGAGAAGCTGGCATAAATTTGATTTACCCCCGGGGAGATTATT
TCAGCTGAACAATAAACATTGATTCCCCCCGCTTTCTAGATCACGGCGTC
ATTCAGTGTAATAAGGTGTGAAATACCTCGATTTTGTGTCAACTACCATT
TTCTCGACTCTTCCAGCATCACAACACACTTAGGCCCAATACATCAAGCA
AATGTACTTACGGTATTCGGGATGGAACACGCCACTGTGTTCGGCACTAC
GAATATCTCATGCACGGTGTATTGAAAGTAATGAGCAACGAAGTGGACGT
AACCCGTTCGTTATTGCTGGGGGTGTTGATTGTGTCGTATTGCGCCAAGT
CACATCCGGCTCTGAAAACTTTGTGAGCTCTCCGTCCTGGATCTCCCAGT
TGCTCGCAAGTTTTTTGTCGCCCATTGCTTTCAATACACCTTTGCCGCCC
CACGCCTCCCGACTACTGCTGTACCTCCCCATGTTTGCACACAAGCCGGC
TGTGACGAAGCACTTCTAGCTTTTGGCGGGCACTGCTGTCTGGGAGGCGG
AGCCACCTTTGTTTTGTTTGGGGGAGGTCAGCTTCACTAGCAGTGACCAA
GCACCCCCCCGTGCTGTCCCCCTCTCTTTTCCTGTTGAACGCTTGCTCGC
GGGTCTTGTCCATCGCGAAAGAGCCACGTGCGTGTGTGTGAGAGGTGTTA
TAGTTGTCCTTCCCCCAACCCTCCCTGCCCCCCGCGGCAAGGTAAAGTTA
AACTTCCCCCGGGGTAAGGCTGTTTCCTACGGTTCACCGGGCTTTCGGTT
TTGATTTCAGACCCCCTGCCCCAACTCAACCAAGGACCCCCCGTCGAAAC
GACCCTGTTGACCACAACAGGAGACAGCACCAACCAGTGCTCGGCTCCTG
GGACACCAACTGCAATCAGACCTGTCGGAGCGTGCGCTCCAGTGTACTGT
AGTTGGTCACAGCAGTTTTGGTGGGTGCTGGCTTTGGCTGTGCCGAGATA
TTGCCGGCGGTGTGTGTTGAGGCGGAAAAACATCCGGTGAAACAGAAATA
GATCGTCCGAGCCTGATTTTCTGGCAGAAAATCAGGCTTGGACGACCTAT
TTGTTTTGCTGAATTTTCCTACATTAAACCACACCGCCGCCAGAATCTCG
CCACAGCCAACGCCCACACCCACCAAACTTGCTGTAGCCAACCTCTGAAC
ACTGGAGCGCACGCTCCAGCAGATTTGATAGCGATCGGTGTCCCAGGACA
GAGTACTGGTTGGTGCTGTGTCCTGTTGTGCTCAAAAAGCCGCCTTTTCA
ACGCTTTGGGCTCTCTGAATTTCGGGGAAGGGGGGGGTACCAAGCGGAAA
AAATCACCCTGAAAAATAGCAAGCCGTGAGAAACGGTCAAATAATGTAAA
AAAAAACAGTCCCCCCTCTTTCGTTGATTCACCCCGGGGGGAATACTGTT
TCAAAACACTCATGTCCCACCCTCGAGGAGAAATAGCACAGCAGTACGGT
ATTAGGTGGGAAAGGTTTGAAAAAAAACGCGAAGTTAACACCTCAAAGTA
ACAGCAGGGTTATTCTGCATGAAATGGCAGATTGCATCAGAAGTGCACCG
GAGGTGACAAAACACTCCGAGGCGGCATATATCTGAACGAAGGACACATA
ACCCTCACTCGGCTTCACCAAATGCCTGTCATACGTGGATGTCACGCTCA
CCCAATTCTCCTCTAGGTTGCATGCAAGAGCGCTCGCCCGCTGAGCAAGG
TCCGCCTTCACAGAGCTTCCAATGCGCCACCCGTAGCCGAGAATGCCATG
CTCCTAGACGGGCTGCAATCCAATCCAAGCTGCCGGCTGCCATTGAATGT
CTCCGCGCTAGCAAGATGTCGACGAGTCTGCGGCAAGATAAAGTATGGCC
GGGGGGCACACCAAAATGGCAGGGGAGTGGAAGCAGCCAGGATTGACTCC
CTGCCGTTGGAATACACAACAAGGGCAAGTAAACGATGAGTGCCAAGGTG
CACAATCTCAGGAGTATATGGCTTCGACTAAACGCCTCGCCACAGAAGTA
GGAGACACAAGTGCGGCCATCAATCTTCGGGTGGTTCCAAAGAGAAGTAT
GGTTGATTCGGTGTCTTATCATAGCAGCATGGTCGTCAAAGTGCTCCTTA
CTGCGTGTGGGCATAACGGATGCGCAGGACGAGATGACATAGACCAAATC
CTAAAAATTGTTGTTTTGGAGAGTTCTGCCCAAGAAGCGAACCGACTGCA
CGAAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1340:23113..26919-

>mRNA_P-littoralis_Contig1340.5.1 ID=mRNA_P-littoralis_Contig1340.5.1|Name=mRNA_P-littoralis_Contig1340.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig1340:23113..26919- (Pylaiella littoralis U1_48)
ATGGCCGGGGGGCACACCAAAATGGCAGGGGAGTGGAAGCAGCCAGGATT
GACTCCCTGGCAAGTAAACGATGAGTGCCAAGGTGCACAATCTCAGGAGT
ATATGGCTTCGACTAAACGCCTCGCCACAGAAGTAGGAGACACAAGTGCG
GCCATCAATCTTCGGGTGGTTCCAAAGAGAAGTATGGTTGATTCGGTGTC
TTATCATAGCAGCATGGTCGTCAAAGTGCTCCTTACTGCGTGTGGGCATA
ACGGATGCGCAGGACGAGATGACATAGACCAAATCCTAAAAATTGTTGTT
TTGGAGAGTTCTGCCCAAGAAGCGAACCGACTGCACGAAGAG
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