mRNA_P-littoralis_Contig1338.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1338.3.1
Unique NamemRNA_P-littoralis_Contig1338.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1338.3.1 vs. uniprot
Match: A0A6H5KYG4_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYG4_9PHAE)

HSP 1 Score: 490 bits (1262), Expect = 1.010e-165
Identity = 241/280 (86.07%), Postives = 256/280 (91.43%), Query Frame = 1
Query:  103 MLRPTCIALLARQAVGFSPNLSSIVGANGIGMDNR-ARNPATATRPAGSVAALSASAGKVNAEEVLKSPKWPEKWPFYEDDFNRMDESSDGDFYSQPRLVYHIDDGAVGALTKYYSKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNQYELSKNVQLDEYKVKDLNVDPKFPFEDASFDVVTCVVSVDYLNKPLEVFEEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPASHDISPNPGRSDPMYIVEGRKSA 939
            MLR T + LLAR AVGFSPNLSSIVG +G GM  R +RN  +ATRPAGS A    ++G V+AE+VLK+PKWPEKWPFYEDDF+RMDESSDGDFYSQPRLVYHIDD AV ALTKYY+KALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMN++ELSKNVQLDEY+VKDLNVD KFPF+D SFDVVTCVVSVDYLNKPLEVF EIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPP SHDISPNPGRSDPMYIVEGRK A
Sbjct:    1 MLRSTFVVLLARNAVGFSPNLSSIVGFDG-GMGARNSRNFVSATRPAGSTALF--ASGGVSAEDVLKAPKWPEKWPFYEDDFSRMDESSDGDFYSQPRLVYHIDDSAVKALTKYYTKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNEFELSKNVQLDEYRVKDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPVSHDISPNPGRSDPMYIVEGRKKA 277          
BLAST of mRNA_P-littoralis_Contig1338.3.1 vs. uniprot
Match: A0A6V1S5I5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S5I5_HETAK)

HSP 1 Score: 360 bits (924), Expect = 2.980e-115
Identity = 159/221 (71.95%), Postives = 190/221 (85.97%), Query Frame = 1
Query:  271 GKVNAEEVLKSPKWPEKWPFYEDDFNRMDESSDGDFYSQPRLVYHIDDGAVGALTKYYSKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNQYELSKNVQLDEYKVKDLNVDPKFPFEDASFDVVTCVVSVDYLNKPLEVFEEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPASHDISPNPGRSDPMYIVEGRK 933
            G + AE++LK+PKWP +WPF +DDF RMDE  D  FY   RLVYHIDD AVGALT++Y +  P+GADVLDICSSWVSHFP+ W+HG+R+G GMN+YELSKN QLD+Y V+DLNV P+ P+ED SFD+VTCVVSVDYLN+PL +F+E+RRVLRPGG+A+MSMSNRCFPTKAI IW QTND+EH+FIVGSYFHYAGGF+ P + DISPNPGRSDPMYIV+  K
Sbjct:   44 GGIKAEDILKAPKWPAEWPFTKDDFKRMDEEEDTVFYQDARLVYHIDDPAVGALTRFYKETFPEGADVLDICSSWVSHFPEGWKHGRRSGTGMNEYELSKNPQLDDYFVRDLNVRPELPYEDESFDLVTCVVSVDYLNQPLAIFDEVRRVLRPGGRAVMSMSNRCFPTKAINIWLQTNDLEHLFIVGSYFHYAGGFNAPEALDISPNPGRSDPMYIVQATK 264          
BLAST of mRNA_P-littoralis_Contig1338.3.1 vs. uniprot
Match: A0A835Z0P5_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0P5_9STRA)

HSP 1 Score: 332 bits (851), Expect = 1.980e-104
Identity = 166/272 (61.03%), Postives = 197/272 (72.43%), Query Frame = 1
Query:  115 TCIALLAR--QAVGFSPNLSSIVGANGIGMDNRARNPATATRPAGSVAALSASAGKVNAEEVLKSPKWPEKWPFYEDDFNRMDESSDGDFYSQPRLVYHIDDGAVGALTKYYSKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNQYELSKNVQLDEYKVKDLNVDPKFPFEDASFDVVTCVVSVDYLNKPLEVFEEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPASHDISPNPGRSDPMYIVE 924
            T +A LA   +A  F  N SS    + +   NR R+ A  T   G              E+VLK+PKWPE++PF   DF R DES D +FY  PRLV HIDD AV ALT+YYSK LP+GADVLDICSSWVSHFP++W+HGKR GLGMN+YELS+N QLDEY V+DLNV+P FPF D+SFDV+TCVVS+DYL    +VF E  RVLRP GK I+SMSNRCFPTKA ++W  TND EH+FIVG++FHY+G F P  +HDISPNP RSDPMYIVE
Sbjct:    6 TVVAALATAGKAHSFVSNSSSGARPSILRTSNRMRSGAALTMGLG-------------IEDVLKNPKWPEQYPFKPADFKRQDESVDTEFYEYPRLVLHIDDAAVKALTEYYSKTLPEGADVLDICSSWVSHFPQNWKHGKRVGLGMNEYELSQNKQLDEYVVRDLNVNPAFPFPDSSFDVITCVVSIDYLVTLDKVFAEAARVLRPNGKFIISMSNRCFPTKAWKLWLSTNDFEHVFIVGAFFHYSGAFQPAQAHDISPNPSRSDPMYIVE 264          
BLAST of mRNA_P-littoralis_Contig1338.3.1 vs. uniprot
Match: A0A1E7ELA4_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ELA4_9STRA)

HSP 1 Score: 325 bits (834), Expect = 1.560e-102
Identity = 151/216 (69.91%), Postives = 183/216 (84.72%), Query Frame = 1
Query:  283 AEEVLKSPKWPEKWPFYED-DFNRMDESSDGDFYSQPRLVYHIDDGAVGALTKYYSKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNQYELSKNVQLDEYKVKDLNVDPKFPFEDASFDVVTCVVSVDYLNKPLEVFEEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPASHDISPNPGRSDPMYIVEG 927
            AE+VL++PK+P++WP+ +D DF+R DES D  FY  PRL YHIDD AV ALTKYYS+ L +G DVLDICSSWVSH+PKD++ GK  GLGMN+YELS+N QL ++ VKDLN DP FPFED+SFD VTCVVSVDYLNKPL+VF+EI RVLRPGG+ ++SMSNRCFPTKA +IW QT+D+EHIFI GS+FHY+  FD P+  DISPNPGRSDP+YIV+G
Sbjct:    9 AEKVLENPKFPDEWPYSDDTDFSRQDESKDTIFYDTPRLCYHIDDDAVSALTKYYSENLKEGDDVLDICSSWVSHYPKDFKGGKVVGLGMNEYELSQNPQLTDFVVKDLNADPVFPFEDSSFDKVTCVVSVDYLNKPLQVFKEIGRVLRPGGECLISMSNRCFPTKAFKIWLQTSDLEHIFITGSFFHYSDLFDVPSCSDISPNPGRSDPLYIVKG 224          
BLAST of mRNA_P-littoralis_Contig1338.3.1 vs. uniprot
Match: B5Y3G7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3G7_PHATC)

HSP 1 Score: 325 bits (832), Expect = 3.190e-102
Identity = 147/216 (68.06%), Postives = 174/216 (80.56%), Query Frame = 1
Query:  286 EEVLKSPKWPEKWPFYEDDFNRMDESSDGDFYSQPRLVYHIDDGAVGALTKYYSKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNQYELSKNVQLDEYKVKDLNVDPKFPFEDASFDVVTCVVSVDYLNKPLEVFEEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPASHDISPNPGRSDPMYIVEGRK 933
            E+VL++PKWP +WP+  +DF R DES D  FY  PRLVYHIDD AVGALT+YY++    G DVLDICSSWV H+P  W+ GK  GLGMN+YELS+N  LD Y VKDLN +P  PF+D SFD VTCVVSVDYLNKPLEVF+EI RVLRPGG+ I+SMSNRCFPTKA +IW QT+D+EH+FI GS+FHYA  FDPP+  DISPNPGRSDP++IV+  K
Sbjct:   12 EKVLQNPKWPPEWPYSAEDFARQDESDDELFYESPRLVYHIDDAAVGALTQYYAEEFKDGDDVLDICSSWVCHYPNQWKGGKVVGLGMNEYELSQNPVLDSYVVKDLNKEPTIPFDDNSFDKVTCVVSVDYLNKPLEVFQEIGRVLRPGGECILSMSNRCFPTKAFRIWLQTSDLEHVFIAGSFFHYAEKFDPPSGKDISPNPGRSDPLFIVKAAK 227          
BLAST of mRNA_P-littoralis_Contig1338.3.1 vs. uniprot
Match: B8C942_THAPS (Methyltransf_11 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C942_THAPS)

HSP 1 Score: 324 bits (831), Expect = 3.770e-102
Identity = 149/219 (68.04%), Postives = 175/219 (79.91%), Query Frame = 1
Query:  283 AEEVLKSPKWPEKWPFYEDDFNRMDESSDGDFYSQPRLVYHIDDGAVGALTKYYSKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNQYELSKNVQLDEYKVKDLNVDPKFPFEDASFDVVTCVVSVDYLNKPLEVFEEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPASHDISPNPGRSDPMYIVEGRKSA 939
            AE+VL +PK+P +WP+   DF R DES DG FY QPRLVYHIDD AV ALT+YY+ A  +G DVLDICSSWVSHFPK+W+ G   GLGMN+YELS+N QL  + VKDLN DP FPF D  FD VTCVVSVDYLN+P ++F+EI RVLRPGG+ I+SMSNRCFPTKA +IW QTND+EHIFIVGS+FHYAG FD     DISPNPGRSDP++IV+  K +
Sbjct:    5 AEKVLTNPKFPPQWPYSPSDFQRSDESDDGIFYDQPRLVYHIDDSAVSALTQYYTDAFNEGEDVLDICSSWVSHFPKEWKGGNVVGLGMNEYELSQNEQLSSFVVKDLNKDPTFPFGDEEFDKVTCVVSVDYLNQPEKIFKEIARVLRPGGECIISMSNRCFPTKAFRIWLQTNDLEHIFIVGSFFHYAGQFDAATCEDISPNPGRSDPLFIVKAAKKS 223          
BLAST of mRNA_P-littoralis_Contig1338.3.1 vs. uniprot
Match: A0A7S2SKG7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SKG7_9STRA)

HSP 1 Score: 322 bits (825), Expect = 2.290e-100
Identity = 145/217 (66.82%), Postives = 175/217 (80.65%), Query Frame = 1
Query:  286 EEVLKSPKWPEKWPFYEDDFNRMDESSDGDFYSQPRLVYHIDDGAVGALTKYYSKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNQYELSKNVQLDEYKVKDLNVDPKFPFEDASFDVVTCVVSVDYLNKPLEVFEEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPASHDISPNPGRSDPMYIVEGRKS 936
            E+VL++PKWP  WP+ ++DF+RMDES D  FY  PRLVYHIDD AVGALT+YY + +  G DVLDICSSWVSH+PK ++ G   GLGMN+YELS+N QL  + VKDLN DP FPF+D+SFD VTCVVSVDYLNKP E+F EI RVLRPGG  ++SMSNRCFPTKA +IW  TND+EHIFIVGS+F Y G F PP+  DISPNPGRSDP++I++  K+
Sbjct:   68 EKVLQNPKWPPSWPYSDEDFSRMDESDDSVFYESPRLVYHIDDPAVGALTEYYKENIKDGEDVLDICSSWVSHYPKHFKGGNVVGLGMNEYELSQNKQLSSFVVKDLNEDPVFPFDDSSFDKVTCVVSVDYLNKPKEIFNEIGRVLRPGGTCLLSMSNRCFPTKAFRIWLNTNDLEHIFIVGSFFQYTGLFGPPSCDDISPNPGRSDPLFIIKATKN 284          
BLAST of mRNA_P-littoralis_Contig1338.3.1 vs. uniprot
Match: L1JA50_GUITC (Methyltransf_11 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JA50_GUITC)

HSP 1 Score: 320 bits (819), Expect = 2.750e-100
Identity = 148/226 (65.49%), Postives = 180/226 (79.65%), Query Frame = 1
Query:  274 KVNAEEVLKSPKWPEKWPFYEDDFNRMDESSDGDFYSQPRLVYHIDDGAVGALTKYYSKALPKGADVLDICSSWVSHFPKDWEH--GKRTGLGMNQYELSKNVQLDEYKVKDLNVDPKFPFEDASFDVVTCVVSVDYLNKPLEVFEEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPASHDISPNPG----RSDPMYIVEGRK 933
            +V+ E+VLK+PKWP+ WP+   DF+R DES D  FY  PRLVYHIDD A+ ALT YY+K +P+ +D+LDICSSWVSHFPKD+    GKR GLGMNQ+ELSKN QL E+ V++LN +PKFPF D SFDVVTCVVSVDYL KPLE+F+E+ RVLRPGG+ I+S SNRCFP+KAI+IW  TND+EHIFI+GSYFHYAGGF+P  + DISP        SDPMYI++  K
Sbjct:    2 RVSVEDVLKNPKWPQSWPYSSKDFSRTDESEDEYFYDTPRLVYHIDDKAIAALTDYYAKTIPEKSDILDICSSWVSHFPKDFPQKMGKRVGLGMNQFELSKNEQLSEFVVQNLNKNPKFPFPDNSFDVVTCVVSVDYLIKPLEIFQEVSRVLRPGGRFIISQSNRCFPSKAIRIWLDTNDLEHIFIIGSYFHYAGGFNPAQAFDISPKKSIFSPPSDPMYIIQAEK 227          
BLAST of mRNA_P-littoralis_Contig1338.3.1 vs. uniprot
Match: A0A1Z5JF71_FISSO (Methyltransf_11 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JF71_FISSO)

HSP 1 Score: 318 bits (814), Expect = 5.020e-99
Identity = 150/221 (67.87%), Postives = 185/221 (83.71%), Query Frame = 1
Query:  283 AEEVLKSPKWPEKWPFYED--DFNRMDESSDGDFYSQPRLVYHIDDGAVGALTKYYSKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMNQYELSKNVQLDEYKVKDLNVDPKFPFEDASFDVVTCVVSVDYLNKPLEVFEEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPASHDISPNPGRSDPMYIVEGRKSA 939
            AE+VL +PKWP  WP Y+D  DF  MD S D  FYSQPRLVYHIDD AV ALT++Y+ +L +G DVLDICSSWVSH+PK+++ GK  GLGMN++ELSKN QL +Y V++LN +PKFPF+DASFD VTCVVS+DYL +PLEV +EI RVLRPGG+AI+S+SNRCFPTKA+QIW QT+D+EHIFIVGS+FHYAG FDPP   D SPNPGRSDP++I+  ++S+
Sbjct:   45 AEKVLANPKWPASWP-YDDKVDFAVMDPSEDEIFYSQPRLVYHIDDAAVLALTEHYATSLEEGDDVLDICSSWVSHYPKNFKGGKVVGLGMNEFELSKNPQLTDYVVQNLNKNPKFPFDDASFDKVTCVVSIDYLTQPLEVVKEIGRVLRPGGEAIISISNRCFPTKAMQIWLQTSDLEHIFIVGSFFHYAGCFDPPKCTDASPNPGRSDPLFIITAKRSS 264          
BLAST of mRNA_P-littoralis_Contig1338.3.1 vs. uniprot
Match: A0A7S0E449_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E449_9CRYP)

HSP 1 Score: 316 bits (809), Expect = 8.090e-98
Identity = 146/232 (62.93%), Postives = 183/232 (78.88%), Query Frame = 1
Query:  256 LSASAGKVNAEEVLKSPKWPEKWPFYEDDFNRMDESSDGDFYSQPRLVYHIDDGAVGALTKYYSKALPKGADVLDICSSWVSHFPKDWEH--GKRTGLGMNQYELSKNVQLDEYKVKDLNVDPKFPFEDASFDVVTCVVSVDYLNKPLEVFEEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAGGFDPPASHDISPNPG----RSDPMYIVEGRK 933
            +S S  +++ E+VLK+PKWPE WP+   DF+R DES D  FY  PRLVYHIDD A+GALT+YY K +P+ +D+LDICSSWVSHFPKD+    GKR GLGMN++ELSKN QL E+ V++LN + KFPF D SFDVVTCVVSVDYL +PL++F+E+ RVLRPGG+ I+S SNRCFP+KAI+IW  TND+EHIFI+GSYFHYAGGF+P  + DI+P        SDPMYI++  K
Sbjct:   63 ISMSGQRISVEDVLKNPKWPESWPYSPRDFSRTDESEDEYFYDTPRLVYHIDDKAIGALTEYYGKTIPEKSDILDICSSWVSHFPKDFPQKMGKRVGLGMNEFELSKNEQLSEFVVQNLNKNTKFPFPDNSFDVVTCVVSVDYLIQPLQIFQEVARVLRPGGRFIVSQSNRCFPSKAIRIWLDTNDLEHIFIIGSYFHYAGGFNPAQAFDITPKRSIFSPPSDPMYIIQAEK 294          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1338.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYG4_9PHAE1.010e-16586.07Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A6V1S5I5_HETAK2.980e-11571.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z0P5_9STRA1.980e-10461.03S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A1E7ELA4_9STRA1.560e-10269.91S-adenosyl-L-methionine-dependent methyltransferas... [more]
B5Y3G7_PHATC3.190e-10268.06Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
B8C942_THAPS3.770e-10268.04Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A7S2SKG7_9STRA2.290e-10066.82Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
L1JA50_GUITC2.750e-10065.49Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A1Z5JF71_FISSO5.020e-9967.87Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A7S0E449_9CRYP8.090e-9862.93Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1338contigP-littoralis_Contig1338:9201..18343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVV9
PFAMsMethyltransf_11
Model size2511
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons6
Evalue7.19e-174
EggNOG OGs28JTZ@1|root,2QS7X@2759|Eukaryota
Ec32 ortholog descriptionMethyltransferase type 11
Ec32 orthologEc-01_002330.1
DescriptionMethyltransferase domain
Cds size840
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1338.3.1prot_P-littoralis_Contig1338.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1338 10770..18241 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789614.7461438-UTR-P-littoralis_Contig1338:9200..107691680789614.7461438-UTR-P-littoralis_Contig1338:9200..10769Pylaiella littoralis U1_48UTRP-littoralis_Contig1338 9201..10769 -
1680789614.8276744-UTR-P-littoralis_Contig1338:18241..183431680789614.8276744-UTR-P-littoralis_Contig1338:18241..18343Pylaiella littoralis U1_48UTRP-littoralis_Contig1338 18242..18343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789614.7559266-CDS-P-littoralis_Contig1338:10769..108821680789614.7559266-CDS-P-littoralis_Contig1338:10769..10882Pylaiella littoralis U1_48CDSP-littoralis_Contig1338 10770..10882 -
1680789614.766124-CDS-P-littoralis_Contig1338:11978..120461680789614.766124-CDS-P-littoralis_Contig1338:11978..12046Pylaiella littoralis U1_48CDSP-littoralis_Contig1338 11979..12046 -
1680789614.774969-CDS-P-littoralis_Contig1338:12549..127711680789614.774969-CDS-P-littoralis_Contig1338:12549..12771Pylaiella littoralis U1_48CDSP-littoralis_Contig1338 12550..12771 -
1680789614.7895753-CDS-P-littoralis_Contig1338:13703..138331680789614.7895753-CDS-P-littoralis_Contig1338:13703..13833Pylaiella littoralis U1_48CDSP-littoralis_Contig1338 13704..13833 -
1680789614.803911-CDS-P-littoralis_Contig1338:14816..149531680789614.803911-CDS-P-littoralis_Contig1338:14816..14953Pylaiella littoralis U1_48CDSP-littoralis_Contig1338 14817..14953 -
1680789614.8166928-CDS-P-littoralis_Contig1338:18071..182411680789614.8166928-CDS-P-littoralis_Contig1338:18071..18241Pylaiella littoralis U1_48CDSP-littoralis_Contig1338 18072..18241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1338.3.1

>prot_P-littoralis_Contig1338.3.1 ID=prot_P-littoralis_Contig1338.3.1|Name=mRNA_P-littoralis_Contig1338.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=280bp
MLRPTCIALLARQAVGFSPNLSSIVGANGIGMDNRARNPATATRPAGSVA
ALSASAGKVNAEEVLKSPKWPEKWPFYEDDFNRMDESSDGDFYSQPRLVY
HIDDGAVGALTKYYSKALPKGADVLDICSSWVSHFPKDWEHGKRTGLGMN
QYELSKNVQLDEYKVKDLNVDPKFPFEDASFDVVTCVVSVDYLNKPLEVF
EEIRRVLRPGGKAIMSMSNRCFPTKAIQIWNQTNDMEHIFIVGSYFHYAG
GFDPPASHDISPNPGRSDPMYIVEGRKSA*
back to top

mRNA from alignment at P-littoralis_Contig1338:9201..18343-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1338.3.1 ID=mRNA_P-littoralis_Contig1338.3.1|Name=mRNA_P-littoralis_Contig1338.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9143bp|location=Sequence derived from alignment at P-littoralis_Contig1338:9201..18343- (Pylaiella littoralis U1_48)
TGCTGCTGTGCTCCGAGTATCTGGTACGAGTACATGTTTCTGCTTTAGTC TGGCCTCCTGTGGACGTTTTGCACCTCCAGATCACTGCTCACGAAACAAA AAATGCTTCGGCCCACCTGCATAGCGCTGCTTGCCCGGCAAGCCGTGGGA TTTTCGCCGAACTTGTCCAGCATTGTTGGAGCTAACGGTATCGGCATGGA CAACAGAGCGAGGAATCCCGCGACTGCAACTCGGCCTGCTGGATCTGTTG CTGCTCTGTCCGCGTCAGCAGGGTAAGCTCGCGTGTGTACGGAGGGACAA GTCTCTCCATACGGTTCTCTTTCGCTTGTTGGGTTGGAGAGGGAAGCTTG TGTTACCCTTTTTCTGATAGTGTGAGCATGTTTACACTGTATACTACGTG GACCAGAATTTTCTTCATTTCTTCGAGGCGCCACAGGTTCGGCGCTGACT CGGTTTCTGGATTTGATGTGCACAGCGGAACCAGGAGCACACAGCAGTAG GTATATGGTGTGTTCACAACACACCGTATATACCTTTGGTAAACACATAT GGATAGAACTCCCAGCTTACTTGTCGTCGATACACCGCACTGCTCGACTG TGTTAGTCTGCACACGCCATGCATCCTACCATGCTGGGAAGCCCCCCACC TAATTGTCCATCGTACGCGTAAAACATGTAGCTGAACTCTTTACAAGACG TCCACCAAATTGTCTCGTTGAGCCTGATACCCTCAGGAGAGCTGCAACGG ATACATTATCTGATGAGTTATAGAGACTGGTAGATGCACCTTATTCTTTG TGTTCGTTGCAATATCTACTCCAGACCCTCGTCTGGAGAGAGAGGCGAAC ACATTGATGTGTTTGTAAGTAAAAAAAAAAAAGTAGCTTACAGAGTACAG CAGTTATAATACTGTGGGTAGATTACAGATCATGCCCAAATGTGACACAC GTTAGATACCGCACCCCCTGAACCGCCTTTTTTTTTTTTTAAGTTCGGGG AGCTGCATCAACGGGACTGCTGCCGTTGTACACCAATTGTCTGATGCGTT TAGGCCGGTTCTAAACCGGAATCCACATCCGAGACCAAATGTTAGAGCGG GAGGATCCAAAGAAGTTTCGGTGCAAGATGTTTCTCGTGTCAAGTCTAAA CCGATTTTTCCAAAACCAGACCCACAGATCCAGACACAGAGTGTGCGGCG CAACTACCATTACAGAGTGTAGCAGCGTCGAAGCGTGGGAGGTGTGGAAG CAAACAGCTGCTCCGGAAAGTTATCAAAAAATTCCGTCCTTCTCGACCTA GCGGGGCCGCCTGTGCTGGATAGTACGGCGGTGCTGCGCTGACAAAATTG GGTTGATGCTGTGTTGGTCCAGCGTGCGGTCTGGTCTTCATCGGCGTGCT CCCAGCACGGCACCGCGGGGGCCGGGAATCACGCTGCACAAACGCACATC TTCCTGGTACAAGTAGCTTGAGTGATTGAATCCTCGCGGCGCGAGCTGCT GCTGCTGCTGCTGCTCCCGTTGCTTGTTGTCGCGCTGCCGTGAGTCAACG GTCGAAGAAAACATCCTTGTGCCTGCGAGGTGACTGTCGTGTGCGAGTGC AAGCTCTCCCATCTCGTGTGTGTGCCGTTCTTGGGCCAATCCAGGCACGT ATTGTGCTGCTATATCATAGGAGTGAAAATGTAAGAAAACGAAACAAATA GAAGGCCATTATTCACAAATATGAAAGGAAAAAAAATACTTCGTGCCAAC TTGGACTTCAGGTGCGGTTCGCCCGACTCTCTCGGCCTGACTGCCCAGCT CTAGGTCGTTTCATGAATTTGTCGTAGGAAAAAAAAAAAGCGTCCGCGAC CACGAACGAGAGTCCAGGTCCGAAAACGTATGAAACGCATCAAAAATAAA AAGGGGTAGAGCAGTATCACATCGTGGTAATTTTACCCGATCACATCAAA GGTTCTCTGCATCTTCTCGCTCCAGCTCTTGGTGTCGGAGCTAGGTCTTG GAGGTGAATTCCGTCGAAGAACCGGCCCTAGTGTACGAGTATTTTTCATT GCGTTCGTTGCTAGTCTACTCGAGATCCTCGCCAACTGCAGAGAGGGCCG GAATGTCACACGCTCGTGTCTCTCCTCGGCTGTAGGAGCAAAAAAACTCG AAAAGTCGTATCATATGAAATGATGACGCTGCTGTGTTACTCCGTGCACT TCTGATACACTAGTGCTTCAAAGCCGGAATTCGTGTCGGTGCTGTATCGA TACAAGAGGGTGGTCGCCGTTGGAACCAGCTTGCAAATAAATTTAGCTTT GGAATCACCATCGTCCCAAGATCTATCGGAAAACCTACAGGAGTCAGCAG ATATACATAGCATTTGATGCTCACTCCCTCCTCAAAGTGTGAAGCATCGT ATGATATATGATACGCACACATCAGAGAAGTCGAGCTTTGAACACAGGTT CAAGGGAGGGGGGGGCGCGTATCTTCCTTACGCGAACGTATTGTTTGTAC CACTGATGCTCGGTAAATACGCACATGCGTGACCTTCACCGGCAGACCTG GATCCCGAATGCATAGGGTGCACCTACTTGTGCATATGAGATTTGTTTTT TGGTAGTTTACACACTCAAGTTCGTTCTTACTTGGAAGCACGTCGAGGTA TAGAGTGGATGAGGAAGCCGGACCGCTGGCTTTTGAGAAAAATAAAACAC TGAAAAAAAGATGGAACACCCCACCGACGGGACTTCGTGGTATGTGTTTG AGTTTCATATGTGGGCCTTGAAAAAACAAATTTACCGTAGAACTAGATTC GCTCACACAGGCAGTCCAGAATACGCAGTGCTGAAGGCCCTCGAGTGTGT AAGATCTCGAACCTCCCAAGTTCATTCAAAAATTCAACAGCGGAAGGGGG GAAAAAAGCAGCGCCGCGAAAAAAAAGAAAAAAAAAAGGGATCACGGCAC TAAATGAAGATCGTACAAAACATGCCTTCCAATTTTTAATGTTGTCACCC GCGTTGTCTCTGGAGCATTTCGTGCAAATTTTCTTGCAGCACGTGACACT CAAGGCCATTTGGCGTGAGTAAAAGTCCCCGTACACATGTCGGGCACAAT AATCGTCTCTCGATGTAAACATTTTTCTTCGAGCTACACATGCATGTAGT GCTGTGTACGAACTGCCTCGCACACGAACCGAGTCGTTTTCGAAAAACTA TGGAATTCCTGCACCCGCCAACAGTCCTGGTCTCCTCCTCGTACTCTCCG TCTGACCCGATTATAATATGGTGATCAACCCGTCAAAGCCGTCCAAGATG CAGCGGTACCAGTACAGTAGTACATCAACTTCTCTTTCATATGCTCACTC TCTGTCTGTTTTAATTAATGTGATCAATTGGATGATACAGCAAGGTTAAC GCAGAGGAGGTGTTGAAGTCCCCCAAGTGGCCGGAAAAGTGGCCTTTCTA CGAGGACGACTTCAACCGCATGGACGAGTCCAGCGACGGGGATTTCTACT CGCAGCCGAGGCTCGTCTACCACATCGGTCAGTTTTTCCTTCTTGCTGCT GCTGCTGCTGCTGCTGCTTTCAATCAGTCAGTCGCCGTTTCAGAGGTGAA AAGGCACAGCAGATACAGCAGGCACATCTTCTTCGGCGTTTGTTTTCTTT TCGTCTGTTTTTTTTTTTTTCACTTGTCGTTGTTTTCAGTCAGCTCCGCT TGCGAGGCGCGAGCTCCTACATACGTGTACACGTCTTCCGCATTTGTTTT TGGTTTTTCAATCTGTTTTTTATCCACGGTGTAGAGGTACACGCCCTGCG CATTTTTTTTTCTCGATTTTTGTTTTTCATCTACTTCTACGAAAGCCCAC CCGTCATTTTAGTTTTTTTCACTTTCTTGCTTGTCGTTTGAAGCCCAGTC CCGCTTTCCAGTCGCAAAAACACTCATGCGTTTCAGATCGCCACTGCCCT CCTGATTTTTTGTATTTCGTTTTGCATCTATCATACGTGGATAAAATACG ACCGCCGCACAGTATATTTTGGTGGTCGTTTGGCAAATTCTTTGGAAACC CAGCAGTAAGCACACAAATGGGCAGAGGGCCGAATGTTTTTCATTTTTCA TTTTTCACAAGCCTTCGCCAGAGAAAAGTTCCCGTTTTGATTTTATTTAG TCCATCTTTTTTGGACGCCAGCCAGCCTACACCCTTTTCTTCTTTTTGGG TGCAGTATCTGAGTTGGACCACAAATTGGGAAAGGTCAACACCAGACGCT TTTTTTTTTTTTCTTGCACTTTTTTTTTACTAATTTCTTTCTGCGGTCGT TGCCTTGGGTTCTTGTCACAAGAAGGTTCAGGTTTCAGTCGTCGCTTTTC TAGTCGAAGTTTGAATCGATAATGTCTACCAGGTACTCACTCACGAAAGA GGATGCGATGTATACAATCACACTCACTTTCAGTCAAGGCCAAGTTTGTT TTGTCATTTTTATTTGTTCTTATTTATAGAGGTAATTTTTTTGTTTTTTT ATTTTTGAAGACGATGGTGCCGTGGGAGCGCTGACGAAGTACTACTCCAA GGCGCTGCCCAAGGGGGCCGACGTGCTCGACATCTGCTCGTCCTGGGTGA GCCACTTCCCCAAGGATTGGGAGCACGGCAAGCGAACAGGGTGAGGGGAG CAATATCTCGACTTTTTCTTTTCGTGTTGTGCCGTATTACACGAACTTTG GATGCCATACTACCAACCCCATCCCACTTTTTCGCCATATCGCAGGAATT TATCCGGTTGTTTTGCGTACACGGCGGTTAGCGCCACTCTCGATACATGT TACTCCCACTCCTACTTCTTCCCCGTCCCGTCTTGAAAATAAAATTGCGG GTGGGGATGAACAAGTTCTGAGCACACGCCTGTGAAAAGATGTTTGTATC CACATCTATGTATCATACGTACAGAGAAAAATTCACCAAAGTATAATCTA CTAGTTATATATCGTGTTTTCAAGCTTGCGCTAGGGCATCATTCTGGAAA TGCCGATGTGGTTCGGGCACGTTTTTGAAGTGGATGCTAAACGTATCACA GACATTTTCGGCCTTGTGCTGGGGCGGCAAAAAGTTGTTGCTGATTTGTT GTTGCTGTTAGGTGTCAACATTCACTACATCCATCCCATCCCATTTCCAT CCCATCCCATCCCATCGTATCCCATTCTATTCCGGCCACATCAACACTGC TGTATCGAAACCAAACTTCAAGGTTTGCGATGGTGCTCTCAAGCAAACAC CGTATCGGTAGTACGAAAGGACAAAGACGGGGACACCAAGGATATTCCAT CCCATCCCGTCCCATCCCACTCCTTCTTATCTCATCTCATCCCATCCCAT CCCATCCCATCCCGTTCCGTAAATTTGATCGCATCTCCGCAACAAAATAC TCAAAATACAGACACAAATCGTTACCCGCACACATGCACACAAACTGAAG CTTGGACAGGCATTTTTCTACAATTCACTGAAAAAAACATTCGAAACTTC TCGACAACATACAAAATAAAAAATAAAAAATAAAACAGTCATCTTACGAG CAAAGCAACACATATGTTACAGGTTGGGAATGAACCAGTACGAGCTGAGC AAGAACGTTCAGCTGGACGAGTACAAGGTCAAGGACCTCAACGTCGACCC TAAGTTTCCCTTCGAGGACGCCTCGTTCGACGTAGTCACCTGCGTCGTCT CGGTGGACTACCTTAACAAACCGCTCGAGGTTTTCGAGGAGATTCGGAGG GTGCTGAGACCCGGGGGGAAGGCTATCATGTCCATGTCCAACAGGTGAGA TGGATATGAAGTCCGTCTAGGAAAAAAATACAGACATCATTGTCGTGAAT AGTACACGCACAAACGTTACGACGGATTTGTTCCCACACAACGCCCCCCT TTTGCTTCGGTCGTTCGGTCTTCAACAACCATGTTTCGGAATCTGCCTGT CATGGATGTTTCTTGTTTCTTTTATATATGATGTCGTAATTTTTTTTGTA TGAAAGCATATCATAGGTGCATCGTATTTCCTCAGCACTCACTGTGATAT CAAGACGTGGCTGCAGCGAGGCACGTATATTCGTGTGTGTGTCTGTGGTA GGAAGGACCAAAATTAAGATAGACAGCAGCACTGCTGTGTTATGGGGTCA CTCACCACTCACCACGCTTCACGTTTGTCTCCGCACTGCAAAATTCACCG CGCACGGGCGGCACTACCACCGCGCCACACCGCACCGCACCACACCACGC CACGCCACGCCACGCCACACCATGCCACTCGTGCCGCGAGCCTACAGGTG TTTCCCGACGAAGGCGATCCAGATCTGGAACCAGACGAACGACATGGAGC ACATCTTCATCGTAGGTCAGTTGTAACTGCTTGCAGCGGGTGCTGTGGGC ACCACAAGCGGTGGGTTCGCACAGTCTCTACACAAACAAGAGCCAGCAGA TAGGCAGGCCGTCAGAGTGGCAGACAGACAGACAGACAGACAGGTATATA GTCCAGAAGATGTAGGCGGACAACCCGAGGGAGGTACATGGGCAGTCGAA AGAGGTGGCCAGACCGGGGGGCAAGTTCAGGCCATCGGAGATCGATGTAG AAATATGTTGAGATTTTGAAAAAAGAAAGTGCCGAACGACAGAGACAAGT ATTGAAGAAATAAAATTATGTAATACTTCCTCTGTCTCATAAGTCTGTGC CGTTGTGTTTTTACGCCCCCTTAATGGTGTCCGATGTCTTCGGCGATAAT TTTTTCGACATCTTCGGAGTTTTTTGGGTTGAAACACATTTTTTTTCTTT TCTTGCGCACTACCCTGCATGGGCTAGCGGCTAACAAAAAAAAGTAGTCA GCCCAAAAATGGCCGTATTTGACCCTTTCCAGGGGTGGAGGGGGGGGGCG GGGGCACAAAAAAAAACAATGCAATCTCCCCCACAATTATCCCTAACCCT GAACCTAGCCCCCCTAACTCAAAGATTCATGTCGAGTCCCCCCTTACTAA AATCAGTAGAATAGTGACGCCACACTAAAACCAAGACAATTGGGTTTTCC ACACTAAAACGAAGATACTTGGGACTCATGCTCTAAAACCAAGACATCTG GCGGAATCAAAATTCTCAACAATAGGCCAAAATGGGCATATTTTGACTTC ATTTTAGTTTTTTAAACAACTGGCTTTTTTTTTCTTTTTTTTTTGCATCA GCTTCTTTGAGACTCTATCTTTCGAACGAATCTAACTATAGGATGATCGA AACAGTATGGACGCGCAAACAATTACACGCCCATAACGGCACAGACTTAT GAGACAGAGGAAGTATGCTTCGAAGTATTGAGATAGATCGAAACGACATC CTGTACGAACTTCGTGAGAAACTGAAAAAGACGAAGCGGACCTTTTTTGA GAGATGCTGAATACTGAGGTTCAAAATACACGCCCCCCCCTTTTTTTATT TCGTTCGGCAGGCTCCTACTTTCACTACGCGGGAGGCTTCGACCCACCCG CGTCGCACGACATTTCTCCCAACCCAGGCCGGTCGGATCCCATGTACATC GTGGAAGGCCGAAAATCGGCGTGATGAATTTTCTCGTTTTTTTTGTATCG CTTTCGGATAAAAGTACTTGGAATGAGTAAAAGCAAATAAAATTAGTAAG GGTGAGTTACTTTACGGAGAGGCTTTCGCTTACACTGCGGGACCTCCGGG AACGTACTGCTCACCGTTAGACTTTGAAGTATAATAGCGTAGGTCAAAGC GCGCGCTGCTGGCGGTACTGAGTTGCTCGTGTCCCTTTTTTTTTGTGGAT GTTTGTGTGTCCGCGTGTTCGTCTGAAAGCTTTTGGCGTTGATGCCTCCG TGCGCTGCTGTCTTCCCCCCCTTTTTGTCTCTTTGGCCGGATCTCCTGGT GGTTTCAACTTCATATATATTCAGTGCACCGAGATGCGGATGAGGTAATA ACGCATATGCATCTCTGTAGACACGTGTTGCGAGAGGATGGCGTCGCGCC GTGCGGATGCACCTACCCTGCAGCAGTAGGGAGGTGTTGATTGCATGGCG AGCGTGTCACAACGGTAATTAGCAGGATGAGCACCGGGTGAAGGCGTTCG ATAACTGTGATGAGAGCCCCATGGTGGAAAAAGGGCGAAGGAGCGCAGGA GTCGGAAGAGAGATGACTGCTACAAAGTCTGGAGAACGTGCTCGCCGTAC GCGAGATGGATAGAGAGACTGTCAGGAGGATGGCGAAGGAGGAGGACGAG AGTGTTGATGAATATATGTCACAGATGACAACAAGCCTCTGGTGTGACTA AACTTTGGAGACGGAAAATACTGGCAGTGTTGCAATCTATATCGGGGTGG GGTTCAGCAGTATGAGCACGAGATGGGCGGCGAGGTGCCCCGTTGGTTCC TTTGGCCAACCGCTGTTTTTTCCGTACGTTTCGTACGATAGATGCAGGCT GTGACTACGGTCGGGGGGGTATCTCTCACAGTCCTGTCTGTGTGGTCGGA AAAACTGTTTATTTTATTATTTTTGTCATACGGGACGGAAAACGAACAAC TTTATCGTACTCACGTAGTACGTGTGTCAACCAATTCTTCCCATAAGACC GCCGTTCTTAACCAAAGACTTAAGACTGTAACCAAAAATACTGTATTTTT GTTGGTAAGATTTTTCCTGCATCATGTCATGCGCAGGTAGTACAGTACTT TACACAGGTACATACGTACAAGTATACACCATTTTGGACCTCGGACTTTC GAACGCACATCTTGAAGTCGACCGACCGCGGTTTTGCTATGAAAGCGCGC CTGGGAGTCGGAACAAGCCCGAGGGAGCGGAGCGCCGGGCGGGCGGGCGA GTTTTTTTTTTTCCCCTCAACTACTGACACCCAGGACGTGGGTTAGAATC CCGGTGACGTCACTCGATCCCGGAGTTTTCTCACAGTGGTTGTTGGGAGT GGAAAACGACTACATGTATGTCGCGAGTACGTATGCAAACACATCGCGAG TGCACAGTTGACGAGGGTAAACGGGACGGTTGAAACCTTATCGCGCTAAG AGGCTGAAAAGTGAACAAGAGAAGCACCGCAGTAGGCGGGGGGAGGAAAA AAGAAGCAAACACTCGTGTATATATTTGACCTTTTTCTTCCGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1338:9201..18343-

>mRNA_P-littoralis_Contig1338.3.1 ID=mRNA_P-littoralis_Contig1338.3.1|Name=mRNA_P-littoralis_Contig1338.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=840bp|location=Sequence derived from alignment at P-littoralis_Contig1338:9201..18343- (Pylaiella littoralis U1_48)
ATGCTTCGGCCCACCTGCATAGCGCTGCTTGCCCGGCAAGCCGTGGGATT
TTCGCCGAACTTGTCCAGCATTGTTGGAGCTAACGGTATCGGCATGGACA
ACAGAGCGAGGAATCCCGCGACTGCAACTCGGCCTGCTGGATCTGTTGCT
GCTCTGTCCGCGTCAGCAGGCAAGGTTAACGCAGAGGAGGTGTTGAAGTC
CCCCAAGTGGCCGGAAAAGTGGCCTTTCTACGAGGACGACTTCAACCGCA
TGGACGAGTCCAGCGACGGGGATTTCTACTCGCAGCCGAGGCTCGTCTAC
CACATCGACGATGGTGCCGTGGGAGCGCTGACGAAGTACTACTCCAAGGC
GCTGCCCAAGGGGGCCGACGTGCTCGACATCTGCTCGTCCTGGGTGAGCC
ACTTCCCCAAGGATTGGGAGCACGGCAAGCGAACAGGGTTGGGAATGAAC
CAGTACGAGCTGAGCAAGAACGTTCAGCTGGACGAGTACAAGGTCAAGGA
CCTCAACGTCGACCCTAAGTTTCCCTTCGAGGACGCCTCGTTCGACGTAG
TCACCTGCGTCGTCTCGGTGGACTACCTTAACAAACCGCTCGAGGTTTTC
GAGGAGATTCGGAGGGTGCTGAGACCCGGGGGGAAGGCTATCATGTCCAT
GTCCAACAGGTGTTTCCCGACGAAGGCGATCCAGATCTGGAACCAGACGA
ACGACATGGAGCACATCTTCATCGTAGGCTCCTACTTTCACTACGCGGGA
GGCTTCGACCCACCCGCGTCGCACGACATTTCTCCCAACCCAGGCCGGTC
GGATCCCATGTACATCGTGGAAGGCCGAAAATCGGCGTGA
back to top