mRNA_P-littoralis_Contig1340.3.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1340.3.2
Unique NamemRNA_P-littoralis_Contig1340.3.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1340.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1340contigP-littoralis_Contig1340:23461..27342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size290
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789618.604919-CDS-P-littoralis_Contig1340:23461..236531680789618.604919-CDS-P-littoralis_Contig1340:23461..23653Pylaiella littoralis U1_48CDSP-littoralis_Contig1340 23462..23653 -
1680789618.6171834-CDS-P-littoralis_Contig1340:27246..273421680789618.6171834-CDS-P-littoralis_Contig1340:27246..27342Pylaiella littoralis U1_48CDSP-littoralis_Contig1340 27247..27342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1340.3.2prot_P-littoralis_Contig1340.3.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1340 23462..27342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1340.3.2

>prot_P-littoralis_Contig1340.3.2 ID=prot_P-littoralis_Contig1340.3.2|Name=mRNA_P-littoralis_Contig1340.3.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
GGVPAVCDGEAGLILDVTYSTNSMHSSTPERQVACKSARPLSKVRLHRAS
NAPPVAENAMLLDGLQSNPSCRLPLNVSALARCRRVCGKIKYGRGA
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mRNA from alignment at P-littoralis_Contig1340:23461..27342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1340.3.2 ID=mRNA_P-littoralis_Contig1340.3.2|Name=mRNA_P-littoralis_Contig1340.3.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3882bp|location=Sequence derived from alignment at P-littoralis_Contig1340:23461..27342- (Pylaiella littoralis U1_48)
GGCGGCGTACCTGCCGTGTGCGACGGAGAGGCAGGGCTTATCTTGGACGT
GACTTACAGTACAAATAGTATGCACAGCAGTACGCCGGAGCGACAGGTGA
ACACATGATGACACGGCTGCTGCTACAGCAGAAGATGATGCTGGACAGAC
CGCTGTAGAATGATGAGCTCACTACACGATAGATACCAATGCATGTGGGC
TCAACCCGTCGACGACGAAGGAGGGAAGAAAAGTTGTCTTTGACCACACG
CAGGGAATCAGGCAATCAGGCAGGCAGGCAGGCAGGCAGGCAGGTGGCAG
CTGCAGTGCGTATCGTCACATAGAGGTACTGCTGCCGTGCTGTACAAGCG
ACACATGTCTCGTATGCATATCTGCCAGCAAACATACCCCACCTGCGAAA
GTTGTCGTCACAAGCGTGATGGTGGGTCTCCCGCAAGAGGTTTAGGTCCA
CTACTACACAGCAACAGCACAACAACAGCGGCGTCTACCAAGGCCTATTC
CAAAGGTGAGCGCTTATTGATAATACCGCAGATGCCACCACCCCCCACTA
CCTGGCCACCGGCTGGACCTTTGAAAGGTAGACGGGCCTAACCAGAGGCG
AAGGGTAGGCGTCCTCGGTGAAATCAGACCCCCGTGGGTAATATACTCTC
TTCATTACCGCAGAAAAAACAATGCGGGAAAATATTCAAATATACTGTAG
TCTACAGCCGGAGGTCTGGCATACACCGTTCTCTACGGTCAGCCATTCTT
TCACCTACCCCGTATCCTTCTCGACGGCCCGATAGCAGAGTTTGGGTGGG
AAATGGCTACACAAAGGCCGTTCTTCAGGCGCGTGTGGTTCAACCACCAA
TTTGAAGAGGAGACTCGACGAATGTTCCCACGGTGGCAATTGCACCCGGG
GTGATTGAATGTCCGTAACCTAACCCCGCAGACTCCTACTTGTATGATAT
GCGCGCAAATCCGGCATCAATTTTTGCCACTTCCACCGGAAAAGCACCCT
CAAAATTAACGCAACAGGGGGCCCATCAGAGTACGTCGTAGAAAAGAGTT
GTGGACGAAACGAAACGGGACAGAGATGTGGTTGGCCCGTTCTCGCAACA
TGCATGATGTCCGTATCTTTGTCCACACATTTTTCGCCCCCTCTGAAATC
AAGATGAAAAAGCGAGATCGAACGGCGCTCAAAAACGATATTCTGTCATC
ATTTCCACCAACGTTGGGTCTTCGGTCGAGATCACGCCTCAGGCAGGTGG
TATGCTTTGTGGCCATACTATACGACCTGCGACATTGCAGACCAAGGAGC
TCATCTGTGCGGGCCAACACCCACGTCGCCGGTACATGGTGTCTTCCACT
GAGATCATGCCTCAAGTAGAATTGACTCACACAGGAAGATATTTATCAGA
ACTCAATGTGTCACTTTCTTTCTTGGATTGAGGCGAGAACCGAACTTGTA
GACTAGCTAGCGGACCGTCACGGTGTGGATGGCATGACCGCTGTCAGCAG
GTAATCTTTTGGTCACGTGGAAACCACAGGGCCAATCTTCGCACAGTCGA
TTGATTTCCGGCCATTTTCGGGTACGTGTAAGAGGGTGGTGAATTCGAGT
ACCTCCAAAAAGTCGAGTAGCTTGAATCGGGTATACCCGGCGGGCAAGTG
GCCGCCACCGGGTGGCCGCTTGCCGTGGCCAATCAGGTGGCGAGCCCAGG
GGGCATTTTCGTTACAGAACAAAAAACAAACCAAACATAGCCGCGAACCC
ATCGGGTGTACGAGTACCCGGTTTTGAACAATCGCCTTTCGAAATATCAC
TGACGCAATGGACATGCGCAGCGGTCAAGAACGTCTCGGTGCTTCAGGCA
CCAATGGCGAATCTTTACAGCAAACACAAACCCGGATCATAATATAGAAC
GCTTTCGGGTTATATGTGGTTCACCCAGTGTCGGTTCCAGTGATGTGCTT
TGATTCCACACACACACCCCAAATAAAAAACGAGAAGCTGGCATAAATTT
GATTTACCCCCGGGGAGATTATTTCAGCTGAACAATAAACATTGATTCCC
CCCGCTTTCTAGATCACGGCGTCATTCAGTGTAATAAGGTGTGAAATACC
TCGATTTTGTGTCAACTACCATTTTCTCGACTCTTCCAGCATCACAACAC
ACTTAGGCCCAATACATCAAGCAAATGTACTTACGGTATTCGGGATGGAA
CACGCCACTGTGTTCGGCACTACGAATATCTCATGCACGGTGTATTGAAA
GTAATGAGCAACGAAGTGGACGTAACCCGTTCGTTATTGCTGGGGGTGTT
GATTGTGTCGTATTGCGCCAAGTCACATCCGGCTCTGAAAACTTTGTGAG
CTCTCCGTCCTGGATCTCCCAGTTGCTCGCAAGTTTTTTGTCGCCCATTG
CTTTCAATACACCTTTGCCGCCCCACGCCTCCCGACTACTGCTGTACCTC
CCCATGTTTGCACACAAGCCGGCTGTGACGAAGCACTTCTAGCTTTTGGC
GGGCACTGCTGTCTGGGAGGCGGAGCCACCTTTGTTTTGTTTGGGGGAGG
TCAGCTTCACTAGCAGTGACCAAGCACCCCCCCGTGCTGTCCCCCTCTCT
TTTCCTGTTGAACGCTTGCTCGCGGGTCTTGTCCATCGCGAAAGAGCCAC
GTGCGTGTGTGTGAGAGGTGTTATAGTTGTCCTTCCCCCAACCCTCCCTG
CCCCCCGCGGCAAGGTAAAGTTAAACTTCCCCCGGGGTAAGGCTGTTTCC
TACGGTTCACCGGGCTTTCGGTTTTGATTTCAGACCCCCTGCCCCAACTC
AACCAAGGACCCCCCGTCGAAACGACCCTGTTGACCACAACAGGAGACAG
CACCAACCAGTGCTCGGCTCCTGGGACACCAACTGCAATCAGACCTGTCG
GAGCGTGCGCTCCAGTGTACTGTAGTTGGTCACAGCAGTTTTGGTGGGTG
CTGGCTTTGGCTGTGCCGAGATATTGCCGGCGGTGTGTGTTGAGGCGGAA
AAACATCCGGTGAAACAGAAATAGATCGTCCGAGCCTGATTTTCTGGCAG
AAAATCAGGCTTGGACGACCTATTTGTTTTGCTGAATTTTCCTACATTAA
ACCACACCGCCGCCAGAATCTCGCCACAGCCAACGCCCACACCCACCAAA
CTTGCTGTAGCCAACCTCTGAACACTGGAGCGCACGCTCCAGCAGATTTG
ATAGCGATCGGTGTCCCAGGACAGAGTACTGGTTGGTGCTGTGTCCTGTT
GTGCTCAAAAAGCCGCCTTTTCAACGCTTTGGGCTCTCTGAATTTCGGGG
AAGGGGGGGGTACCAAGCGGAAAAAATCACCCTGAAAAATAGCAAGCCGT
GAGAAACGGTCAAATAATGTAAAAAAAAACAGTCCCCCCTCTTTCGTTGA
TTCACCCCGGGGGGAATACTGTTTCAAAACACTCATGTCCCACCCTCGAG
GAGAAATAGCACAGCAGTACGGTATTAGGTGGGAAAGGTTTGAAAAAAAA
CGCGAAGTTAACACCTCAAAGTAACAGCAGGGTTATTCTGCATGAAATGG
CAGATTGCATCAGAAGTGCACCGGAGGTGACAAAACACTCCGAGGCGGCA
TATATCTGAACGAAGGACACATAACCCTCACTCGGCTTCACCAAATGCCT
GTCATACGTGGATGTCACGCTCACCCAATTCTCCTCTAGGTTGCATGCAA
GAGCGCTCGCCCGCTGAGCAAGGTCCGCCTTCACAGAGCTTCCAATGCGC
CACCCGTAGCCGAGAATGCCATGCTCCTAGACGGGCTGCAATCCAATCCA
AGCTGCCGGCTGCCATTGAATGTCTCCGCGCTAGCAAGATGTCGACGAGT
CTGCGGCAAGATAAAGTATGGCCGGGGGGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1340:23461..27342-

>mRNA_P-littoralis_Contig1340.3.2 ID=mRNA_P-littoralis_Contig1340.3.2|Name=mRNA_P-littoralis_Contig1340.3.2|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig1340:23461..27342- (Pylaiella littoralis U1_48)
GGCGGCGTACCTGCCGTGTGCGACGGAGAGGCAGGGCTTATCTTGGACGT
GACTTACAGTACAAATAGTATGCACAGCAGTACGCCGGAGCGACAGGTTG
CATGCAAGAGCGCTCGCCCGCTGAGCAAGGTCCGCCTTCACAGAGCTTCC
AATGCGCCACCCGTAGCCGAGAATGCCATGCTCCTAGACGGGCTGCAATC
CAATCCAAGCTGCCGGCTGCCATTGAATGTCTCCGCGCTAGCAAGATGTC
GACGAGTCTGCGGCAAGATAAAGTATGGCCGGGGGGCA
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