mRNA_P-littoralis_Contig134.117.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig134.117.1
Unique NamemRNA_P-littoralis_Contig134.117.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig134.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig134contigP-littoralis_Contig134:508398..514194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size259
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789615.2494218-CDS-P-littoralis_Contig134:508398..5084561680789615.2494218-CDS-P-littoralis_Contig134:508398..508456Pylaiella littoralis U1_48CDSP-littoralis_Contig134 508399..508456 -
1680789615.2696497-CDS-P-littoralis_Contig134:513994..5141941680789615.2696497-CDS-P-littoralis_Contig134:513994..514194Pylaiella littoralis U1_48CDSP-littoralis_Contig134 513995..514194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig134.117.1prot_P-littoralis_Contig134.117.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig134 508399..514194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig134.117.1

>prot_P-littoralis_Contig134.117.1 ID=prot_P-littoralis_Contig134.117.1|Name=mRNA_P-littoralis_Contig134.117.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
QHRAHAALCSYSSSKDSCCCLLYSSTAVLSRCISTSVVACLLEHGVSSCC
RSVDGTTTTMSRKRTCRTRKSSGSTACSPVALKREH
back to top

mRNA from alignment at P-littoralis_Contig134:508398..514194-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig134.117.1 ID=mRNA_P-littoralis_Contig134.117.1|Name=mRNA_P-littoralis_Contig134.117.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5797bp|location=Sequence derived from alignment at P-littoralis_Contig134:508398..514194- (Pylaiella littoralis U1_48)
CAGCACCGAGCGCACGCGGCGTTGTGCTCGTACAGCAGTAGTAAAGACAG
CTGCTGTTGTTTGTTATACAGCAGTACTGCTGTATTATCCCGCTGTATCA
GTACGTCTGTCGTTGCTTGCTTGTTGGAGCATGGCGTGAGCAGCTGCTGC
CGGTCCGTGGATGGAACAACAACAACAATGTCGCGCAAGAGGACTTGTAG
GTGAGAACACGTTTTGACAACTGCTGTTCCACCCCGTATAAAAGTACCAG
TATGGACTATACTAAATAATAGTACTGCTTGTACCATGTTGTATCAGTTG
TATACATATATCTTCCTTGACGGAGACCAAGCCCTCCTACGGCAGTTCTA
CAGTATCATCATCAACATCTGGCAATCGGGAAGGGTGCCACAGCAGTGGA
AAGATGCTTCGATCAAGGTGCTGCACAAGAAGAAGGACAAGACGGAATGC
GGCAATTACCGAGGCATCTCCTTGTGGCCTACGCTGGTAAGGTACTCTTG
AAGCTGGTCGCCACCCGGCTAAGCGATTACTGCGAAAGAGAGGGCATCCT
GCCGGAGGAACAGAGCGGATTCCGACCAAACCGCTCAACGGTTGACATGA
TGTTCGTGGTTCGACGCCTACACGAGCTTGCACGGAAGAAGTCAACCCCA
CTGTACGCCTGCTTCATTGACCTCACGAAAGCCTACGACTCCGTAGACCG
GGAACTACTGTGGTCGGTGCTCAAGCGGCTCGGAGTGCCCCAAGATGCTT
GCGGTCACTCGCCAATTCCACGACGGAATGAGAGCATGCGTACGGATGGA
CGACGGGAGGTGCTCCGACTGGTTTGATGTGGGGCAGGGACTCCGTCAGG
GATGCAATCTGGCACCCCTGCTGTTCAACCTTTTCTTTGCTGCGATGCTC
ATGGTGGCCTTTGCCGAGATCAGCAAGGACGCGGAGGTGATGGCGGACAT
GGCCAAGGTCAAGAGGAAGGTGACGAAGGGGAAGGGGAGGAACGCCCGAC
TGGTGGAGGCAGTGAAGTCCATCTGGAGTATGCTCTACGCCGACGACGCC
TGTATTGTATCTCAATCACCTGGGAGCCTTGAGAAGATGATGTCGATCAT
CGTACGTGTGGCCGGGCGGTTTGGGCTGTTGGTGTCAGAACCCAAGACGG
AGACCATGTGTATGCTCGCGAAAGGGATGGAGGCGTGCTCGTTCACGATC
GACGCTGCCGGGATGGTCTTCAAGCAGAAGAAAGACTTTGTGTATCTCGG
GGGTAAGATTTGTGAGGACGGCAGCATTGAGGGCGAGATTAACCACCGAG
TGCAGCGAGCGCACGCCTGCTTCCGGCGCAACAGCCAGGCAATGTACGAC
CGCCCGGGGGCCCCTCTTCGACTAAAAGTACGACTCCTCCAAGCTGGCTG
CATCGGATGGAAAAAGGAGAGAACAGACCGACCCTCTCCTACGCCAAAGC
CCTGATCACCGCGGGTTGCAACGAGAGCGTTGAGGCCACACTGCGCAAGC
GGCGACTGTGCTTCGCAGGATTCGTTGCGCGCATGAGAGACGAGAGACTC
CCGAAAATTGCTCTCTTGGGAGAATTGCAGGGGGGAGCAAGGTATCTGGG
GGGCAAGAGTTTGACTGGCTGAGGCGAATGCGGGAGGACCTCGAAGCGTT
CGACATCGTGGTCGACAAAAAGGAGGGGTGGGAGGCAAGTGCCAAGAGAG
CTGACGAGTGGTACGACAGGGTCGACGAGGGTGCGCGGCGGTTCACGGAC
GAGTGGCTCAAGAAAGAGGAGACCTATCAGAGACACGTCGACGGAAAAGA
GAGAGGACGCGGCTGAGAGGCAGGCCTTGACGAAAAGAGGGAGAACGGAT
GGCGGGGGTAAACGAGAAGAGGAGTACGGGGGGGCACAAGGGCAGCGGGG
TAGTGGGGTTGGAGTTGCACAGCACAAGAAGAAGCAGTCCAATGCCAAGC
TACGGGGTGGCCGGAGTGGAAAACCTGTAGGGCGGAGTGGTGGTGTAGCT
GCTGCCAAAGATGTGGGGCAGAAACAACTGGGTACGGTGGTGCCAGGAGC
AGGAGGCATGAGTGCGACTGAGGAGAGCAAGCGTGAACAGGCAGACCTCG
TGGCAAGACACGTTTGCGATTGATTGCATGCCTTTTATTTTATTTTTATC
ACCTTCCCCTCCCCCCCCGACTTCCGGTACTTCCGATCTTCTTTTCCCTT
TTCGTTCCCCTGCTTCCTCTTTGTTTGGCGGCGGCCTGTTTGTTATGTTT
GTGTACGAATGCACTCCCTCAGTCTTTGTGCCCTCCCTGTATCTTCTTCT
TTTTTATTTTATTTTTGTCTTTCGTCTGTTGATCATATAGTTACTGGGCC
ATCGCCCTGGTTTGCGTCTGCTTTGGTCTGTCATGGCCCTGGGCCCTGGT
TCGATGCACGAAGTACTTCGAAGTATATGGTTATGGTTGAGGTTTGTCTT
GGTTATTTTTTGTTTGTCGGACTGTTTCCAATTTTTGTTTTTCTTTCGAG
CCTGTTATTATTTTTTCTGTATTTGTTTGGTATCCTGGCCACCACAGATG
GTACCCCAACGGTACCACGTCTGATCTGACTGTGGGTGATCATAGTCCAT
ATATTTTATTTTTTATTTTTTTCCTCCTAGCACGATATGTGCCTGGTTTG
TGACCACGGGCTAGACTGCGGCGGTAGTGAGCTAATGTGAGAATCAACAA
CAATATATACGTATACTGGTGTGTATATATATATATATACGCTGGTCCTC
CGCTGCTGTCGTTGCGAGTTGCTGCTGGCTGCTGCTGCTCTATGCCAGGG
TATATGCGATAATACTACTTGATTGAGCTGTAGAATAGTGGTAGTATACA
ACAGCAGCAACGACAGCAGTTTTTTGTACCGCTGCTGAGCTGCTGTAATC
CGCGTACTGCGTACTTATTCCTATATTAGGCCTTGCGTCACTTGCTCCTT
TGTCTCCGTGTTCTGTGCTGTAAGAGACAGGGTTTTTTCCGCACGACGGC
GGTGGGAATGGTTGTACAGGATAATGGACTGCCTCTTGCAAGAAATATAT
GGGATACAATATAGTGCCTGATGTAAACGAAAACCCGAGATTGTCTGAGA
TTGTCTGGGTCGTGTACAGATAACAGCGCGAGAAGTTCTATGCAAGGTCG
TCACCGGCGTCCTGGAAGGCACGGCGTTGTGTGCGCATAAAATCTTGGTG
AAAATGCGTGATATAGCATGAAAAAAAAATCTTAAACGTCCGTATTTTGT
TTTTTTTACAACCCACTAATTTCAAGTCAAACGGCAGACTACGATTTTCT
GTAAATATAATAAAGTATGACGGCAGGTACAGCTGGGTGACATGTAGACC
GATCAGAGACCCCCACACAGCCGGTCAGCGAGAGTTGTTGTGCCTGTCAC
AAGATCAGTGCTTAACCATGCAGTGCTTGGATATGCCGAGGCCGTGTACC
CTCTCTGTCAATGAGACGATCGTACGAAGTACGAAGTGCCGGGGTATGGC
ACAGCAGCACTCATGTATGACATAATGTACTTCGTATGTTTTTTGTGCAT
TGCTGGCACTCTACACTTTGATACATAGGAGAGTAACGTAAAATCCAGGT
GTCATGATACTGGTCCGAGGTCAACCGAAGTCTGCTTGCCCTCTCCGTCT
CTGTCTCACTGTCTATAACATTCAGGCTCATAGCTCATAATGATCAGGAA
ATGTGCCCTCGCGTGTGATTTGTACTCCTTCTTGTAGGGTTTTGGATGAA
ATGACCGTAGAATTCAGGCTGAGCCAGCTCAATGACATACTGCAACGTAC
GGTGGAAACGATGGAGGGGATGATGTCATACAGGGAAAGAAGGCGATGGC
GATACTGCAGAATTGGTGCGGCGAGAACTGTTCGTTTGAGAAGGTCTTCG
GCTCTGTCCGTGGGATTCTACCGGCCACCGCACCCGGCAGGAATACGCCG
GTAAGCCAATCGTTGCAACTGTGCTATCGTAAACTCTGTTGGTGTATTTT
TACGATTCCGCTCGTTTAAAGGCCACGAGGCTGGATTTGGTTGGTTGATT
GAGCTGGGTTGATTTGGTTGAGTTGGTTAGAGGGTTAAATGAAATTGGGT
TTGTACAGGAGTGGCGTTGCGCCAAATACGAAACGGCTTGAATATGTTAC
GTTAGATTGAGTCAAGCGTGTAAATATCACGGAGCGGGCGCCCTTCCCAG
CGTGGCCATCAGACATTGTGTTCGCTGTTGCCAAGGTGCTAGTAACTTAA
AATGAACCCCACCGCGTAGCGCGAATAAGAACGGTGTCAGCGGCAACTGT
TGTAATTCGTGGCTTTGTGTAGACCGCCTACCTGTTCGATAGAATCAATT
TATTGGGAATGATTATTCCATGTTCTGGGAGGCATATTCGTACAACAGGA
TTTTGTCGCGAGGCAGAGCGTTTCGCTGAACCTTTTCTGCCCCTGCCTCC
GAACCCTGCCTCCGAACTGGATCCAGAATCTACCACGGTTGGACCGGTAC
GCAACGGCGCTTATCCCACAACGGCTGCGCCACATTTGGGAAGCGTGGTT
TGTCGAAACCGACGGAAACTGCTTGTGGCGTGCCCTCGCCAAGGCCTTGT
GGGATTGCGACCAGTTTTGGCCCATTTGAAGGTTGTGGTTTTAGGATGGA
CTGCTGTGAACGCGGGAGCCCTTGTAGAAGATGGTGGAGTCCTTTTTCGC
TGCAAGAAATTCTATTCGCAACCCGTCGTCGAGAAGTATTCGTGCCCGCT
GACTCAAGTGGGCTTACTTGTGATGCGGTCGACAACGCCTCATGATGGTC
CTGCAGTCCATCCTGGAATTTTGCCCAAATAAAAGTGGGGCGGAGACCTT
ACCGCGCTCTGGACATCTGAAGCGCTAGGCATCACGGTGAAATTGGTTGT
TCCTGTTGACTGACGCGGAAGAAAAACAGGCGCGGAAACCGGGTGGAGGA
ACTGGTAGGAACGGGGGCAACCGCGAGATATTAGTCGCAGCTCTCGTTGT
TTCCGACCCGATAAGGGACAGAGTGGCGCGTACATGGGCAAGAAGATCGT
GTTGTGGATGAGGTCGCTGTCGCTTTGACGGGGTTGCACACGCGCGAGTT
CATCGACGTCGTACACATCCCCTGAAGCAGGCGGACTGAGGATCGTACGG
ATTGTGTCACTTTGCCGCAATCAAGACGAAGGACAAGAGCACCCGTCCGT
TTCCACCTCGCCGCGGCCGCGCCCTCATTGTTCCCGGTCCACGTGAGTGT
CGAATGGCGCTGGTTTTGGGGCTGGTTTTGTTGTCGTAGGTGGTTGCTCC
GTGATGTAGGGAAAAGGATGTAGCATCAGGCTTCCATTATGAAGTCGTTT
TATTTTGTGAATGTTATATTGTTTGGTGAGCACTAGCGATTATTTTGTCC
GCGTAGCTTTGAGTATTCAATGCACGAAGAAGGTCAAAAATAAGCACGAC
AAGGTAATCAGATCTTCCGTCGCCCCCCTGACTTCCCATACGTGCAGAAT
GGGACATGGAGGCGGCCGACGCTTCCGAACTAGCTGGAAAAATGGTTTGT
TGGCTTTTTTGCAACAGCCGTTATCATGGAGATAACCATAATCTATCTTC
ACCAACACGTCCGTATTGACGGTCCAGCTCGTATTGGATGAGAAATATAT
TATAACAATATGTAGCATGTTCGACGGAGGGCGATTTTGACGGCAAGTCT
GCACAGTTAACCCTGTCATTTACCGTCGTGTGTGTCAGGACAAGGAAGTC
TTCTGGGTCGACGGCCTGCAGCCCAGTGGCGCTGAAGAGAGAACACG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig134:508398..514194-

>mRNA_P-littoralis_Contig134.117.1 ID=mRNA_P-littoralis_Contig134.117.1|Name=mRNA_P-littoralis_Contig134.117.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig134:508398..514194- (Pylaiella littoralis U1_48)
CAGCACCGAGCGCACGCGGCGTTGTGCTCGTACAGCAGTAGTAAAGACAG
CTGCTGTTGTTTGTTATACAGCAGTACTGCTGTATTATCCCGCTGTATCA
GTACGTCTGTCGTTGCTTGCTTGTTGGAGCATGGCGTGAGCAGCTGCTGC
CGGTCCGTGGATGGAACAACAACAACAATGTCGCGCAAGAGGACTTGTAG
GACAAGGAAGTCTTCTGGGTCGACGGCCTGCAGCCCAGTGGCGCTGAAGA
GAGAACAC
back to top