mRNA_P-littoralis_Contig134.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig134.87.1
Unique NamemRNA_P-littoralis_Contig134.87.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig134.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig134contigP-littoralis_Contig134:435930..439757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size241
Hectar predicted targeting categoryother localisation
Exons2
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789615.171271-CDS-P-littoralis_Contig134:435929..4360251680789615.171271-CDS-P-littoralis_Contig134:435929..436025Pylaiella littoralis U1_48CDSP-littoralis_Contig134 435930..436025 -
1680789615.1808074-CDS-P-littoralis_Contig134:439613..4397571680789615.1808074-CDS-P-littoralis_Contig134:439613..439757Pylaiella littoralis U1_48CDSP-littoralis_Contig134 439614..439757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig134.87.1prot_P-littoralis_Contig134.87.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig134 435930..439757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig134.87.1

>prot_P-littoralis_Contig134.87.1 ID=prot_P-littoralis_Contig134.87.1|Name=mRNA_P-littoralis_Contig134.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=80bp
QKSIVSFFSPVPDLLPVPTTDFPVLPALADDESGAIGTGLSPMDFEIDKE
HGRITRGAQEKRGEGTCSLAGSQDRLYETL
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mRNA from alignment at P-littoralis_Contig134:435930..439757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig134.87.1 ID=mRNA_P-littoralis_Contig134.87.1|Name=mRNA_P-littoralis_Contig134.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3828bp|location=Sequence derived from alignment at P-littoralis_Contig134:435930..439757- (Pylaiella littoralis U1_48)
CAGAAGTCCATCGTATCGTTCTTCTCTCCCGTCCCTGATCTTCTCCCCGT
TCCCACGACGGACTTCCCAGTCTTGCCTGCTCTCGCAGATGATGAAAGCG
GCGCAATTGGGACGGGACTGTCACCCATGGACTTCGAGATAGACCTCGGC
TTCGAGTCGGACTGCGGTGGTAAGAGTGGCGAGGGTGCCGAGCACACTAA
CGCCCTTGCCGACTGGGTTGGAGGTGACGAAATGTCTCGTGTGGACCTCG
GGCCTGCTTGTGAAGAAAGCTCCGCATCGGAGGGTATGGTGTTTGGTTAT
GCGGACGGGGAATCGTCATCTGGAGATTCCGATTGGAACGATGATGCTGC
AGCACGGGCGAGTGAGATGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAAG
AGGAGGAGGAGGAGGAGGAGGATCAAGACCGCGGGCAAGAGCAACAACAG
ACACCAGCAGCGAACAAGAACCCCGCTCCTGCAACACGTCAGACCACCTC
GTCGAAGCCTGCCCCACGCTACTTTGAGCAACCCAAACGTAGACCCACAG
GTCTCCCAGGGGGCTCGGGGCGACCAACAAGGAGACCTGAGAGCTGGACC
AAAGAGACTTTACCTAATCGTGGGAAGAAGCGAACCCCGTCTCGTTGGCG
ACGTTTCAAGCTCACCATTAACCTCACTCCTTCTGTTAAAAATATACCAT
TTCATACCGCACAGGTTGGAGTATGACCCCACGCTTCTATCCAGCGATAT
GGCTGCTTTGACGGCCAATGTGAGTATGGACATTGCGGTCTGGGTGCATC
GTCCGCGGCAGCCGCTTTAAGATCCAGTCGCAGCAAGCGCAGCCTCCACT
TTCATCAAGACGAGGACATCCCGAACGATGTTTCGGGAATACCTCGACGA
GCGCATCTACCGCCGCAAGAAGACTGATCCACAACTACGTGTTCAAGACG
TGTCCACAGGAAATCATGCCGTAGTTGCATATATGCACAGTGCGTTTTTT
TCACACTAGATATGTTGACGCAGTGACTTGTTCTGAGATTCTATTACATA
CATGTATACTCCATGAAATGACAAATGCGTGGTTTTCCGTGTTCGTGTGT
TGCTGTTTGACAAATTGGATAAACACGGTGCTGCTTAAAGACTTTATCAC
GGAAGAGTCGCCAAGAGTTTCGTTGCGGACAACACACGCATGGATGCAAG
CCGTAGGGTTTAGATGGCGACGCCACCGGAAGTGCGTGTACGTCGACGGC
CACAACAGACCAGACGTGGTGGAGCACCGACAGACATACGTACAGACGAT
GCTGGCTGTGCGGACTTCGACAGCTATGTGAGTGCAAAATGTACCTGACG
ACGATGTTTTGTGACCCCCTCACCCCCACTCCCCACCGCCAGAAGTATGC
AATGAGTACACAAACGCAGAGCCCGATTGTAGCATGAAACTAATCCAGTT
TTATTTTGCCGTCCTTGTCGCCGCTATCGTGCCATCTAGAAACAGGGGGA
GGGACCTGAAGCAAGGGAGGTGATGCTTTGGGGAAGTCGCGGGCGAGAAG
GAGCAGTGTATGGTCGAGCTTGCGGGGGGTGCGACTGGGGAGAAATTCCA
CAACCAAACAACTAGCGGAGTTCTGGTGGCATGTCGGACGCCGGAGCAAG
TAAGGCTTTGGGCGACACCGCCGATGCGAACCCCTTCGCCACTCCTCTTC
CTCCTGGCTGGGAACTGCGTGTGCCGAAAGACGTGATGGAGGTAATATAC
CACGACGAGTGCGCCTGGAAAGAGAATGACGACGGCGGCCAGGGATGGGA
GAATGATGGCAAGGGCGCAGCAATGAAGCAGAAGGGGGAGGAGAGAGCGG
TCATGGCGTCAGACTTCATCGGCGAGGAAAGGGGGCAGATGGAGATTCCA
GAGGCTGTGGGAAAATCATGGTGGAGACTGGCCAAATTCCTACGGTAAGA
CCATGATCTCGGCAATCGTTTGCCCGTTCAGTGCATAGCCGTGCAGTTGA
TTCTACAGGCGTAGTCGAGTGAAACAGCAACAGGTCTTGAAACGTCGTTA
GCAACAATTATTTGCTCGAATGCATCGCCGTTGTGATCACCGTCGTCAAC
GAAATTATTTTTCATCTATACATTATATAAACCATGGACCGCCCAGGGAA
TACATTATCTTTCGCCTCGCGCATTGGTTTCGAGTGTCCATACGGTGTAG
GCCAAAGGGAAGTATGTTTGCTGTTTTTTTTCTGTCATGTGTTGTAAACC
CCCTTGTGTTTTTGCTCTATTTTGGCAGGCTTTGTTTGTGGTGTTCGAGC
TGTCTAGGGAGCCCGGTCGACAGATGTTCAACATCTTCGACAACTCCACC
GGGCATGCAGCCTACAGCCCCGATGCCTTGAGGGCGCAAAACGTCGCCGC
AGGTGCGGGGGGTCAGCAGGCAGTCCCGCGCCCGTTTGTTCACGAAGGCC
GACGGATACCTACAGTGTTCGAGGAGGGCAGCGTGCTTTTATTCGACACG
AATCCAACCCCCAAGAAGGCAGAAGAGGGAGATGGCAGTGAGTGGTGATG
ATAGAGTTTAATTTTGCGCTAAAACATTGTCTAGACGCTGCACCCTTGGC
TTGTATGCTAAGAGACTGACGATATTGTCTCTGGCGTGAGGGACTGTCAT
GATAGCAAGGCGGCTCCAGTCCCAGCTAATTTTGTGGCTTGATTTACATA
AATATGTTGGACTCGCGGAAACGATACGTTGTCAAACAAATATATGCGAC
CCTCATTTTGTGATGCACCAACCGGCACAGGAGCCGCTCAAAAGCTGGGC
AAGTTCAAGAAGGGAGACAAGGTCACGCAGGACGGAAAGCGTGGAAATGT
CTAGGACTCGCCAGAGGAGCGAAGGAGATTTTACAAGATTGTGGGTTGTA
CAAGCTCCCCGGCGAAAGAAAGGCACCGAAGCTTGCGTGCAAAAGGTGAT
TTGTGGATGGTGGTGTCTGACAGGTATACTCAGTGGTTGATTGCTTCGCT
ATCCTGTGCTATTCTGAAAAAGGAAGGGTTTCGTCACCTTTAAAATGAAA
CTGGTGCCCGTTGTGATTTTTTTGCCAAGGTGTACCGCCGAGGCGAAAGC
CTTGGCGGAGCAGAAGAAACACTACAACGAGGGGGGGGAATCGCGGGCAT
CATCGCTGGTAGCTAGTGGTAATGAAGGGGGTGAGGATACGGAACCTGAT
CGGCAAGGGGAGGGTGATACTCGACGCTGTTGCCTCCGGTTCGTACTCAG
CAATCTGCCGGCATTCAAGGAACAGAAGAATCGCGTGGAGGAGGTTTTCG
AGGCAGCCGGACATCGGTGTATCTTCCTCCCAAAGTAAGTGTTTTCGCAT
AATATCGGTCATGAGGTATTTTCTGAAGTGGCACATGATTTTAACCGACT
TGTATACGAATAACTAAGAACACCGCTGCACGTCTCCGTGAATTTTCCTT
CTCCAGGTATCACCCGGAGTGCAACGCCATCGAGCGAGTCTGGGGGCACT
CTAAGGCCATCGAACGCCGGGTGTGCGATTATTCCATCAAGAGTCTTCTA
AAACGACTCCCTGCCACCCTTAGCTCCATGTCTCTGTCGCTCATTCGCAA
GTGGGCCCGGATTTCGTGGCTCTATGTTGAGGCGTATGCCACGGGGCTCG
ACGGTTACATGCAATACAGAGACCTAAAGAAGTGGACGTGCCACCGCTCA
TCTACTGATCGGGTCGATGCCGTGTTGATGGCAAAGAGCACGGCCGCATC
ACCCGAGGAGCGCAAGAAAAACGAGGAGAAGGCACTTGCAGCCTCGCGGG
AAGCCAGGATAGACTCTATGAAACACTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig134:435930..439757-

>mRNA_P-littoralis_Contig134.87.1 ID=mRNA_P-littoralis_Contig134.87.1|Name=mRNA_P-littoralis_Contig134.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig134:435930..439757- (Pylaiella littoralis U1_48)
CAGAAGTCCATCGTATCGTTCTTCTCTCCCGTCCCTGATCTTCTCCCCGT
TCCCACGACGGACTTCCCAGTCTTGCCTGCTCTCGCAGATGATGAAAGCG
GCGCAATTGGGACGGGACTGTCACCCATGGACTTCGAGATAGACAAAGAG
CACGGCCGCATCACCCGAGGAGCGCAAGAAAAACGAGGAGAAGGCACTTG
CAGCCTCGCGGGAAGCCAGGATAGACTCTATGAAACACTT
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