mRNA_P-littoralis_Contig134.44.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig134.44.3 vs. uniprot
Match: A0A6H5L442_9PHAE (Peptidase_S26 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L442_9PHAE) HSP 1 Score: 510 bits (1313), Expect = 1.140e-170 Identity = 314/495 (63.43%), Postives = 351/495 (70.91%), Query Frame = 1
Query: 1 HRGRRRVPPPATMAFEKRPEERALGDVLIPEDNTPGGVSSTTEDSDGGGGRVGISVEPPGFLKRLFSVPRNVRRTAATGDVVVPVIGARDGWGGIRQARIGSYDICFCPTHACRLANQGIYPGVEYRILDVSVFPTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQADLDSEPTSVLSSARDAPDGAFDDGGLVFTMRPIYPLVKRLERTDWPVRVAAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVLSQALTLSVISSHSMEPTLQVGDVVLVEKVSRSSLVRRDDIMFFTPPPVLRDVVSKAGGTLNAGDLFVKRVAGLPGDTVTISADGTVDVRPPGGVGAAGRMHSSISGGXXXXXXXXXXXXXXXXXSIDRNFPAGETAAEGEEAPAK--IKARVPVVLPDRVLQRITRVDDKVLENGAVLVLGDNPSASMDSRVWGQLDEKEIVGHALLRVLPPRSFGLLQ 1479
H+ R+ P TM FEKRPEERALGDVLIPED PGG GG +G+SVEPPGFLKR+FS+P+NVRRTAA GDVVVPVIGARDGWGGIRQA +NQGIYPGVEYRIL++SVFPT XXXXXXXXXXXXXXXXXXX Q DLD+EPT+VL+SARDAP +FDDG LVFTMRPIYPLV RLER DWPVRV AREFPVMLTPFSYNAATAWAA TTSLSLL+VGFVLSQALTLSVI+SHSMEPTLQVGDVVLVEKVSRS LV+ +DI++F PPPVL+D+VS+AGGTL+ DLFVKRVA L GDTVT+SADG+VDVR G G R+ + + AG+ + A AK A V LPD VLQRITR+D+KVL +G+V VLGDNP+ASMDSRVWGQLD+ EIVGHALLRV PPRSFGLLQ
Sbjct: 74 HQRRQTRAPALTMLFEKRPEERALGDVLIPED-APGGAGEG-----GGDDAIGVSVEPPGFLKRVFSIPKNVRRTAAAGDVVVPVIGARDGWGGIRQA-----------------SNQGIYPGVEYRILEISVFPTARTPPTGDSTKASSDSAAAVAPYLSSXXXXXXXXXXXXXXXXXXX--------QPDLDAEPTAVLASARDAPPESFDDGSLVFTMRPIYPLVARLERGDWPVRVPAREFPVMLTPFSYNAATAWAAFTTSLSLLSVGFVLSQALTLSVINSHSMEPTLQVGDVVLVEKVSRSFLVKPNDIVYFRPPPVLQDIVSRAGGTLSPSDLFVKRVAALSGDTVTVSADGSVDVRAAAGGGIT-RLPKGTNRADNGGSAAGGESDVILGDGV-----AGQEGSAAAVAAAKGGTLAEEKVALPDSVLQRITRLDEKVLPSGSVFVLGDNPAASMDSRVWGQLDKGEIVGHALLRVFPPRSFGLLQ 531
BLAST of mRNA_P-littoralis_Contig134.44.3 vs. uniprot
Match: A0A835YRZ1_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ1_9STRA) HSP 1 Score: 178 bits (451), Expect = 5.480e-43 Identity = 127/286 (44.41%), Postives = 146/286 (51.05%), Query Frame = 1
Query: 601 LSSARDAPDGAFDDGGLVFTMRPIYPLVKRLERTDWPVRVAAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVLSQALTLSVISSHSMEPTLQVGDVVLVEKVSRSSLVRRDDIMFFTPPPVLRDVVSKAGGT-LNAGDLFVKRVAGLPGDTVTISADGTVDVRPPGGVGAAGRMHSSISGGXXXXXXXXXXXXXXXXXSIDRNFPAGETAAEGEEAPAKIKARVPVVLPDRVLQRITRVDDKVLENGAVLVLGDNPSASMDSRVWGQLDEKEIVGHALLRVLP 1455
L S DAP AF+ G L+ +RPIYPL+ RLER WPV VAAR+ P+ LT F+YN ATAWAAL LTLS I S SMEP L+ GDVVLVEKVSR +L+RR +++FF PPP LR V+ AGG L GDLFVKRVA L GD V ++ DG VR GA R + XXXXXXX A G+ VLGDNP S+DSRVWG L IVG LLRV P
Sbjct: 20 LDSVADAPPNAFEAGDLLLQLRPIYPLIPRLERA-WPVTVAARDVPIALTAFAYNVATAWAALXXXXXXXXXXXXXXXTLTLSFIPSRSMEPVLRPGDVVLVEKVSRGALLRRGEVVFFAPPPALRAAVADAGGAPLRGGDLFVKRVAALTGDDVAVARDGETRVR-----GALVRGAGDLPRAARSRLLLREAXXXXXXXXXXXXXXXXXXXXXXXXXXA----------------------------GSAFVLGDNPLHSVDSRVWGDLPYSNIVGRPLLRVFP 271
BLAST of mRNA_P-littoralis_Contig134.44.3 vs. uniprot
Match: A0A0G4EFP7_VITBC (Mitochondrial inner membrane protease subunit n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EFP7_VITBC) HSP 1 Score: 158 bits (400), Expect = 1.310e-38 Identity = 119/296 (40.20%), Postives = 143/296 (48.31%), Query Frame = 1
Query: 652 VFTMRPIYPLVKRLERTDWPVRVAAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVLSQALTLSVISSHSMEPTLQVGDVVLVEKVSRSSLVR---RDDIMFFTPPPVLRDVVSKAGGTLNAGDLFVKRVAGLPGDTVTISADGTVDVRPPGGVGAAGRMHSSISGGXXXXXXXXXXXXXXXXXSIDRNFPA--GETAAEGE-EAPAKIKARVPVVLPDRVLQRITR-----------------VDDKVLENGAVLVLGDNPSASMDSRVWGQLDEKEIVGHALLRVLPPRSFG 1470
V T+RP Y LV +LER WPV +A E P+ LTP YN AT + L ++ LLAV V SQ +L I S+SMEPTL GDV+LVEKVSR LVR DI+ F PP LR V +AGG L GDLFVKRVA GD VT +D P G T E E P I + P D +QR+ D+ VL +GAV VLGDNP S+DSR+WG+L E EIVGH ++R+ P FG
Sbjct: 160 VITVRPRYRLVDKLER-QWPVTIAMSEVPIFLTPRMYNTATLISTLLSAAQLLAVALVASQFCSLYYIPSYSMEPTLHKGDVLLVEKVSR--LVRPPKNGDIVLFNPPEQLRTFVRQAGGQLAPGDLFVKRVAATQGDRVT----------------------------------------------VDNGLPTINGHTYVYPEPEEPPTIGSDAPPARADGSMQRLAIGRGFAWPYAGEAPSQWVADECVLGSGAVYVLGDNPVRSVDSRLWGELRESEIVGHPVIRLFPWGRFG 406
BLAST of mRNA_P-littoralis_Contig134.44.3 vs. uniprot
Match: A0A448ZBV4_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBV4_9STRA) HSP 1 Score: 161 bits (408), Expect = 3.190e-38 Identity = 103/282 (36.52%), Postives = 155/282 (54.96%), Query Frame = 1
Query: 646 GLVFTMRPIYPLVKRLERTDWPVRVAAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVLSQALTLSVISSHSMEPTLQVGDVVLVEKVSRSSLVRRD---DIMFFTPPPVLRDVVSKAGGTLNAGDLFVKRVAGLPGDTVTISADGTVDVRPPGGVGAAGRMHSSISGGXXXXXXXXXXXXXXXXXSIDRNFPAGETAAEGEEAPAKIKARVPVVLPDRVLQR-ITRVDDKVLENGAVLVLGDNPSASMDSRVWGQLDEKEIVGHALLRVLPPRSFGLLQ 1479
G + ++P+YPLV +LER WPVRV R+ P + TP YN +A+ +L T+ S L V F+LSQA++L I S SM+PTL+VGDV+LV+KVS + R++ D++ F+PP L+++V+K GG L++ DLFVKR+A PGD VT+ DG VDV G+ G + + P R++++ I +DK+++ V V+GD S S+DSRVWG L+ + IVG ++R+ P FG ++
Sbjct: 391 GADYELKPVYPLVAQLER-PWPVRVNERDIPKLFTPSMYNLLSAFGSLFTAASGLFVAFLLSQAISLFFIPSKSMDPTLKVGDVLLVDKVSSRTPFRKNEVGDMVLFSPPSRLQEIVAKNGGNLSSRDLFVKRIAASPGDRVTVYKDGKVDVN-------------------------------------------GQDVVAGRRDLCEAE-------PLRLIEKYIEPREDKIIDQKEVFVMGDCSSVSVDSRVWGSLEAENIVGRPIVRIWPLDRFGKVE 621
BLAST of mRNA_P-littoralis_Contig134.44.3 vs. uniprot
Match: B7G479_PHATC (Mitochondrial inner membrane protease subunit n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G479_PHATC) HSP 1 Score: 142 bits (358), Expect = 7.090e-32 Identity = 112/298 (37.58%), Postives = 149/298 (50.00%), Query Frame = 1
Query: 634 FDDGGLVFTMRPIYPLVKRLERTDWPVRVAAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVLSQALTLSVISSHSMEPTLQVGDVVLVEKVSRSSLVRRD-----DIMFFTPPPVLRD-VVSKAGGTLNAGDLFVKRVAGLPGDTVTISADGTVDVRPPGGVGAAGRMHSSISGGXXXXXXXXXXXXXXXXXSIDRNFPAGETAAEGEEAPAK-IKARVPVVLPDRVLQRITRVDDKVLENGAVLVLGDNPSASMDSRVWGQLDEKEIVGHALLRVLPPRSFGLLQ*IFGVEGAL 1506
+ G + ++P+YPLV++LER WPVRV R+ P +LTP YN +A +L T+L+ L V FVLSQA++L VI S SM PTL GDVVLV+K++ R D++FF PP L+D VV G L DLFVKRVA PGD +T+ G+V V G A R ET E P + I+A + PD R+ G V VLGD S S+DSRVWG L + +IVG ++R+ PP +G + + AL
Sbjct: 347 YSQPGADYELKPVYPLVRQLER-PWPVRVNERDIPKLLTPTMYNTVSAVGSLLTALTGLLVAFVLSQAVSLFVIPSLSMAPTLAKGDVVLVDKLTPRFWGPRTNIPVGDVVFFHPPEPLQDMVVRSTGRRLAPRDLFVKRVAAGPGDVLTVDPSGSVRVN--GATPAVAR----------------------------------ETC---EAEPLRLIEAYLKKASPDNPDGANVRIGP-----GQVAVLGDCASVSIDSRVWGPLPQNDIVGRPVVRLWPPSRWGPVPGLLHAPDAL 599
BLAST of mRNA_P-littoralis_Contig134.44.3 vs. uniprot
Match: A0A1Z5JWA6_FISSO (Mitochondrial inner membrane protease subunit n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWA6_FISSO) HSP 1 Score: 135 bits (340), Expect = 5.330e-30 Identity = 107/290 (36.90%), Postives = 148/290 (51.03%), Query Frame = 1
Query: 646 GLVFTMRPIYPLVKRLERTDWPVRVAAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVLSQALTLSVISSHSMEPTLQVGDVVLVEKVS-----RSSLVRRDD----IMFFTPPPVLRDVVSKAGGT-LNAGDLFVKRVAGLPGDTVTIS-ADGTVDVRPPGGVGAAGRMHSSISGGXXXXXXXXXXXXXXXXXSIDRNFPAGETAAEGEEAPAKIKARVPVVLPDRVLQRITRVDDKV-LENGAVLVLGDNPSASMDSRVWGQLDEKEIVGHALLRVLPPRSFGLLQ 1479
G+ + ++PIYPLV++LER WPVRV R+ P + TP YN +A +L T+++ L F++SQA+++ VI S SMEPTLQVGDV+LV+KV+ + +L + +D I+ F P L+D+V K+GG L +LFVKRVA PG T+ I+ A G V+ ID P GEE P R++++ R D+ + V VLGD S S+DSRVWG L IVG LLRV P G +Q
Sbjct: 261 GVDYELKPIYPLVQQLERL-WPVRVNERDIPKLYTPAMYNGISAVGSLLTAVTGLLAAFLVSQAISIFVIPSRSMEPTLQVGDVLLVDKVTPRLTNKLNLNKYNDWVGNIILFHPTESLQDIVLKSGGRKLTDRELFVKRVAAGPGSTLKITDASGAVE--------------------------------------IDGRKPLERRDFCGEE-------------PTRLIEKFLRQGDEFQVGPKQVAVLGDCSSVSIDSRVWGPLPTDNIVGRPLLRVWPLSRVGQIQ 498
BLAST of mRNA_P-littoralis_Contig134.44.3 vs. uniprot
Match: A0A7S3RCX6_EMIHU (Mitochondrial inner membrane protease subunit n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RCX6_EMIHU) HSP 1 Score: 131 bits (329), Expect = 6.180e-30 Identity = 103/289 (35.64%), Postives = 143/289 (49.48%), Query Frame = 1
Query: 643 GGLVFTMRPIYPLVKRLERTDWPVRVAAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVLSQALTLSVISSHSMEPTLQVGDVVLVEKVSRSSLVRRD--DIMFFTPPPVLRDVVSK----AGGTLNAGD-LFVKRVAGLPGDTVTISADGTVDVRPPGGVGAAGRMHSSISGGXXXXXXXXXXXXXXXXXSIDRNFPAGETAAEGEEAPAKIKARVPV---VLPDRVLQRITRVDDKVLENGAVLVLGDNPSASMDSRVWGQLDEKEIVGHALLRVLPPRSFGLLQ 1479
GG+V ++RP Y LVK+LER+DWPV V P TP +YN A A ++ LAVG +L+ ALTLSV+ S SM P +Q DV+LV+KVS R + +++ F PP LR++V + AGG G+ LF+KR+A GD + PP ++ FP G +G + + A PV V P R + DD A +VLGDN + S+DSR WG L ++E+ G LLRVLPP FG+++
Sbjct: 85 GGVVVSVRPAYDLVKKLERSDWPVSVPFSLAPRWYTPRAYNTLVASFAALIAVGWLAVGALLASALTLSVVPSDSMLPAVQRRDVLLVDKVSPRLGWRPESGELVLFRPPDALREIVRRQSAVAGGGEGRGEALFLKRIAARGGDAAS----------PP---------------------------------EVEV-FPDGAATIDGRRIRSAVAADSPVARFVAPTR----FSLADD------AYVVLGDNEAVSVDSRCWGPLRQREVAGRPLLRVLPPGRFGVVK 319
BLAST of mRNA_P-littoralis_Contig134.44.3 vs. uniprot
Match: A0A7S1CZJ0_CYCTE (Mitochondrial inner membrane protease subunit n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZJ0_CYCTE) HSP 1 Score: 129 bits (324), Expect = 6.890e-30 Identity = 100/300 (33.33%), Postives = 137/300 (45.67%), Query Frame = 1
Query: 580 DSEPTSVLSSARDAPDGAFDDGGLVFTMRPIYPLVKRLERTDWPVRVAAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVLSQALTLSVISSHSMEPTLQVGDVVLVEKVSRSSLVRRD---DIMFFTPPPVLRDVVSKAGGTLNAGDLFVKRVAGLPGDTVTISADGTVDVRPPGGVGAAGRMHSSISGGXXXXXXXXXXXXXXXXXSIDRNFPAGETAAEGEEAPAKIKARVPVVLPDRVLQRITRVDDKVLENGAVLVLGDNPSASMDSRVWGQLDEKEIVGHALLRVLPPRSFG 1470
D+E V S P G +D ++PIYPLV +LER WPV V E P + T YN +A +L T+ L V + LSQ ++L I S SM+PTL VGDVV+VEKVS + D++ F PP L+++V +GG + DLFVKRVA P VT+ +DG V + +E + K + P +++R +++ V V+GD S S+DSRVWG L KEI+G L RV P FG
Sbjct: 5 DTEGNEVFGSV---PGGKYD-------LKPIYPLVDQLER-PWPVTVNEAEIPRLYTVGMYNTVSALGSLFTATFGLGVAYALSQMISLFFIPSRSMDPTLAVGDVVVVEKVSPRIFKSNNHVGDVILFHPPSRLQEIVKSSGGRIGNRDLFVKRVAAEPTQKVTVGSDGKVLI---------------------------------------------------DEMELQEKRDMCSEEPLGLIERYIEPGTTEVQSDEVFVMGDCSSVSIDSRVWGPLPNKEIIGKPLFRVWPIERFG 242
BLAST of mRNA_P-littoralis_Contig134.44.3 vs. uniprot
Match: R1E2Q1_EMIHU (Mitochondrial inner membrane protease subunit n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E2Q1_EMIHU) HSP 1 Score: 134 bits (336), Expect = 2.990e-29 Identity = 110/316 (34.81%), Postives = 154/316 (48.73%), Query Frame = 1
Query: 643 GGLVFTMRPIYPLVKRLERTDWPVRVAAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVLSQALTLSVISSHSMEPTLQVGDVVLVEKVSRSSLVRRD--DIMFFTPPPVLRDVVSK----AGGTLNAGD-LFVKRVAGLPGDTVTISADGTVDVRPPGGVGAAGRMHSSISGGXXXXXXXXXXXXXXXXXSIDRNFPAGETAAEGEEAPAKIKARVPV---VLPDRVLQRITRVDDKVLENGAVLVLGDNPSASMDSRVWGQLDEKEIVGHALLRVLPPRSFGLLQ*IFGVEGALRE*DGVARDANGEPKGRS 1560
GG+V ++RP Y LVK+LER+DWPV V P TP +YN A A ++ LAVG +L+ ALTLSV+ S SM P +Q DV+LV+KVS R + +++ F PP LR++V + AGG G+ LF+KR+A GD + PP ++ FP G +G + + A PV V P R + DD A +VLGDN + S+DSR WG L ++E+ G LLRVLPP FG+++ +F G++ A A+ E RS
Sbjct: 69 GGVVVSVRPAYDLVKKLERSDWPVSVPFSLAPRWYTPRAYNTLVASFAALIAVGWLAVGALLASALTLSVVPSDSMLPAVQRRDVLLVDKVSPRLGWRPESGELVLFRPPDALREIVRRQSAAAGGGEGRGEALFLKRIAARGGDAAS----------PP---------------------------------EVEV-FPDGAATIDGRRIRSAVAADSPVARFVAPTR----FSLADD------AYVVLGDNEAVSVDSRCWGPLRQREVAGRPLLRVLPPGRFGVVKELF--RGSIPGMSLAAVSASTEASARS 328
BLAST of mRNA_P-littoralis_Contig134.44.3 vs. uniprot
Match: A0A1Z5KRR1_FISSO (Mitochondrial inner membrane protease subunit n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRR1_FISSO) HSP 1 Score: 126 bits (317), Expect = 7.120e-28 Identity = 102/287 (35.54%), Postives = 144/287 (50.17%), Query Frame = 1
Query: 646 GLVFTMRPIYPLVKRLERTDWPVRVAAREFPVMLTPFSYNAATAWAALTTSLSLLAVGFVLSQALTLSVISSHSMEPTLQVGDVVLVEKVS-----RSSLVRRDD----IMFFTPPPVLRDVVSKAGGT-LNAGDLFVKRVAGLPGDTVTIS-ADGTVDVRPPGGVGAAGRMHSSISGGXXXXXXXXXXXXXXXXXSIDRNFPAGETAAEGEEAPAKIKARVPVVLPDRVLQRITRVDDKV-LENGAVLVLGDNPSASMDSRVWGQLDEKEIVGHALLRVLPPRSFG 1470
G+ + ++PIYPLV++LER WPVRV ++ P + TP YN +A +L T++ L F++SQA+++ VI S SMEPTLQVGDV+LV+K++ + +L + + I+ F P L+D+V ++GG L +LFVKRVA PG T+ I+ A G V+ ID P GEE P R++++ R D+ + V VLGD S S+DSRVWG L IVG LLRV P G
Sbjct: 129 GVDYELKPIYPLVQQLERL-WPVRVNEKDIPRLYTPAMYNGLSAIGSLFTAVMGLLAAFLVSQAISIFVIPSRSMEPTLQVGDVLLVDKLTPRLTNKLNLNKYSEWVGYIVLFRPTESLQDIVLQSGGRKLTDRELFVKRVAAGPGSTLKITDASGAVE--------------------------------------IDGRKPLERRDFCGEE-------------PTRLIEKFLRQGDEFQVGPKQVAVLGDCSSVSIDSRVWGPLPTDNIVGRPLLRVWPLSRVG 363 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig134.44.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig134.44.3 >prot_P-littoralis_Contig134.44.3 ID=prot_P-littoralis_Contig134.44.3|Name=mRNA_P-littoralis_Contig134.44.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=482bp MAFEKRPEERALGDVLIPEDNTPGGVSSTTEDSDGGGGRVGISVEPPGFLback to top mRNA from alignment at P-littoralis_Contig134:252771..256629+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig134.44.3 ID=mRNA_P-littoralis_Contig134.44.3|Name=mRNA_P-littoralis_Contig134.44.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=3859bp|location=Sequence derived from alignment at P-littoralis_Contig134:252771..256629+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig134:252771..256629+ >mRNA_P-littoralis_Contig134.44.3 ID=mRNA_P-littoralis_Contig134.44.3|Name=mRNA_P-littoralis_Contig134.44.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1446bp|location=Sequence derived from alignment at P-littoralis_Contig134:252771..256629+ (Pylaiella littoralis U1_48)back to top |