mRNA_P-littoralis_Contig134.73.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig134.73.2
Unique NamemRNA_P-littoralis_Contig134.73.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig134.73.2 vs. uniprot
Match: D7G657_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G657_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 9.270e-62
Identity = 143/208 (68.75%), Postives = 164/208 (78.85%), Query Frame = 2 
Query:    2 AAREKQAVVNGARAAKERAAEEAAAAKEWSKGSNERGSKRESDAARKQDEKAAXXXXKKALEAEEAEQLAGFKSVVKTKKKVEIPPWEAALVSSSMSNKEKKKQXAAKREVQAEEARKLKAEKAAREAKAMRDSGIQMVDDGTDLTEGSANPNRKNGADGE--GQWASGIDAAIGSLSLKGGRGXXXXXXEEKHPEKRLKAVSARWAE 619
            AAREKQA V GARAAK          KEWSKG+N+RGSKRE +AARKQ+EK +    KKAL+AEEAEQL+GFKSVVKTKKKV++PPWEAAL+SSS+SNKEKK+Q AAKR+ QAEEARK KAE+A +EAKAMRDSGIQM DD ++L+ GSANPNRK GADG   G WASGIDAAIGSLSL+G          E+HPEKRLKA  A + E
Sbjct:   16 AAREKQAAVEGARAAKAXXXXXXXXXKEWSKGANQRGSKREDEAARKQEEKTSKLAAKKALQAEEAEQLSGFKSVVKTKKKVDVPPWEAALMSSSVSNKEKKRQEAAKRQAQAEEARKAKAERAEKEAKAMRDSGIQMGDD-SELS-GSANPNRK-GADGGDGGDWASGIDAAIGSLSLEGA------GPAERHPEKRLKAALAAYEE 214
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BLAST of mRNA_P-littoralis_Contig134.73.2 vs. uniprot
Match: A0A6H5L325_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L325_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 7.770e-58
Identity = 139/201 (69.15%), Postives = 158/201 (78.61%), Query Frame = 2 
Query:    2 AAREKQAVVNGARAAKERAAEEAAAAKEWSKGSNERGSKRESDAARKQDEKAAXXXXKKALEAEEAEQLAGFKSVVKTKKKVEIPPWEAALVSSSMSNKEKKKQXAAKREVQAEEARKLKAEKAAREAKAMRDSGIQMVDDGTDLTEGSANPNRKNGADGE--GQWASGIDAAIGSLSLKGGRGXXXXXXEEKHPEKRLKA 598
            AAREKQA V GARAAK         AKEWSKG+N+RGSKRE +AARKQ+EKA+    KKAL+AEEAEQL+GFKSVV     V++PPWEAAL+SSS+SNKEKK+Q AAKR+ QAEEARK KAE+A +EAKAMRDSGIQM DD +DL+ GSANPNRK GADG   G WASGIDAAIGSLSL+G          E+HPEKRLKA
Sbjct:   16 AAREKQAAVEGARAAKAXXXXXXXXAKEWSKGANQRGSKREDEAARKQEEKASKIAAKKALQAEEAEQLSGFKSVV-----VDVPPWEAALMSSSVSNKEKKRQEAAKRQAQAEEARKAKAERAEKEAKAMRDSGIQMGDD-SDLS-GSANPNRK-GADGGDGGDWASGIDAAIGSLSLEGA------GPAERHPEKRLKA 202
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig134.73.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G657_ECTSI9.270e-6268.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L325_9PHAE7.770e-5869.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig134contigP-littoralis_Contig134:401718..406371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G657
Preferred nameCCDC124
PFAMsCcdc124
Model size2078
Max annot lvl2759|Eukaryota
KEGG koko:K02357
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010556,GO:0010557,GO:0010604,GO:0016020,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032774,GO:0033554,GO:0034599,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0060255,GO:0065007,GO:0065008,GO:0070887,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0097659,GO:0098771,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2001141
Exons4
Evalue1.53e-26
EggNOG OGsKOG3223@1|root,KOG3223@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF1014
Ec32 orthologEc-11_005260.1
Descriptioncell division
Cds size525
COG categoryCH
BRITEko00000,ko03012,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig134.73.2prot_P-littoralis_Contig134.73.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig134 403003..404138 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789617.9320633-UTR-P-littoralis_Contig134:401717..4021241680789617.9320633-UTR-P-littoralis_Contig134:401717..402124Pylaiella littoralis U1_48UTRP-littoralis_Contig134 401718..402124 -
1680789617.9498177-UTR-P-littoralis_Contig134:402142..4030021680789617.9498177-UTR-P-littoralis_Contig134:402142..403002Pylaiella littoralis U1_48UTRP-littoralis_Contig134 402143..403002 -
1680789617.9791846-UTR-P-littoralis_Contig134:404138..4041951680789617.9791846-UTR-P-littoralis_Contig134:404138..404195Pylaiella littoralis U1_48UTRP-littoralis_Contig134 404139..404195 -
1680789617.997969-UTR-P-littoralis_Contig134:406142..4063711680789617.997969-UTR-P-littoralis_Contig134:406142..406371Pylaiella littoralis U1_48UTRP-littoralis_Contig134 406143..406371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789617.958984-CDS-P-littoralis_Contig134:403002..4034581680789617.958984-CDS-P-littoralis_Contig134:403002..403458Pylaiella littoralis U1_48CDSP-littoralis_Contig134 403003..403458 -
1680789617.9698503-CDS-P-littoralis_Contig134:404069..4041381680789617.9698503-CDS-P-littoralis_Contig134:404069..404138Pylaiella littoralis U1_48CDSP-littoralis_Contig134 404070..404138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig134.73.2

>prot_P-littoralis_Contig134.73.2 ID=prot_P-littoralis_Contig134.73.2|Name=mRNA_P-littoralis_Contig134.73.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp
MSNKEKKKQEAAKREVQAEEARKLKAEKAAREAKAMRDSGIQMVDDGTDL
TEGSANPNRKNGADGEGQWASGIDAAIGSLSLKGGRGGGGGGAEEKHPEK
RLKAVSARWAEGDRARTSTRGARGGSVGVSLLLVRTGTSSVHVMMCIRRR
CGGGKNKKTNNSLLRATFLPSWLS*
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mRNA from alignment at P-littoralis_Contig134:401718..406371-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig134.73.2 ID=mRNA_P-littoralis_Contig134.73.2|Name=mRNA_P-littoralis_Contig134.73.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4654bp|location=Sequence derived from alignment at P-littoralis_Contig134:401718..406371- (Pylaiella littoralis U1_48)
GGCCGCACGAGAGAAACAGGCGGTGGTAAATGGAGCGAGAGCGGCGAAAG
AACGAGCAGCCGAGGAAGCAGCAGCGGCGAAGGAATGGAGCAAAGGCTCC
AACGAGAGAGGCTCCAAGCGGGAGAGCGATGCCGCTCGGAAGCAAGACGA
GAAGGCGGCCAAGGCAGCGGCCAAGAAAGCACTGGAGGCGGAGGAGGCTG
AACAGCTGGCGGGGTTCAAGTCCGTGGTGGTGAGGGGCAGCAGTGGATGA
CGGAGCACTAAAGTCCTATAGATTTAGAAACACAACCACGCAAGACTGCT
GTTGAAGCACGTGGACATTCGGGAAAGTGAGTTGGTGCGCCAGGTGGGCT
TACAGAGTACTCGTGGTGAAGACAGCAGAGCAGCAGCAGCATCAGCAATG
AGAACGTCGCCTCATATGATATGATTGTAGCAACTGCAACGAGGAAGACC
TTGTAGTACTGAGCCAGTATTTATATGTACCACGTGCTGTTGACTAGAAA
CAGAAATTCAAATTGAATTTCCAACATACAAATTTACAAAGGGAGAGCAA
GCGGCTATGATAGCTATCCCAAGGACAGCCTGACTATCAAGATGTACAGC
AGACAGCGTTGTTGTTGTTGATTCTCACATTAGCTCACTACCGCCGCAGT
CTAGCCCGTGGTCACAAACCAGGCACATATCGTGCTAGGAGGAAAAATAA
AAAATAAAATAAATAGACTATGATCACCCACAGCAGTCAAATCAGATATG
GTACCGTTGGGGTACCATCTATGGTGGCCAAAGTACCAAACAAAATACAG
AAAAAACAAAATAACAGGTTCGAAAGAAAAAACAAAAATTGGAAACAGTC
CGACAAACAAAAAATAACCAAGACAAACCTCAACCATTACCATATACTGT
ACTTCGAAGTACTTCGTACATCGAACCAGGGCCCAGGGCCATGACAGACC
AAGGCAAAGGCAAACCAGGGCGATGGTCCAGTAACTATATGATCATTAGA
CGAAAGACAGAAAAATAAAAAGAAGATATAATATATATATATATATATTA
CAGGGAGGGCACAAAGACTGAGGGAGTGCACTCGTACACAAACACAACAA
ACAGGCCGCCAGTATCAGACCTTCGAGTATAATTTCACACCTGCCTCGAG
AGTCCGTTGGCAAGTTTAACTTTTCTACCACGCGCGACGAACAACAGGAG
TTATTCAGCAGTATTATACGTACGTATGAGAAGGTGGCCGTCACACATGT
AATCTGGAAGTTAGTCCGGGCCCTGCACACAAAAGAGCCCTTCATCTTCG
TCCATAGGTGGTGATACTATCGGATCCAACCTCCATACACAGCAGGGCAT
GATCGCAGGATTCATATTTCACGTCAAAAGATTAGTCTGTTCATATATGG
ACGCCGGCTGAAGCGTCCCACCAAAAGGGTGCCTGGTGCCCATGTTCCTT
GCACGTGACTGCTGTTGCGGCAGTAAATTAGCTCCATTATTCGCTCAATA
GACGAGAATTGATCAGCGACACCGACCCCCATGTTGTCACCGCGACTCAA
AAGTAGAGAAAGGCGGCGGGCAGTACATATGACACATGGCCGCCGTTCGA
GAGAACGTTCCGTGTGTGGCGACATTTCTTGCAACGGTACGTTGTCTGAT
GAGTCATATCATACTAAGTACATGCGTAGAAACACAGGTACTCGTAGATA
CTTCTTAACTTTATCCTTTGTTTTCGGTGCTAATATACCCCAGATCCTCG
TCTCGAAGAGAGACGGACACATCGATTTGTTTGTATGTAAGAAAAAAGGA
AATAAAAGGAGCCAACATGAAGAGATCGTGAGACAACATATTTCGAAAGT
ATAATATTACGAAGCACAGCACGTACTTAGTCAAACACTATCGTACCTGG
TACAGCGGTACCTGGCACCAGCAGGTAACCTCCGCGGATGGATGTGATGC
ACGGCATTGTGTCTGTCGGTCGTGGCCTATGATTCCCTCTCTCGGCAGAC
CTCGACCTGTTCCCTCATTTCCTTCTCCCTCTCCCTCTCCCTAGTCATAG
TAAATGCGTTGTCAGGTCGCCCAGCCGATTCTTTATTCTGATACTTCGAA
GTAGTTGAATTTGAGAATGGAAAAATCATCGAGTGCCTGCTCCCCCCGCG
CCCCTCCCTTCCCCACGCCCTTCTAGAAAACCAAGAAAAAGGTCGAAATC
CCACCGTGGGAGGCGGCTCTTGTTTCTTCCTCGATGAGCAACAAGGAGAA
GAAGAAGCAGGAGGCGGCGAAACGAGAGGTGCAGGCGGAGGAGGCTCGCA
AGGTGTGCGTTGTTCGCTTCTCTTACTGTACTCGTTTTCTTCTTCCTTTT
CCAACAGGCAGCTTTTCGTGGCGTCCCCGCTTTTGTGTTGTTATTCCCTC
CCTGTTGTCATGCCTCAGTTAAGTTTCCACCCCCACCCCCCTCCGACCCT
TCAAGGGCTATCATACCATACGGTACGCACACAAAACCCTATTGAAAAGA
ATCGGGATAAGAGAGTGCAACCAAAGGAAGCTTCGCACAGCAGCAGTGGC
AGCAGCAGCACACCGCGTGTGTGCACCTGATATCACTTGATACACCTACC
CCGTAGAGTAGAGCACTGAGCTGCGCCGAACTTGGCTCTTACGAGAAGTA
CCAAATGATGTATTGATATACCCCCGAACGATCCTCCGTATGATGCGATG
CTCCCGTCTAAAAACGACTGACGTGCAGCATTTCTGCTGGGAGCATGATG
CGTGGGTGTCTGGTATTGCATTTTTGCCATTGCTTCCCCCCCAGTCTGAC
CAATTTGTCGGCCGCCGTCCCTCCCCCCGCCCCCCCGTCTGGCCGATTCG
TCGATGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TTCCTCCCCACAGCTGAAGGCCGAAAAAGCCGCTAGAGAGGCCAAGGCGA
TGCGAGACTCGGGCATCCAGATGGTGGACGACGGTACCGACCTGACCGAG
GGCAGCGCCAACCCCAACAGAAAAAACGGGGCCGACGGGGAGGGGCAGTG
GGCCAGCGGCATCGACGCCGCGATCGGAAGCCTGAGTCTCAAGGGCGGCC
GCGGTGGTGGGGGCGGTGGCGCCGAGGAGAAGCATCCGGAGAAACGGCTC
AAGGCGGTGAGTGCGCGATGGGCGGAAGGTGATCGGGCCAGAACAAGCAC
GCGGGGGGCGCGCGGGGGGAGCGTTGGTGTTTCGTTGCTGCTTGTTCGTA
CCGGTACTAGTAGTGTGCATGTTATGATGTGTATCCGCAGAAGGTGTGGT
GGAGGGAAAAACAAAAAAACAAATAACTCACTACTGCGTGCGACCTTCCT
TCCTTCCTGGCTGTCGTGACCCTGGCTGGTGCACCCACTTCATGCCGAAA
GGTGTAGACTGGTGCCCAAAATAAATGGGACGGAAACACACATACACACG
CACACACACATCGGCCGTGTGTCATATCGTGTCAGGTGTGTCGCCGAAGC
CCCTCGCATCTCTCTGTTTTCAAGACCCCCCCCCCCCCTCCTTTCCATGC
ACACGCGTATGTAAGCACGGGGGGGGTTGGCCTTAGCCGGTGCCAACACG
ACGTTGAACGAAAACAATCCGGCGTATGTAATTGCGTAGTAGGAGGGGCA
CGCGGGCAGTAGCATCTTCTTATTTTATTTTTATTCGGTGTGCTCTAATT
TTGAGCCCTGTATTTTTCTGCATGTATGCAATCCGGGCTCATTTTTCCTT
GACCTTTTGCTGCTGTCCCTCCTTTTTCGCGACCGAGAAAAGTTTTCGGT
CTTCTTGTTCACCACCTGCTGCTTTATCTGCGGTATGACAGCGAGTTACT
CGTTAGCCTTGTGACCACGGAATGGTGTGTGTGTAGAGTGTGTATTTTTT
TTGTGGATGTGCTCCCGCGAGCGGGTAGGTGTTTTAGTTTGGTTAGTGAA
ACCGTGTTTCTTGGGATAGACAAAAAAGGGTACGGTGCACTTGACTATGT
CATCCAGTCAACAAAAAAAGGGCTCCCCCTGTGTGATGTACTCCGGCTGA
TCCGTCAAACATGTGAAAAGGTGTTCGTAGACTGGCGCTCCAAGAGATGC
GTGCAAACACACACAGCAGCATCCATGCGTTGAAAAGTGGTCGTATCAAA
TCTTGCTTTCGAGTTTTCGAGATTTATGGTAGTGTGGTGACACACCAATT
AAAAACGCGTGCGATGCCGACTATCATAGCTCCAGAAGCTGTGCGACATA
CCCAATCTGGAATCGCTCCCGAAATGTTTTTTAGAATTTTTTCTTTGACA
CATGATGTCCTCACGTTCATAAACAAATTTTCTTGCTTAAGCTAGAAGAG
GTTAGGTGCGCCTGCCATTCTCCCCCTTCTCACTTCATGCGGCGCGGTTC
GGGGGGGGTTCCACTGGTTTGTGAGGCGTGGTGTAGGACGTACGTAAGAT
GGGCATGTACTGGTGGTACTGGCGGTCTCTCAGCCACTGCTACAGAACTG
GCCAGTTCTGGCACAAATGGTAGTACCTACCGATTTGAATTTCCCCCTTA
TGCCTCTTTTTTTGTAACCAGGCGCTGGCAGCATATGAGGAGATGGAGCT
GCCAGCACTTAGGGAGGAAAAGCCGGGGCTCAAGCTCCGTCAGTACAAGC
AGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig134:401718..406371-

>mRNA_P-littoralis_Contig134.73.2 ID=mRNA_P-littoralis_Contig134.73.2|Name=mRNA_P-littoralis_Contig134.73.2|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig134:401718..406371- (Pylaiella littoralis U1_48)
ATGAGCAACAAGGAGAAGAAGAAGCAGGAGGCGGCGAAACGAGAGGTGCA
GGCGGAGGAGGCTCGCAAGCTGAAGGCCGAAAAAGCCGCTAGAGAGGCCA
AGGCGATGCGAGACTCGGGCATCCAGATGGTGGACGACGGTACCGACCTG
ACCGAGGGCAGCGCCAACCCCAACAGAAAAAACGGGGCCGACGGGGAGGG
GCAGTGGGCCAGCGGCATCGACGCCGCGATCGGAAGCCTGAGTCTCAAGG
GCGGCCGCGGTGGTGGGGGCGGTGGCGCCGAGGAGAAGCATCCGGAGAAA
CGGCTCAAGGCGGTGAGTGCGCGATGGGCGGAAGGTGATCGGGCCAGAAC
AAGCACGCGGGGGGCGCGCGGGGGGAGCGTTGGTGTTTCGTTGCTGCTTG
TTCGTACCGGTACTAGTAGTGTGCATGTTATGATGTGTATCCGCAGAAGG
TGTGGTGGAGGGAAAAACAAAAAAACAAATAACTCACTACTGCGTGCGAC
CTTCCTTCCTTCCTGGCTGTCGTGA
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