mRNA_P-littoralis_Contig134.100.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig134.100.1
Unique NamemRNA_P-littoralis_Contig134.100.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig134.100.1 vs. uniprot
Match: A0A6H5JVZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ9_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.230e-16
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 RVLAVATGSTVGTAPTLPAFSGHLCSPAIGENDVRRAALEVLVLAYAKKKEESIAAGLLP 180
            RVLAVATGST G AP  PAFS HLC P +G+ND+R AAL+ LVL YA+ KEE IA+GL P
Sbjct:  297 RVLAVATGSTTGKAPEFPAFSRHLCEPEVGQNDLRPAALDDLVLTYARAKEEFIASGLQP 356
[Close]
BLAST of mRNA_P-littoralis_Contig134.100.1 vs. uniprot
Match: D7G349_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G349_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.650e-15
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 RVLAVATGSTVGTAPTLPAFSGHLCSPAIGENDVRRAALEVLVLAYAKKKEESIAAGLLP 180
            RVLAVATGST   AP LPAFS HLC P  G+ND+R AAL+ LVLAYA+ KE+ IA GL P
Sbjct:  206 RVLAVATGSTTAKAPELPAFSQHLCEPVAGQNDLRPAALDHLVLAYARAKEKFIAIGLQP 265
[Close]
BLAST of mRNA_P-littoralis_Contig134.100.1 vs. uniprot
Match: A0A6H5K1E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E3_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 9.670e-15
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 RVLAVATGSTVGTAPTLPAFSGHLCSPAIGENDVRRAALEVLVLAYAKKKEESIAAGLLP 180
            RVLA ATGST G AP  PAFS HLC P +G+ND+R AAL+ LVL YA+ KEE IA+G  P
Sbjct:  634 RVLAAATGSTTGKAPRFPAFSRHLCEPEVGQNDLRPAALDDLVLTYARAKEEFIASGRQP 693
[Close]
BLAST of mRNA_P-littoralis_Contig134.100.1 vs. uniprot
Match: A0A6H5KWH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH1_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.940e-12
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 RVLAVATGSTVGTAPTLPAFSGHLCSPAIGENDVRRAALEVLVLAYAK 144
            RVLAVATGST G AP LPAFS HLC P +G+ND+R AAL+ LVL YA+
Sbjct:  151 RVLAVATGSTTGKAPELPAFSRHLCKPEVGQNDLRSAALDDLVLIYAR 198
[Close]
BLAST of mRNA_P-littoralis_Contig134.100.1 vs. uniprot
Match: A0A6H5KAC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.430e-11
Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 RVLAVATGSTVGTAPTLPAFSGHLCSPAIGENDVRRAALEVLVLAYAK 144
            RVLAVATGST G AP LPAFS HLC P  G+NDVR  AL+ LVL YA+
Sbjct:  194 RVLAVATGSTTGKAPELPAFSQHLCEPVAGQNDVRPDALDDLVLTYAQ 241
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig134.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JVZ9_9PHAE4.230e-1668.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G349_ECTSI3.650e-1568.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1E3_9PHAE9.670e-1565.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWH1_9PHAE2.940e-1270.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAC5_9PHAE1.430e-1170.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig134contigP-littoralis_Contig134:469043..469893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size185
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789618.3088145-CDS-P-littoralis_Contig134:469042..4691861680789618.3088145-CDS-P-littoralis_Contig134:469042..469186Pylaiella littoralis U1_48CDSP-littoralis_Contig134 469043..469186 +
1680789618.319738-CDS-P-littoralis_Contig134:469853..4698921680789618.319738-CDS-P-littoralis_Contig134:469853..469892Pylaiella littoralis U1_48CDSP-littoralis_Contig134 469854..469892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig134.100.1prot_P-littoralis_Contig134.100.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig134 469043..469892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig134.100.1

>prot_P-littoralis_Contig134.100.1 ID=prot_P-littoralis_Contig134.100.1|Name=mRNA_P-littoralis_Contig134.100.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
RVLAVATGSTVGTAPTLPAFSGHLCSPAIGENDVRRAALEVLVLAYAKKK
EESIAAGLLPV
back to top

mRNA from alignment at P-littoralis_Contig134:469043..469893+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig134.100.1 ID=mRNA_P-littoralis_Contig134.100.1|Name=mRNA_P-littoralis_Contig134.100.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=851bp|location=Sequence derived from alignment at P-littoralis_Contig134:469043..469893+ (Pylaiella littoralis U1_48)
CGGGTGCTCGCGGTGGCGACCGGGTCCACTGTGGGCACTGCTCCCACACT
TCCTGCCTTCTCTGGACACCTTTGTTCACCCGCCATCGGGGAAAATGATG
TCCGACGTGCGGCTCTGGAAGTTCTGGTTTTGGCCTACGCCAAGGTGGGT
GGGGCGTTGCTTCTCTCGTTTTGTATTTTTCATTCGAGATTTGTTATGTT
TTCTGGTGTCATTGCTTGTTGCGGGTGTTGTTGTGTTTTGTTTCCTTCAT
TATGTCTCCGTCGTCAGTTTATCTTATCTCTTCTGCCTTTCTGTTTGTGT
TCTCCGTACTTGGGGTCTTGTCCCCGTCGTAGCCAGTTCACCTTCTTTCG
TCCGAACCCTGTCCTCGGTTTTATTATGCAGACCAAAATGTGACATCTGC
TTTATTGACGTGGGAGCATATTTCCCAAAGAGTTCGCAAGAGGTTTCACA
CACGGGGGGTAGGGTGGGTCCAAGTCGAGCATTCTTCCGAAGTAGCATCG
GTAAAATCTTCCCGCGAGGTTTAGGTCCGACTTGTTTAAGTCTCCTACCA
TTTGATGCAACTCGATGACAAGCGTTTCAAAATACATTTTGACCCCCCCC
CGGGATAGAACAATAGATGACTTCGTTTGTTAACTTGTTTTTGGGAAACC
GTACCCCCTCAATACCCCCCCTCTCGGTACAGCGCCCCCGGTGTGCCGTT
CTACTTTCTCTTGCCGTCTTGCGAAAGTACTTACACTTCTTTTGGTCCAT
TGGCTCTTTGGCGCTCCTAATCTTCTACATCCCTAACCCGTTGCCCCTCG
CTCGCTGACAGAAAAAGGAGGAATCCATTGCTGCAGGCCTTCTACCGGTC
A
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig134:469043..469893+

>mRNA_P-littoralis_Contig134.100.1 ID=mRNA_P-littoralis_Contig134.100.1|Name=mRNA_P-littoralis_Contig134.100.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig134:469043..469893+ (Pylaiella littoralis U1_48)
CGGGTGCTCGCGGTGGCGACCGGGTCCACTGTGGGCACTGCTCCCACACT
TCCTGCCTTCTCTGGACACCTTTGTTCACCCGCCATCGGGGAAAATGATG
TCCGACGTGCGGCTCTGGAAGTTCTGGTTTTGGCCTACGCCAAGAAAAAG
GAGGAATCCATTGCTGCAGGCCTTCTACCGGTC
back to top