mRNA_P-littoralis_Contig134.66.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig134.66.1
Unique NamemRNA_P-littoralis_Contig134.66.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig134.66.1 vs. uniprot
Match: A0A6H5L4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H1_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.600e-10
Identity = 57/102 (55.88%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:  163 PRPIAAALSPQATAAMQLQQYLAAHAANAXXXXXXXXXAANGNNGVVVVGSPSPAPVPRGPPAT-AALFVSSAGTA--TMTATMA-AANSAARAIVGAPRPQ 456
            PRPIA A +PQATAA+QLQQYLAAHAA+A            G  G  V G+   A +PRG PAT A+ F+S AGTA  TM A+MA AA +AAR++VG  RPQ
Sbjct:  243 PRPIAVAPTPQATAALQLQQYLAAHAAHAANAGAIVV----GGGGAPVAGA---AALPRGQPATVASSFISPAGTAAATMVASMAVAAANAARSVVGTARPQ 337
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig134.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4H1_9PHAE1.600e-1055.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig134contigP-littoralis_Contig134:387896..388365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size470
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_005240.1
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789617.7896893-CDS-P-littoralis_Contig134:387895..3883631680789617.7896893-CDS-P-littoralis_Contig134:387895..388363Pylaiella littoralis U1_48CDSP-littoralis_Contig134 387896..388363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig134.66.1prot_P-littoralis_Contig134.66.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig134 387896..388363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig134.66.1

>prot_P-littoralis_Contig134.66.1 ID=prot_P-littoralis_Contig134.66.1|Name=mRNA_P-littoralis_Contig134.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
AAAAAAATGAVAGGGLVKTEAVAGTVGGGAPTPPLLSSIVAANGHHHHYH
HHHQPRPIAAALSPQATAAMQLQQYLAAHAANAHAANAHATNAANGNNGV
VVVGSPSPAPVPRGPPATAALFVSSAGTATMTATMAAANSAARAIVGAPR
PQTVVS
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mRNA from alignment at P-littoralis_Contig134:387896..388365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig134.66.1 ID=mRNA_P-littoralis_Contig134.66.1|Name=mRNA_P-littoralis_Contig134.66.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=470bp|location=Sequence derived from alignment at P-littoralis_Contig134:387896..388365+ (Pylaiella littoralis U1_48)
GCTGCTGCTGCTGCTGCTGCTACCGGCGCTGTCGCAGGTGGAGGTCTGGT
GAAGACAGAAGCGGTCGCGGGCACTGTTGGTGGTGGCGCACCGACACCCC
CGTTGTTGTCGTCTATAGTTGCCGCGAACGGCCACCACCACCACTACCAC
CACCACCACCAGCCCCGACCTATCGCTGCCGCCCTCAGCCCCCAGGCGAC
AGCGGCGATGCAGCTCCAGCAGTATCTGGCCGCGCACGCGGCCAATGCGC
ACGCGGCCAATGCGCACGCGACCAATGCCGCTAACGGCAACAACGGTGTC
GTCGTTGTTGGCAGTCCTTCGCCGGCTCCTGTTCCGAGAGGCCCACCGGC
GACGGCAGCACTGTTTGTCTCCTCGGCTGGTACCGCAACCATGACCGCTA
CTATGGCCGCTGCGAATTCAGCCGCCAGGGCTATCGTCGGAGCTCCGAGA
CCGCAAACAGTGGTATCACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig134:387896..388365+

>mRNA_P-littoralis_Contig134.66.1 ID=mRNA_P-littoralis_Contig134.66.1|Name=mRNA_P-littoralis_Contig134.66.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig134:387896..388365+ (Pylaiella littoralis U1_48)
GCTGCTGCTGCTGCTGCTGCTACCGGCGCTGTCGCAGGTGGAGGTCTGGT
GAAGACAGAAGCGGTCGCGGGCACTGTTGGTGGTGGCGCACCGACACCCC
CGTTGTTGTCGTCTATAGTTGCCGCGAACGGCCACCACCACCACTACCAC
CACCACCACCAGCCCCGACCTATCGCTGCCGCCCTCAGCCCCCAGGCGAC
AGCGGCGATGCAGCTCCAGCAGTATCTGGCCGCGCACGCGGCCAATGCGC
ACGCGGCCAATGCGCACGCGACCAATGCCGCTAACGGCAACAACGGTGTC
GTCGTTGTTGGCAGTCCTTCGCCGGCTCCTGTTCCGAGAGGCCCACCGGC
GACGGCAGCACTGTTTGTCTCCTCGGCTGGTACCGCAACCATGACCGCTA
CTATGGCCGCTGCGAATTCAGCCGCCAGGGCTATCGTCGGAGCTCCGAGA
CCGCAAACAGTGGTATCA
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