mRNA_P-littoralis_Contig134.76.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig134.76.1
Unique NamemRNA_P-littoralis_Contig134.76.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig134.76.1 vs. uniprot
Match: A0A6H5L1L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1L5_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 6.210e-89
Identity = 154/184 (83.70%), Postives = 166/184 (90.22%), Query Frame = 1 
Query:  493 TPLSAEETAAVFSEQPTGDVPSASEMEDRKDATSSSDNLLPTDKLQNGLKNAKMIFATGWASVAATYRDLERTETAEKMKEGAVALMDRSMDGLSKVGCKISETTEKGVQVVGSKMEEAAPTLGRWRDEVYIASERGYAAAKDMTDKAIAEIKKPGGSNGGVPP--NDSGDTGADDPDGGAHTV 1038
            TPL+AEETA VF+EQPTG+VPSA EMEDRKDATSSSDNLLPTDKL+NGL++AKMIFATGWASVAATYRDLERTETAEK+KEG V L+DRSMDGLSKVGCKISETTEKGVQVVG+KMEEAAPTLGRWRDEV IASERG+AAAKDMTDKA+AEIKKPGGSNGG  P    SG+ G D P    HTV
Sbjct:   55 TPLTAEETADVFNEQPTGEVPSAEEMEDRKDATSSSDNLLPTDKLENGLRHAKMIFATGWASVAATYRDLERTETAEKIKEGTVNLVDRSMDGLSKVGCKISETTEKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFAAAKDMTDKAMAEIKKPGGSNGGSGPAAGRSGEGGDDGP----HTV 234
[Close]
BLAST of mRNA_P-littoralis_Contig134.76.1 vs. uniprot
Match: D7G658_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G658_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 2.100e-76
Identity = 133/159 (83.65%), Postives = 143/159 (89.94%), Query Frame = 1 
Query:  568 MEDRKDATSSSDNLLPTDKLQNGLKNAKMIFATGWASVAATYRDLERTETAEKMKEGAVALMDRSMDGLSKVGCKISETTEKGVQVVGSKMEEAAPTLGRWRDEVYIASERGYAAAKDMTDKAIAEIKKPGGSNGGVPP--NDSGDTGADDPDGGAHTV 1038
            MEDRKDATSSSDNLLPTDKL+NGL++AKMIFATGWASVAATYRDLERTETAEK+KEG V L+DRSMDGLSKVGCKISETTEKGVQVVG+KMEEAAPTLGRWRDEV IASERG+AAAKDMTDKA+AE+KKPGGSNGG  P    SG+ G D P    HTV
Sbjct:    1 MEDRKDATSSSDNLLPTDKLENGLRHAKMIFATGWASVAATYRDLERTETAEKIKEGTVNLVDRSMDGLSKVGCKISETTEKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFAAAKDMTDKAMAEMKKPGGSNGGAGPAAGGSGEGGDDGP----HTV 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig134.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1L5_9PHAE6.210e-8983.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G658_ECTSI2.100e-7683.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig134contigP-littoralis_Contig134:406592..410648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2210
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_005270.1
Cds size732
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig134.76.1prot_P-littoralis_Contig134.76.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig134 406901..409479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789618.034352-UTR-P-littoralis_Contig134:406591..4069001680789618.034352-UTR-P-littoralis_Contig134:406591..406900Pylaiella littoralis U1_48UTRP-littoralis_Contig134 406592..406900 +
1680789618.101127-UTR-P-littoralis_Contig134:409479..4106481680789618.101127-UTR-P-littoralis_Contig134:409479..410648Pylaiella littoralis U1_48UTRP-littoralis_Contig134 409480..410648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789618.047431-CDS-P-littoralis_Contig134:406900..4072361680789618.047431-CDS-P-littoralis_Contig134:406900..407236Pylaiella littoralis U1_48CDSP-littoralis_Contig134 406901..407236 +
1680789618.0586474-CDS-P-littoralis_Contig134:407619..4077541680789618.0586474-CDS-P-littoralis_Contig134:407619..407754Pylaiella littoralis U1_48CDSP-littoralis_Contig134 407620..407754 +
1680789618.0739222-CDS-P-littoralis_Contig134:408656..4087971680789618.0739222-CDS-P-littoralis_Contig134:408656..408797Pylaiella littoralis U1_48CDSP-littoralis_Contig134 408657..408797 +
1680789618.0854201-CDS-P-littoralis_Contig134:409359..4094791680789618.0854201-CDS-P-littoralis_Contig134:409359..409479Pylaiella littoralis U1_48CDSP-littoralis_Contig134 409360..409479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig134.76.1

>prot_P-littoralis_Contig134.76.1 ID=prot_P-littoralis_Contig134.76.1|Name=mRNA_P-littoralis_Contig134.76.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=244bp
MSGFETAALSDSNTGGSAGGSAASASSPASGGITVVGVSSAAEQAPAPGV
AVVGGDGGSDSTPLSAEETAAVFSEQPTGDVPSASEMEDRKDATSSSDNL
LPTDKLQNGLKNAKMIFATGWASVAATYRDLERTETAEKMKEGAVALMDR
SMDGLSKVGCKISETTEKGVQVVGSKMEEAAPTLGRWRDEVYIASERGYA
AAKDMTDKAIAEIKKPGGSNGGVPPNDSGDTGADDPDGGAHTV*
back to top

mRNA from alignment at P-littoralis_Contig134:406592..410648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig134.76.1 ID=mRNA_P-littoralis_Contig134.76.1|Name=mRNA_P-littoralis_Contig134.76.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4057bp|location=Sequence derived from alignment at P-littoralis_Contig134:406592..410648+ (Pylaiella littoralis U1_48)
ATTTATTCTTGTCATCTACCATTGGGATAGATCAGGATATAGGAAGGGGC
ACCGTGAAAACTAATTTCATATCCACGAATGGGTGTACGAGGGGTTCCGG
GGTGTACCATGCCATCTCTGAAAGTTGAAAACCTGTGTTATGTTGTTTTG
CCAGCTCTGTTTTGCAGCACCGCCTGTGACACGAAGCAGGACCTATAAAC
ACACACACACACCTTCTACCTGACTCGCTACAACAGCGGTGTTGCGCCAA
TTCTCAGCCGTGCTTTTGTTGTCTCGTTTTTACCCCTCAACGAATAACAA
CCTTCTGTAATGTCTGGCTTCGAGACTGCGGCACTCTCGGATAGCAATAC
CGGTGGCAGCGCAGGCGGTTCAGCTGCATCGGCATCATCTCCAGCAAGCG
GGGGAATCACCGTAGTCGGAGTTTCTTCAGCAGCAGAACAAGCGCCAGCA
CCAGGGGTGGCAGTGGTGGGTGGTGACGGCGGCAGCGACAGCACTCCGCT
CAGCGCAGAGGAGACTGCTGCGGTGTTCAGCGAGCAGCCGACGGGAGACG
TTCCCAGCGCCTCGGAAATGGAGGACAGGAAAGACGCAACTTCGAGCTCG
GACAATCTCCTTCCCACAGATAAACTGCAAAATGGTCTTAAGAACGTGAG
CGGGTCTCAATTAATTTGTGGAAGAGGCGTTTTTCGCAACAGGCCAACAA
CATTGCACCGCTGTACTGCATCGAAGAAGACGGAACATTGAAAATTGAAA
ATTGCAAGATTGTCTCTAGCTGTGCAACGGTTTTTCATCTGATTTTTGTT
GTACTTCGAAGCTGCTGTAGAAACACAAGTAGATGTACTTCGGAGTACGA
AGTACCTGGTACATGATTTTACTCTCTGAGCTCTGAGGAGATCCGCGTCT
ACAGAGAGACAACCATTGATCCTTTTGTCCAAAACACTTCGAACTCTGAT
CCCGGTGTAAAATTGCTTCTCCGGCACAAGGCTTTTATCATAATGTAGAC
GTTTTTTTTTGCGCTTTTTTTGCTACAGGCGAAGATGATATTCGCGACGG
GGTGGGCCAGCGTGGCGGCAACGTACCGCGACTTGGAGAGGACGGAGACG
GCCGAGAAGATGAAGGAGGGCGCGGTCGCCTTGATGGACAGAAGCATGGA
CGGTCTCAGCAAGGTGATTCGAAGCATGCATGTGATGCATCCCGCAGGAC
CTGACTGAGCAGTCTCTTTCTTGCCCTGAAAATATTATTGACGCTCTTGA
ATTAAGTTTACATGACACCTGTAGACAAATCGTTGCGCTCAACAACTCGA
TACGTGTGATATGTATGATTCAGCAAAAGGTGCCCAAGTACTTGTGCAAG
CAGGCAGAACGATAAAGTCTCTCTACCTTGACAAAATACTCGATGCTCTG
GAAGGCTTCTTACGTTGGCCATTGGGTACGTCGCGGAATAGCATTTTTGC
GCTCGAAGCTGAATGGATTCCGCCCACTACGCGTAAGTAGGATAGCCCAA
ACGCGGCACTGCTGCTGCACATGAAGACAACGTCGTGCGCGCTTTCCCTC
TCTATTTTATACCAGTATTCCAGAATACGTCGCCTGCTTCGACGGGCCGA
GTAACGTCTGCGCAGCTGCCACACTACTCGTCAACAGTTTGTGCCATTCT
TCGCTCACTAGCGCCACTGGCGTGCGCTACACAGCAGTGAACACGCAGGT
TTGCATTTGAAACTATCGACAACAACAACAACAACAACAACAACAACAAC
AACAACACCACCACCACCACCAACAACAACAACAACAACAACAACAGCAA
CGACAACAACAACAACAACAACAACGACAACAACAACAACAACAACAACG
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAAC
GACAACAACAACAACAACAACAACAACAACAACAACAACAAAAACATCGA
GGGCAACAAATTTCGGGTATATGTCATGTCACCGCTCGTCTTGTGTGCTG
TGCGTTGTTAACGCGCATGTGCCCACGTGTGCTTGCGCTTGCTTCGCACA
TGTGCATGGTGACAGGTTGGGTGTAAGATATCGGAGACGACCGAGAAGGG
GGTCCAAGTGGTGGGGTCCAAGATGGAGGAGGCTGCCCCTACCCTTGGCA
GGTGGCGAGACGAGGTGTACATTGCGAGCGAGAGGGGCTATGCCGCCGCC
AAAGACGTGAGTCACGACACATCCCAAGTATGGTATTGAGTACCCCCCCC
CCTCCCGGTGTTCCATGTCGAAAGGAAGGCGTGGTCGATGGCCGAAGTAT
TTACGGCGAGAAAAAACGAGTGCGGCATGCCGTATGCCCCTCCCCCCCCC
CCCGAGCATTTGCATCATGGATTTGCCTCCACGCGTAGTTGCACACTCCC
GCCACGACCAACAAAGTAACGGCTGTCGTTTTTCCCGTCCGTTCTTCGTC
ACAAGAAGCGGGGCGCCCAACAAGCCCAACAGATGCCACTGTACCTCCCT
TGCGCCCGCACCCGCACCCGCATTCGTCGATTGCCCCGACGGTGCTTTCT
ATGTGCGTTCTACCCCCCTCTCTCTACCATTTTCTTTGCTCTTCTGGTTG
GCCTGGAATGGGGGCGAATCTATATTTGCATCAAGATTTGGGGTAGAGAG
AGGGAAGGACAGAGAGGAGGAGACAAAAAGAGGAGATAGACAGACGGACA
TAACGACCCTCTTGTTTGCTCTCGCTTCCACTGCTGTTTTGTGTTAAAAA
AAATGGGTGGCCCCTCAGATGACGGACAAAGCGATAGCTGAAATCAAGAA
GCCGGGGGGAAGCAATGGTGGCGTGCCCCCCAACGACTCGGGGGACACTG
GGGCCGACGATCCCGACGGCGGGGCGCACACTGTTTGACTCCTGCGCCGA
ACAGGAGAAACCCTGTTCTTCCGTTACAAAAGGAGCTGTATCTGTACGTA
CGTGGCCCAGAATGTACCCTATAGTGGCATTTGTTTCTATGAAAGAATGC
TCACTCAAGCCCACCCCGATCAGTCCCTTGTCTGGGGAGTGAGTGAGTCA
TGATATACTTCTCGTGGTGAAGCGCTTTTTTTTTTCGTGGGTGCTTCCCT
CGCAGCAGCCTTACGCCGCCTGCCTTTTTCTGTGTGTGTATTATGAGGAT
TTCGTGAATTGTGTGTGTTCTGTCTCAACGGGATAGGGTGTCGTCTCTGG
TCTTGTTTGGACGTAATATGAAAGAATGACAGTTGAATTATACTCCGTAC
TAATTTTTCCTTGTTTCGTAGCAAGTATTACCGGTCTACATCCCCCTCCT
CTCTATCTTGATAAGTGCATTGGTGCGCAAGCTTTTGAATATTCTGGGTG
TTGCCCTTTTTTACCCTTGGCCACCCTTGTGCTTACCGAGAACTCCTGGC
GCTGACGCTCCTAAATACGTATCATTCGTACCCTCGTAAATAATTCGAAA
TACAAGGATTCGGCAGGTAGCAGTGATACTGAGGATGTTGAGCGGCAGCG
ACGCTCGGCTCCATTGTCAGCTAAATGCACGAGTTGTCTCTTGCTTTTTT
TACAGAGAAACTGCGTCGGTCATCCTGAGGAAGCATGCTAGAAATAAGCA
TGCTAGACGACTGGATGGATATTTTTATCTCAGTAAAGTAATAACGCTTA
CAGGTCACGTACGAAAAAATAATACGCGTTAGTTGTGGTAGATCCGGAGG
TGTTTGAGGGTGAGGTTTACAATCGTGAAGACCGTCTGCTGTGTTCACGA
GGGCTGTGTAGAGGCTGATATCTGGCCGGTGAATGGGGGAGTATATTTAG
CGCGCTGTCAAGGGTTTCCATTTATTCCCTGTGTTGTACGCCTGCTAGTT
TCTTTGCATTATTTCGCTCTCATGTTTCATGTCATAGTAGCAGTGTGCAC
AGGCGATCCACGGATGTTTGTCCAGGTCGTCTAAAGGGCAGCATCATAGG
GGGCGACGGAGTTTGTTTCTCCTTGAATCTCCCTCCCACGGGATGTCTCA
AGGTTTTCCCAACACGTGAAAAAAGTTCAGGTGCTCTCGTCCAGGAGATG
TGTCGAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig134:406592..410648+

>mRNA_P-littoralis_Contig134.76.1 ID=mRNA_P-littoralis_Contig134.76.1|Name=mRNA_P-littoralis_Contig134.76.1|organism=Pylaiella littoralis U1_48|type=CDS|length=732bp|location=Sequence derived from alignment at P-littoralis_Contig134:406592..410648+ (Pylaiella littoralis U1_48)
ATGTCTGGCTTCGAGACTGCGGCACTCTCGGATAGCAATACCGGTGGCAG
CGCAGGCGGTTCAGCTGCATCGGCATCATCTCCAGCAAGCGGGGGAATCA
CCGTAGTCGGAGTTTCTTCAGCAGCAGAACAAGCGCCAGCACCAGGGGTG
GCAGTGGTGGGTGGTGACGGCGGCAGCGACAGCACTCCGCTCAGCGCAGA
GGAGACTGCTGCGGTGTTCAGCGAGCAGCCGACGGGAGACGTTCCCAGCG
CCTCGGAAATGGAGGACAGGAAAGACGCAACTTCGAGCTCGGACAATCTC
CTTCCCACAGATAAACTGCAAAATGGTCTTAAGAACGCGAAGATGATATT
CGCGACGGGGTGGGCCAGCGTGGCGGCAACGTACCGCGACTTGGAGAGGA
CGGAGACGGCCGAGAAGATGAAGGAGGGCGCGGTCGCCTTGATGGACAGA
AGCATGGACGGTCTCAGCAAGGTTGGGTGTAAGATATCGGAGACGACCGA
GAAGGGGGTCCAAGTGGTGGGGTCCAAGATGGAGGAGGCTGCCCCTACCC
TTGGCAGGTGGCGAGACGAGGTGTACATTGCGAGCGAGAGGGGCTATGCC
GCCGCCAAAGACATGACGGACAAAGCGATAGCTGAAATCAAGAAGCCGGG
GGGAAGCAATGGTGGCGTGCCCCCCAACGACTCGGGGGACACTGGGGCCG
ACGATCCCGACGGCGGGGCGCACACTGTTTGA
back to top