mRNA_P-littoralis_Contig1338.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1338.6.1
Unique NamemRNA_P-littoralis_Contig1338.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1338.6.1 vs. uniprot
Match: D7FVV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV8_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 2.720e-79
Identity = 181/290 (62.41%), Postives = 211/290 (72.76%), Query Frame = 1 
Query:   37 QDPATTAYLRAFQAVVAGNVQAMCEVQDPRESREEDKLFEDVIQGCDNVWAARARLAATRARVARLSVATCSDALRVSQAADDRACSVLEAITEHARMEKETGGPLPLAPGPSPAGTAANGSSGXXXXXXXAGSDGXXXXXXXXXXXXXXXXXXVVAVPTYAGVDASVLEPKVSMLIGKLSELPGPLKALLQEIPEVTASLSVTVQNVEAVMRTGNSRAEALLRKAPPTPLPGSKKKGKGXXXXXXXXXXVDDERPPPEELRSAAREARVEQAKKRWQAEGVGMVGGIFN 906
            QD ATTAYLRAFQA VA  V+ +CEVQD RESREED+L  ++ Q   ++ AAR+RL ATRARVARLS  TC DALRVS+AADDRAC+VLEA T HAR E ETGGPLPL                            XXXXXXXXXXXXXXXXXX      + G++  V+EPKVS LIGK++ELPGPLK++LQEIPE+TASL+V+VQ  EA ++ G SR EALL KAPPTPL   K KG  XXXXXXX   V+DER PPE+ R+AAREARV+QA+K W+A GVG+VGGIFN
Sbjct:   35 QDAATTAYLRAFQAAVADKVRDLCEVQDARESREEDELVGEIFQFSHDLRAARSRLYATRARVARLSADTCRDALRVSEAADDRACAVLEASTAHARRESETGGPLPLR----------------------IDDAAXXXXXXXXXXXXXXXXXXXXXXGIFQGLETGVVEPKVSALIGKMAELPGPLKSVLQEIPELTASLAVSVQEAEAAIKAGQSRTEALLGKAPPTPLSSKKGKGAXXXXXXXXANVVEDERYPPEDARAAAREARVQQARKEWEAIGVGVVGGIFN 302
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1338.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVV8_ECTSI2.720e-7962.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1338contigP-littoralis_Contig1338:30039..32098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2060
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002320.1
Cds size807
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789614.9180443-UTR-P-littoralis_Contig1338:30038..311891680789614.9180443-UTR-P-littoralis_Contig1338:30038..31189Pylaiella littoralis U1_48UTRP-littoralis_Contig1338 30039..31189 -
1680789614.936813-UTR-P-littoralis_Contig1338:31996..320981680789614.936813-UTR-P-littoralis_Contig1338:31996..32098Pylaiella littoralis U1_48UTRP-littoralis_Contig1338 31997..32098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789614.9278965-CDS-P-littoralis_Contig1338:31189..319961680789614.9278965-CDS-P-littoralis_Contig1338:31189..31996Pylaiella littoralis U1_48CDSP-littoralis_Contig1338 31190..31996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1338.6.1prot_P-littoralis_Contig1338.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1338 31190..31996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1338.6.1

>prot_P-littoralis_Contig1338.6.1 ID=prot_P-littoralis_Contig1338.6.1|Name=mRNA_P-littoralis_Contig1338.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=269bp
MCEVQDPRESREEDKLFEDVIQGCDNVWAARARLAATRARVARLSVATCS
DALRVSQAADDRACSVLEAITEHARMEKETGGPLPLAPGPSPAGTAANGS
SGSGNSSNGAGSDGGGGGGGGDHHSDNNAGGGVVAVPTYAGVDASVLEPK
VSMLIGKLSELPGPLKALLQEIPEVTASLSVTVQNVEAVMRTGNSRAEAL
LRKAPPTPLPGSKKKGKGAAAAAAGAGGVDDERPPPEELRSAAREARVEQ
AKKRWQAEGVGMVGGIFN*
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mRNA from alignment at P-littoralis_Contig1338:30039..32098-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1338.6.1 ID=mRNA_P-littoralis_Contig1338.6.1|Name=mRNA_P-littoralis_Contig1338.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2060bp|location=Sequence derived from alignment at P-littoralis_Contig1338:30039..32098- (Pylaiella littoralis U1_48)
GCAGCAGCAGCAGCAGCGGCAGTTGACCCAATTCTTCAAGACCCAGCGAC
AACGGCGTACCTCCGAGCGTTTCAGGCCGTCGTTGCCGGCAATGTGCAGG
CCATGTGCGAGGTACAAGACCCCCGCGAGTCCCGCGAGGAAGACAAGCTC
TTCGAGGACGTCATTCAAGGTTGCGACAACGTTTGGGCCGCCAGGGCCAG
GCTCGCCGCCACCCGAGCGCGCGTCGCCCGCCTCTCGGTCGCCACCTGCA
GCGACGCCCTCCGAGTCTCTCAGGCCGCCGACGACCGCGCCTGCTCCGTG
CTCGAGGCCATCACGGAGCACGCGCGGATGGAGAAGGAGACCGGCGGCCC
TCTTCCGCTAGCGCCTGGCCCCTCTCCTGCTGGTACTGCTGCTAATGGCA
GCAGTGGCAGTGGCAATAGCAGCAACGGCGCCGGCAGCGATGGCGGCGGC
GGCGGCGGCGGCGGCGATCACCACAGCGACAACAATGCCGGCGGTGGTGT
CGTGGCGGTGCCCACGTACGCCGGCGTCGATGCCAGCGTTTTGGAGCCGA
AGGTGTCGATGCTGATCGGAAAGCTGTCGGAGCTACCGGGCCCGCTCAAG
GCCCTGCTGCAGGAAATCCCCGAGGTGACGGCGTCACTGTCGGTGACGGT
GCAGAACGTGGAGGCCGTGATGAGGACCGGCAACAGTCGGGCGGAAGCCC
TGTTGCGCAAGGCGCCGCCGACGCCGCTGCCCGGTAGTAAGAAGAAGGGC
AAAGGGGCGGCGGCGGCGGCGGCGGGGGCGGGTGGGGTGGACGATGAGCG
ACCTCCGCCCGAGGAGTTGCGGTCGGCGGCGCGGGAGGCGAGGGTGGAGC
AAGCGAAGAAGCGGTGGCAGGCGGAGGGAGTTGGCATGGTCGGAGGTATC
TTCAACTGATCTATCTGATAGACGGTTTCTTACCTTCCGGCGGGAGCTTG
GTGGCTTACGTGCTGTTGGTGGGTCGGACGGTCTAGTTCGCCATTTGCCC
TTCACGACTGTAAACTCTGTGTTTGTGTCCTGTTGTACTCTTTGGCTGCC
GTGCTCTGTGCGGCCTATTTAATTCAGCGTCGTCATGTTCTTCAATGTAG
TACGAGTATTTTAGCTGTACCCCAAAAGCTGCAGATGTCCGCACTTGTTT
GGCGGGAGAAGGGCGTAGGTTCCTCCGACTTGGCCATAGGAAGTACACAA
ACAAGCTAGGCAACTGTGTCGTCGCATATTCAGTTCGAAAAAGCCTACGG
TCGTCGACGCATCAGTTTGGGTTGGTACAGCAGCACAGACAGGTTGTTTT
TAGGCAGCAGCTTGTTGGGGGACTTTTGGTGACAAGCCGCGTAATACGCC
TCGCTGGGCTTGGTTCATCCCTTGTCGATGAGTGAAGCAGGCGTGCGAAA
AAACGAGTGCGGTGAGCGTGACAGTCTCGAGTCCCCGACGTTGTGCCGTT
CACTTCTTTTGTGTGTCAAGACGCCTGTACACTTTCTGCTCAGCAACGGT
TGTGGCGACGTAACCGGTTGTCGAGTGCGCATACAGCGTAACACAAAATA
GAGCTGTGAACGTTCCCCGATGTCCACTGCAGCTAATTGTGGTCCGGGTA
TTTGTGTTGAACGATCTAAGGACACTTTCAACAGGAGCACACCAACACCT
GCAGCTTATTACGATACTGTAGCAAGTTTTTTTTGCGGATCAGTCACATG
TCCTTTACGTGTGGCCATGTGTGTATGTTGTATATTATGTGTGCATGCCA
CCGTTGTGAGGAGTCTTAGATGCAGTGTTTGATCTGCAAACGGTCACTAT
ATGTTTCAACGGATCGACGTGTCAAATGTTAAAAAAAATGGTGAACGATT
TCTGTTTTTGGTCGCCTGGCCAATGACGCCACCTCCTTAGTCTCGGCGGA
ACACCGCTCATCACTTCAGAAACAAACAATGTCATCTCGAGGCAGGTTAC
TTGGAATTTCAGCGTGGGCTTGTAGTTTGGGGAAGCCAAGGGAACAGGCA
ATCATGTAAGCGTCGTCGTGGGCGATCATTTTTGGGCCAGTCTCTTTCAG
GCTTTCTTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1338:30039..32098-

>mRNA_P-littoralis_Contig1338.6.1 ID=mRNA_P-littoralis_Contig1338.6.1|Name=mRNA_P-littoralis_Contig1338.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=807bp|location=Sequence derived from alignment at P-littoralis_Contig1338:30039..32098- (Pylaiella littoralis U1_48)
ATGTGCGAGGTACAAGACCCCCGCGAGTCCCGCGAGGAAGACAAGCTCTT
CGAGGACGTCATTCAAGGTTGCGACAACGTTTGGGCCGCCAGGGCCAGGC
TCGCCGCCACCCGAGCGCGCGTCGCCCGCCTCTCGGTCGCCACCTGCAGC
GACGCCCTCCGAGTCTCTCAGGCCGCCGACGACCGCGCCTGCTCCGTGCT
CGAGGCCATCACGGAGCACGCGCGGATGGAGAAGGAGACCGGCGGCCCTC
TTCCGCTAGCGCCTGGCCCCTCTCCTGCTGGTACTGCTGCTAATGGCAGC
AGTGGCAGTGGCAATAGCAGCAACGGCGCCGGCAGCGATGGCGGCGGCGG
CGGCGGCGGCGGCGATCACCACAGCGACAACAATGCCGGCGGTGGTGTCG
TGGCGGTGCCCACGTACGCCGGCGTCGATGCCAGCGTTTTGGAGCCGAAG
GTGTCGATGCTGATCGGAAAGCTGTCGGAGCTACCGGGCCCGCTCAAGGC
CCTGCTGCAGGAAATCCCCGAGGTGACGGCGTCACTGTCGGTGACGGTGC
AGAACGTGGAGGCCGTGATGAGGACCGGCAACAGTCGGGCGGAAGCCCTG
TTGCGCAAGGCGCCGCCGACGCCGCTGCCCGGTAGTAAGAAGAAGGGCAA
AGGGGCGGCGGCGGCGGCGGCGGGGGCGGGTGGGGTGGACGATGAGCGAC
CTCCGCCCGAGGAGTTGCGGTCGGCGGCGCGGGAGGCGAGGGTGGAGCAA
GCGAAGAAGCGGTGGCAGGCGGAGGGAGTTGGCATGGTCGGAGGTATCTT
CAACTGA
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