mRNA_P-littoralis_Contig1338.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1338.4.1
Unique NamemRNA_P-littoralis_Contig1338.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1338.4.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.170e-63
Identity = 112/153 (73.20%), Postives = 126/153 (82.35%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTTKALEDNEGAMALIQNPLSCGRSKHIDVRFHFIRELFRSWAISVEHVRTEEQHAGVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG V+SH S TQ IVS SS E+EYIAAGEGV+EALFVR VLSFIAPETSGS+ + LEDN+GAMAL+QNPLS  RSKHIDVR+HFIR LFRS  IS++ V T EQHA VLTKA S+   +YHR+ LMNLPE
Sbjct:  230 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFVSTSEQHADVLTKAHSKSSLQYHRRKLMNLPE 381
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BLAST of mRNA_P-littoralis_Contig1338.4.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.740e-62
Identity = 100/152 (65.79%), Postives = 120/152 (78.95%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTTKALEDNEGAMALIQNPLSCGRSKHIDVRFHFIRELFRSWAISVEHVRTEEQHAGVLTKALSRDLFRYHRKALMNLP 457
            +VD+SYAD   DRRS +G+A  VGG VV   + TQP+ + S+ E+EYIAAGEGV+EALFVR VLSFIAPETSG+T +  EDNEGA+AL+QNP S  RSKHIDVRFHFIRELF++  I+ ++V TEEQHA +LTK L R    YHRKALMNLP
Sbjct:   60 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNLP 211
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BLAST of mRNA_P-littoralis_Contig1338.4.1 vs. uniprot
Match: A0A6H5KGI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI0_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 2.990e-62
Identity = 110/153 (71.90%), Postives = 127/153 (83.01%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTTKALEDNEGAMALIQNPLSCGRSKHIDVRFHFIRELFRSWAISVEHVRTEEQHAGVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   D+RSV+G+AT VGG VVSH S TQ I+S SS E+EYIAAGEGV+EALFVR VLSF+APETSGS+ K LEDN+GA+AL+QNPLS GR+KHIDVR+HFI  LFRS  ISV+ V T EQHA +LTKALSR   +YHR+ LMNLPE
Sbjct:  235 YVDASYADTE-DKRSVTGMATTVGGTVVSHGSKTQSILSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIHGLFRSGDISVKFVPTTEQHADLLTKALSRANLQYHRRKLMNLPE 386
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BLAST of mRNA_P-littoralis_Contig1338.4.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 5.330e-62
Identity = 112/153 (73.20%), Postives = 127/153 (83.01%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTTKALEDNEGAMALIQNPLSCGRSKHIDVRFHFIRELFRSWAISVEHVRTEEQHAGVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG V+SH S TQ IVS SS E+EYIAAGEGV+EALFVR VLSFIAPETSGS+ + LEDN+GAMAL+QNPLS  RSKHIDVR+HFIR LFRS  IS++ V T EQHA +LTKALS+   +YHR+ LMNLPE
Sbjct:  445 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 596
[Close]
BLAST of mRNA_P-littoralis_Contig1338.4.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 8.020e-62
Identity = 107/152 (70.39%), Postives = 123/152 (80.92%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTTKALEDNEGAMALIQNPLSCGRSKHIDVRFHFIRELFRSWAISVEHVRTEEQHAGVLTKALSRDLFRYHRKALMNLP 457
            YVDASYAD    RRSV+GIA  VGG VVSH S TQ IVS S++E+EYIAAGEGV+EALFVR VLSFIAPETSG+  K LEDN+GA++L+QNP S  RSKHIDVRFHFIRELF+S  ISVE++ T+EQHA +LTKAL R     HR ALMN+P
Sbjct:  219 YVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNIP 370
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BLAST of mRNA_P-littoralis_Contig1338.4.1 vs. uniprot
Match: A0A6H5KQ05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ05_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 9.700e-61
Identity = 109/153 (71.24%), Postives = 127/153 (83.01%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTTKALEDNEGAMALIQNPLSCGRSKHIDVRFHFIRELFRSWAISVEHVRTEEQHAGVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG V+SH S+TQ IVS SS E+EYIAAGEGV+EALFVR VLSF+ PETSGS+ + L+DN+GA+AL+QNPL  GR+KHIDVR+HFIR LFRS  ISV+ V T EQHA +LTKALSR   +YHR+ LMNLPE
Sbjct:  352 YVDASYADTE-DRRSVSGLATTVGGTVISHGSNTQSIVSVSSTEAEYIAAGEGVKEALFVRAVLSFVPPETSGSSIEVLDDNQGAIALVQNPLRSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 503
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BLAST of mRNA_P-littoralis_Contig1338.4.1 vs. uniprot
Match: A0A6H5JQH8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH8_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 9.860e-61
Identity = 107/153 (69.93%), Postives = 123/153 (80.39%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTTKALEDNEGAMALIQNPLSCGRSKHIDVRFHFIRELFRSWAISVEHVRTEEQHAGVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRS+SG+AT VGG VVSH S TQ IVS SS E+EYIAAGEGV+EALFVR VLSF+APE SGS+ + LE N+GA+AL+QNPLS GR+KHIDVRFHFIR LFR   I+V+ V T EQHA +LTK LSR   +YHR+ LM LPE
Sbjct:  101 YVDASYADTK-DRRSMSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRDVLSFVAPEPSGSSIQVLEGNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRPGDIAVKFVPTTEQHADLLTKGLSRASLQYHRRKLMILPE 252
[Close]
BLAST of mRNA_P-littoralis_Contig1338.4.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.680e-60
Identity = 107/153 (69.93%), Postives = 123/153 (80.39%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTTKALEDNEGAMALIQNPLSCGRSKHIDVRFHFIRELFRSWAISVEHVRTEEQHAGVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG VVSH S TQ IVS S+ E+EYIAA +GV+EALFVR V SF+ PETSGS+ + LEDN+GA+AL+QNPLS GR+KHIDVRFHFIR LFRS  ISV+ V T EQHA +LTKALSR   +YHR+   NLPE
Sbjct:  107 YVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYIAAEDGVKEALFVRAVQSFVVPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRASLQYHRRKPTNLPE 258
[Close]
BLAST of mRNA_P-littoralis_Contig1338.4.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.780e-60
Identity = 113/153 (73.86%), Postives = 128/153 (83.66%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTTKALEDNEGAMALIQNPLSCGRSKHIDVRFHFIRELFRSWAISVEHVRTEEQHAGVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG VVSH S TQ +VS SS E+EYIAAGEGV+EALFVR VLSF+APETSGS+ K LEDN+GA+AL+QNPLS GR+KHIDVR+HFIR LFRS  ISV+ V T EQHA +LTKALSR   +YHR+ LMNLPE
Sbjct:  704 YVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSMVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 855
[Close]
BLAST of mRNA_P-littoralis_Contig1338.4.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 2.440e-60
Identity = 113/153 (73.86%), Postives = 128/153 (83.66%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPETSGSTTKALEDNEGAMALIQNPLSCGRSKHIDVRFHFIRELFRSWAISVEHVRTEEQHAGVLTKALSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG VVSH S TQ IVS SS E+EYIAAGEGV+EALFVR VLSF+APETSGS+ + LEDN+GA+AL+QNPLS GR+KHIDVR+HFIR LFRS  ISV+ V T EQHA +LTKALSR   +YHR+ LMNLPE
Sbjct:  703 YVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 854
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1338.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L589_9PHAE1.170e-6373.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR64_9PHAE1.740e-6265.79Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGI0_9PHAE2.990e-6271.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGX6_9PHAE5.330e-6273.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE8.020e-6270.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQ05_9PHAE9.700e-6171.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQH8_9PHAE9.860e-6169.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPN5_9PHAE1.680e-6069.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU90_9PHAE1.780e-6073.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGN1_9PHAE2.440e-6073.86Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1338contigP-littoralis_Contig1338:25195..25693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3641.EOY12702
PFAMsLRR_8,NB-ARC,Pkinase_Tyr
Model size499
Max annot lvl33090|Viridiplantae
KEGG koko:K13459
KEGG Pathwayko04626,map04626
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0016020,GO:0023052,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071944
Exons1
Evalue8.09e-20
EggNOG OGsCOG2801@1|root,KOG4658@1|root,KOG0017@2759|Eukaryota,KOG4658@2759|Eukaryota,37T06@33090|Viridiplantae
DescriptionBelongs to the disease resistance NB-LRR family
Cds size399
COG categoryT
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789614.8631244-UTR-P-littoralis_Contig1338:25194..252581680789614.8631244-UTR-P-littoralis_Contig1338:25194..25258Pylaiella littoralis U1_48UTRP-littoralis_Contig1338 25195..25258 +
1680789614.8828702-UTR-P-littoralis_Contig1338:25657..256931680789614.8828702-UTR-P-littoralis_Contig1338:25657..25693Pylaiella littoralis U1_48UTRP-littoralis_Contig1338 25658..25693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789614.8736267-CDS-P-littoralis_Contig1338:25258..256571680789614.8736267-CDS-P-littoralis_Contig1338:25258..25657Pylaiella littoralis U1_48CDSP-littoralis_Contig1338 25259..25657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1338.4.1prot_P-littoralis_Contig1338.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1338 25259..25657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1338.4.1

>prot_P-littoralis_Contig1338.4.1 ID=prot_P-littoralis_Contig1338.4.1|Name=mRNA_P-littoralis_Contig1338.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MVGGAVVSHKSSTQPIVSNSSAESEYIAAGEGVREALFVRHVLSFIAPET
SGSTTKALEDNEGAMALIQNPLSCGRSKHIDVRFHFIRELFRSWAISVEH
VRTEEQHAGVLTKALSRDLFRYHRKALMNLPE*
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mRNA from alignment at P-littoralis_Contig1338:25195..25693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1338.4.1 ID=mRNA_P-littoralis_Contig1338.4.1|Name=mRNA_P-littoralis_Contig1338.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=499bp|location=Sequence derived from alignment at P-littoralis_Contig1338:25195..25693+ (Pylaiella littoralis U1_48)
GTACGTCGACGCGAGCTACGCCGACGACCCGGCTGATAGACGTTCGGTCT
CCGGGATAGCAACCATGGTCGGTGGGGCTGTTGTTAGCCACAAAAGTTCA
ACGCAGCCGATAGTTTCGAACTCCTCAGCAGAGTCAGAGTACATTGCGGC
TGGGGAGGGCGTGAGAGAGGCGTTGTTTGTGCGGCATGTGCTTTCGTTTA
TTGCGCCGGAGACGAGTGGTAGCACAACCAAGGCCCTTGAGGACAACGAG
GGGGCTATGGCGCTGATTCAGAACCCTCTCAGCTGTGGCCGTAGCAAACA
CATAGACGTGCGCTTCCATTTTATTCGGGAGTTGTTTAGATCGTGGGCCA
TCTCGGTCGAGCACGTCAGGACGGAGGAACAGCACGCCGGCGTTCTCACC
AAGGCGCTGAGCCGGGACTTGTTCCGGTACCACCGGAAAGCATTGATGAA
TTTGCCGGAGTAGGCGACTGTTTTCCCGTCTTTGTTTTGAGCACAGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1338:25195..25693+

>mRNA_P-littoralis_Contig1338.4.1 ID=mRNA_P-littoralis_Contig1338.4.1|Name=mRNA_P-littoralis_Contig1338.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig1338:25195..25693+ (Pylaiella littoralis U1_48)
ATGGTCGGTGGGGCTGTTGTTAGCCACAAAAGTTCAACGCAGCCGATAGT
TTCGAACTCCTCAGCAGAGTCAGAGTACATTGCGGCTGGGGAGGGCGTGA
GAGAGGCGTTGTTTGTGCGGCATGTGCTTTCGTTTATTGCGCCGGAGACG
AGTGGTAGCACAACCAAGGCCCTTGAGGACAACGAGGGGGCTATGGCGCT
GATTCAGAACCCTCTCAGCTGTGGCCGTAGCAAACACATAGACGTGCGCT
TCCATTTTATTCGGGAGTTGTTTAGATCGTGGGCCATCTCGGTCGAGCAC
GTCAGGACGGAGGAACAGCACGCCGGCGTTCTCACCAAGGCGCTGAGCCG
GGACTTGTTCCGGTACCACCGGAAAGCATTGATGAATTTGCCGGAGTAG
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