mRNA_P-littoralis_Contig134.98.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig134.98.1
Unique NamemRNA_P-littoralis_Contig134.98.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig134.98.1 vs. uniprot
Match: A0A6H5K5D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.880e-9
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 2 
Query:  230 LNNIFAMSYVPTPLSLQGPDLVEIVLKIKGCVSCGVEAVTGDDW 361
            L N++  + VP      GPDLVE VLKIKGCV CGVEAVTGDDW
Sbjct:   47 LKNVWVTALVP------GPDLVEAVLKIKGCVDCGVEAVTGDDW 84
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BLAST of mRNA_P-littoralis_Contig134.98.1 vs. uniprot
Match: A0A6H5KKU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU6_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.870e-6
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 2 
Query:  281 GPDLVEIVLKIKGCVSCGVEAVTGDDW 361
            GP+L E+V+KIKGCV CGVEAVTGDDW
Sbjct:  108 GPNLQEVVIKIKGCVDCGVEAVTGDDW 134
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BLAST of mRNA_P-littoralis_Contig134.98.1 vs. uniprot
Match: A0A6H5JRG8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.440e-6
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 2 
Query:  281 GPDLVEIVLKIKGCVSCGVEAVTGDDW 361
            GPDL E+V+KIKGC  CGVEAVTGDDW
Sbjct:  301 GPDLQEVVIKIKGCEGCGVEAVTGDDW 327
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BLAST of mRNA_P-littoralis_Contig134.98.1 vs. uniprot
Match: A0A6H5JSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ5_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.510e-6
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 2 
Query:  281 GPDLVEIVLKIKGCVSCGVEAVTGDDW 361
            GPDL E+V+KIKGC  CGVEAVTGDDW
Sbjct:  405 GPDLQEVVIKIKGCEGCGVEAVTGDDW 431
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BLAST of mRNA_P-littoralis_Contig134.98.1 vs. uniprot
Match: A0A6H5KK88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK88_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.550e-6
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 2 
Query:  281 GPDLVEIVLKIKGCVSCGVEAVTGDDW 361
            GPDL E+V+KIKGC  CGVEAVTGDDW
Sbjct:  607 GPDLQEVVIKIKGCEGCGVEAVTGDDW 633
[Close]
BLAST of mRNA_P-littoralis_Contig134.98.1 vs. uniprot
Match: A0A6H5JJM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.560e-6
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 2 
Query:  281 GPDLVEIVLKIKGCVSCGVEAVTGDDW 361
            GPDL E+V+KIKGC  CGVEAVTGDDW
Sbjct:  565 GPDLQEVVIKIKGCEGCGVEAVTGDDW 591
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig134.98.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K5D0_9PHAE7.880e-965.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKU6_9PHAE1.870e-681.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRG8_9PHAE2.440e-681.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JSZ5_9PHAE2.510e-681.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK88_9PHAE2.550e-681.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJM9_9PHAE2.560e-681.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig134contigP-littoralis_Contig134:461411..461771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size362
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size114
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789618.2731674-UTR-P-littoralis_Contig134:461410..4616571680789618.2731674-UTR-P-littoralis_Contig134:461410..461657Pylaiella littoralis U1_48UTRP-littoralis_Contig134 461411..461657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789618.2821443-CDS-P-littoralis_Contig134:461657..4617711680789618.2821443-CDS-P-littoralis_Contig134:461657..461771Pylaiella littoralis U1_48CDSP-littoralis_Contig134 461658..461771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig134.98.1prot_P-littoralis_Contig134.98.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig134 461658..461771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig134.98.1

>prot_P-littoralis_Contig134.98.1 ID=prot_P-littoralis_Contig134.98.1|Name=mRNA_P-littoralis_Contig134.98.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=38bp
MSYVPTPLSLQGPDLVEIVLKIKGCVSCGVEAVTGDDW
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mRNA from alignment at P-littoralis_Contig134:461411..461771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig134.98.1 ID=mRNA_P-littoralis_Contig134.98.1|Name=mRNA_P-littoralis_Contig134.98.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=361bp|location=Sequence derived from alignment at P-littoralis_Contig134:461411..461771+ (Pylaiella littoralis U1_48)
ATTGGGCAACATTGATATATATCTGCTTGTTAGGGCGGAAAGTGCCTAGA
GGAGACGATTGGGACTGGCGGTAAACCCTGTAACCTGCAAAAACGTAGCA
TTTTATATACTGGAAACTGGTGCTCAGACCTTCGGGCGGGGTATGTGCAT
TGCGTATTCTTGGGCATGCTGCTGGGCATTGTCTTGTGAGAAAAATGCCA
GGACATGAATTCGTTACGAGCCAACTTGCTTGAACAATATTTTCGCGATG
TCTTACGTTCCCACTCCTCTATCTCTTCAGGGGCCTGACCTCGTGGAAAT
CGTGCTGAAGATCAAGGGCTGTGTCAGCTGTGGCGTGGAAGCTGTGACGG
GTGATGACTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig134:461411..461771+

>mRNA_P-littoralis_Contig134.98.1 ID=mRNA_P-littoralis_Contig134.98.1|Name=mRNA_P-littoralis_Contig134.98.1|organism=Pylaiella littoralis U1_48|type=CDS|length=114bp|location=Sequence derived from alignment at P-littoralis_Contig134:461411..461771+ (Pylaiella littoralis U1_48)
ATGTCTTACGTTCCCACTCCTCTATCTCTTCAGGGGCCTGACCTCGTGGA
AATCGTGCTGAAGATCAAGGGCTGTGTCAGCTGTGGCGTGGAAGCTGTGA
CGGGTGATGACTGG
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