mRNA_P-littoralis_Contig134.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig134.42.1
Unique NamemRNA_P-littoralis_Contig134.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig134.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig134contigP-littoralis_Contig134:250988..251519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size532
Hectar predicted targeting categorymitochondrion
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789615.2985845-UTR-P-littoralis_Contig134:250987..2510721680789615.2985845-UTR-P-littoralis_Contig134:250987..251072Pylaiella littoralis U1_48UTRP-littoralis_Contig134 250988..251072 +
1680789615.3192878-UTR-P-littoralis_Contig134:251375..2515191680789615.3192878-UTR-P-littoralis_Contig134:251375..251519Pylaiella littoralis U1_48UTRP-littoralis_Contig134 251376..251519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789615.3081012-CDS-P-littoralis_Contig134:251072..2513751680789615.3081012-CDS-P-littoralis_Contig134:251072..251375Pylaiella littoralis U1_48CDSP-littoralis_Contig134 251073..251375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig134.42.1prot_P-littoralis_Contig134.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig134 251073..251375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig134.42.1

>prot_P-littoralis_Contig134.42.1 ID=prot_P-littoralis_Contig134.42.1|Name=mRNA_P-littoralis_Contig134.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MSAAVANNSLHTYAQLSAALRILTRIRCNKVLCTLGVRSSPQRGITHVER
EYTRYAVTIKTKACRCAPVCSRKAQQTPLRCFSRSLRFCKRISIYSAKSF
*
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mRNA from alignment at P-littoralis_Contig134:250988..251519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig134.42.1 ID=mRNA_P-littoralis_Contig134.42.1|Name=mRNA_P-littoralis_Contig134.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=532bp|location=Sequence derived from alignment at P-littoralis_Contig134:250988..251519+ (Pylaiella littoralis U1_48)
TTTGGGATCCATGACCGAAGAACTCGGCAAGAAATGTGTTATTGGGTGTT
GAACACGTTACGTTTGGAGGCCACAAAGGCCCAACATGTCAGCCGCCGTG
GCCAACAACTCTCTGCACACCTATGCACAGCTGAGTGCTGCTCTTCGGAT
TCTCACCAGAATCCGCTGCAACAAAGTGCTCTGTACTCTGGGAGTTCGCA
GCTCTCCGCAGAGAGGTATCACGCATGTTGAGAGGGAGTACACACGTTAT
GCTGTGACCATCAAAACTAAGGCATGCCGATGTGCACCGGTGTGCTCCCG
GAAAGCACAGCAAACACCTCTCCGTTGTTTTTCTAGGTCTCTTCGTTTTT
GCAAACGCATTTCGATCTATTCAGCTAAGTCTTTCTGATTCGTGAATAGG
ATTAGCTTCTCGGAACAAAAAGCTGGTTTCTAATCTTAACTTCTAACATC
ACTCAACTCCCAATAAGAGCCATTTTCAATTTTCGATGTTCAACTTTCGA
TTCGGGGAATTTCTGTTCAGACCAATCCCGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig134:250988..251519+

>mRNA_P-littoralis_Contig134.42.1 ID=mRNA_P-littoralis_Contig134.42.1|Name=mRNA_P-littoralis_Contig134.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig134:250988..251519+ (Pylaiella littoralis U1_48)
ATGTCAGCCGCCGTGGCCAACAACTCTCTGCACACCTATGCACAGCTGAG
TGCTGCTCTTCGGATTCTCACCAGAATCCGCTGCAACAAAGTGCTCTGTA
CTCTGGGAGTTCGCAGCTCTCCGCAGAGAGGTATCACGCATGTTGAGAGG
GAGTACACACGTTATGCTGTGACCATCAAAACTAAGGCATGCCGATGTGC
ACCGGTGTGCTCCCGGAAAGCACAGCAAACACCTCTCCGTTGTTTTTCTA
GGTCTCTTCGTTTTTGCAAACGCATTTCGATCTATTCAGCTAAGTCTTTC
TGA
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