mRNA_P-littoralis_Contig1337.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: D8LPK5_ECTSI (Histidine kinase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPK5_ECTSI) HSP 1 Score: 172 bits (435), Expect = 2.350e-43 Identity = 111/293 (37.88%), Postives = 176/293 (60.07%), Query Frame = 1
Query: 34 IIALCVFKSYFLFGLTTIVIINGLILLTSVFSNQLYSSILCLLYTIV*LGYTLSDRGPYAFLAVNE--DSMIIGTDMTIIELTLLSATISIVFTRVRKLESSEREWRENTEKVMDDQMVNLCRIGHDLNNNFTLVKGLCENIFDDSIPHDSKLKIVNAINTLNGVLISDIMDTFRDDPT-RKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMR---DDIPFVYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRY-TEETLSIVVTDTGIGISEKDIPKLFDEFYR 891
I ++C F +Y L G +IV++ GL++ S +Q ++S++ L LG T + RGP+ + D ++IGT M I L+ L+A + I+ +++R L++ E+ R E++ + Q ++L RIGHD+ NN TL++ LCE ++ +S L+ V ++N L VL+SD++D R + KE +D+ +L+ Y +V GM LEGK ++ G+R + VY N ERLHQIMCN++ N+VKYTQ G I +E T+ I VTD+GIG+SE D+ K+FD F+R
Sbjct: 198 ITSMCAFSNYHLLGFASIVVMYGLLVGVSACIDQFHASLVQLACMGSILGLTAAGRGPFVHAVKDRETDEVLIGTQMGIAALSALNAFVVILVSQLRDLQTFEKISRCQAEELAERQTLDLYRIGHDMKNNATLIQALCE--VGETDGDNSILETVKSVNILGNVLVSDMVDMVNGSKAHRVVPKEDVDIKELLNVYSMVGTGMLLLEGKDKDITM-GVRIADGEKLEVYINKERLHQIMCNILSNSVKYTQSGTIVLEAGCCSESTVEIRVTDSGIGMSEADVCKVFDLFFR 487
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: Q8QNA2_ESV1K (EsV-1-186 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNA2_ESV1K) HSP 1 Score: 171 bits (433), Expect = 4.470e-43 Identity = 112/305 (36.72%), Postives = 179/305 (58.69%), Query Frame = 1
Query: 1 NSSACTIGIPI-IIALCVFKSYFLFGLTTIVIINGLILLTSVFSNQLYSSILCLLYTIV*LGYTLSDRGPYAFLAVNEDS--MIIGTDMTIIELTLLSATISIVFTRVRKLESSEREWRENTEKVMDDQMVNLCRIGHDLNNNFTLVKGLCENIFDDSIPHDSKLKIVNAINTLNGVLISDIMDTFRDDPT-RKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRDDIPF---VYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRYTEE-TLSIVVTDTGIGISEKDIPKLFDEFYR 891
N+ C I + + I ++C F Y LFG +IV + L++ S + +Q +S++ L T LG+T + RGP+ + + ++ ++IGT M I L+ L+A + I+ +++R L+ SER R ++ + Q ++L RIGHD+ NN TL++ +CE ++ + L+ V ++N L VL+SD++D R + KE +D+ +L+ Y +V G+ LE K ++ DD Y+N ERLHQIMCNLV NAVKYTQ G I + E T+ I VTD+G+G+SE D+ K+FD F+R
Sbjct: 186 NTLVCGISVFLGITSMCPFSDYHLFGFASIVGMYALLVGVSAYIDQFQASLVQLACTGSILGFTAAGRGPFVHVMKDGEAEEVLIGTQMGIAALSALNAFVVILVSQLRDLQKSERISRCQAAELAERQTLDLYRIGHDMKNNATLIQAICE--VGETDGDNRILETVKSVNILGNVLVSDMVDMVNGKQVHRAVPKEDVDITELLNVYSMVGTGLLLLEEKDKDITVGVRIDDESENFGAYTNRERLHQIMCNLVSNAVKYTQCGKIVLSAGCSSESTVEIRVTDSGVGLSEADVCKVFDLFFR 488
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: D7G325_ECTSI (Histidine kinase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G325_ECTSI) HSP 1 Score: 149 bits (375), Expect = 1.100e-36 Identity = 83/176 (47.16%), Postives = 108/176 (61.36%), Query Frame = 2
Query: 893 RCSAATRVNSGTGVGLANVKNICNMIGATITASSIGRGFGSTFTLSLKRDKFI------ETKNTFSFRVLVIDDSSVIRELLSHYLSSMGCDVVSNNSVEEARKKLAG-----FDVIFTDGSMEGQSGTDFIKDIRGGLVTDAPYDIPIVLCSGEKHEIEDERTLVVVKPFSRGDI 1387
R A++++SGTG+GL+NV+NIC+ IGA I SS G G G TFTL L R + + FSFRVL +DDS VI LLS Y +S GC+VV+ S EE+R L FDV+ TD M ++G D I +R G V P D+P +LCSG+ HE +D RT+ + KPFS DI
Sbjct: 212 RSRRASQISSGTGLGLSNVRNICDAIGAKIGVSSPGEGKGCTFTLVLPRRRRSIFSGHGQISMQFSFRVLAMDDSIVILRLLSKYFTSFGCEVVNACSAEESRALLGQPNQEKFDVVITDSFMGDETGIDVIHSLRRGAVRGLPSDLPCILCSGDSHEFDDPRTVSITKPFSSADI 387
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: A0A6H5JSS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSS5_9PHAE) HSP 1 Score: 152 bits (384), Expect = 3.830e-36 Identity = 103/325 (31.69%), Postives = 181/325 (55.69%), Query Frame = 1
Query: 7 SACTIGIPIIIALCVFKSYFLFGLTTIVIINGLILLTSVFSNQLYSSILCLLYTIV*LGYTLSDRGPYAFLAVNED---SMIIGTDMTIIELTLLSATISIVFTRVRKLESSEREWRENTEKVMDDQMVNLCRIGHDLNNNFTLVKGLCENIFDDSIPHD---SKLKIVNAINTLNGVLISDIMDTFRDDPT-RKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYN-GMRDDIPFVYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRYTEE---TLSIV--VTDTGIGISEKDIPKLFDEFYR*M*CSHTG*LRDRGGIG 942
+A +G+ ++ + F Y +F I+ G I+ S +Q + ++ + + LG T+ RGP+ + E+ ++I+ T + T SA +SI TR+RKL++ E+ E EK+++ Q V LC++ HD+ NN T + G+ E++ D P S+LK++ A T+NG L+ D+ D+F+ + R I + ++DV ++ E ++ A+ + + G+S+ + + G + V+++ +RLHQI+ NLVGNAVKYT+ G I + ++ T S++ V DTGIGI +DIPK+F +R C+ L G+G
Sbjct: 216 AAMVLGLAGVVLMFAFTDYGVFAFGAILGAYGSIVTVSTQLDQWNACLMGAVAAALMLGLTMGGRGPFNSVCYFEEGARNVILSTQLATTVATGCSAFVSISSTRLRKLQAREKASLERAEKMIETQTVQLCKVAHDMLNNTTFIWGVTESLADTLPPTGQSASQLKMIQAAITMNGTLVKDMTDSFKPEGHGRPIRRTEVDVQEMAELHVNFAKALVRMAGRSIETTLDLGTAEGEFKVFTDRDRLHQILSNLVGNAVKYTKSGTIVLRVSRQDDAGTTGSVILQVIDTGIGIDAEDIPKIFGTLFR---CARGAQLAPGSGLG 537
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: D7G737_ECTSI (Histidine kinase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G737_ECTSI) HSP 1 Score: 151 bits (382), Expect = 7.060e-36 Identity = 103/324 (31.79%), Postives = 181/324 (55.86%), Query Frame = 1
Query: 10 ACTIGIPIIIALCVFKSYFLFGLTTIVIINGLILLTSVFSNQLYSSILCLLYTIV*LGYTLSDRGPYAFLAVNED---SMIIGTDMTIIELTLLSATISIVFTRVRKLESSEREWRENTEKVMDDQMVNLCRIGHDLNNNFTLVKGLCENIFDDSIPHD---SKLKIVNAINTLNGVLISDIMDTFRDDPT-RKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRDDIPF-VYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRYTEE---TLSIV--VTDTGIGISEKDIPKLFDEFYR*M*CSHTG*LRDRGGIG 942
A +G+ ++ + F Y +F I+ G I+ S +Q + ++ + + LG T+ RGP+ + E+ ++I+ T + T SA +SI TR+RKL++ E+ E EKV++ Q V LC++GHD+ NN T + G+ E++ D P S+LK + A T++G L+ D++D+F+ + R + + ++DV ++ + ++ A+ + + GKS+ + + + F V+++ +RLHQI+ NLVGNAVKYT+ G I + ++ T S++ V DTGIGI +DIPK+F +R C+ L G+G
Sbjct: 217 AMVLGLAGVVLMFAFTGYGVFAFGAILGAYGSIVTVSTQLDQWNACLMGAVAAALMLGLTVGGRGPFNSVCYFEEGARNVILSTQLATTVATGCSAFVSISSTRLRKLQTREKASLERAEKVIEAQTVQLCKVGHDMLNNSTFIWGVTESLADTLPPTGQSASQLKSIQAAITMSGTLVKDMIDSFKPEGHGRPVRRTEVDVQEMADLHVNFAKALVRMAGKSIETTLDKGTTEGEFNVFTDRDRLHQILGNLVGNAVKYTKSGTIVLRVSRQDDSGKTGSVILQVVDTGIGIDAEDIPKVFGTLFR---CARGAQLAPGSGLG 537
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: UPI001ADED329 (HAMP domain-containing histidine kinase n=1 Tax=Sediminibacillus sp. DP4-553-S TaxID=2729421 RepID=UPI001ADED329) HSP 1 Score: 90.5 bits (223), Expect = 7.370e-16 Identity = 63/184 (34.24%), Postives = 93/184 (50.54%), Query Frame = 1
Query: 358 EKVMDDQMVNLCRIGHDLNNNFTLVKGLCENIFDDSIPHDSK-----LKIVNAINTLNGVLISDIMDTFR-DDPTRKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRDDIPFVYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRYTEETLSIVVTDTGIGISEKDIPKLFDEFYR 891
EK ++ I H+L T +KG + I + D K L I+ L+ D+MD + ++ + EKID+ ++E + V + E K + V YN DIP ++ R+ QI NL+ NAV+YT+ G I I Y ++ I ++DTGIGIS+KDIP LFD FYR
Sbjct: 234 EKYQQNRHEFFSNISHELKTPITYIKGYTQAI-QKKLYRDEKEKKLFLNIIENETVRMNKLMDDLMDLSKIEEGKLNLQYEKIDLTHVLE--MAVNKIQIKAEEKRLTVHYN-QETDIPLFVADGYRMEQIFTNLLENAVRYTEEGSIKVTISYHHSSIRIRISDTGIGISDKDIPHLFDRFYR 413
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: A0A7C6DSY6_9BACT (HAMP domain-containing histidine kinase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C6DSY6_9BACT) HSP 1 Score: 89.4 bits (220), Expect = 1.180e-15 Identity = 55/171 (32.16%), Postives = 96/171 (56.14%), Query Frame = 1
Query: 397 IGHDLNNNFTLVKGLCENIFDDSIPHDSKLKIV----NAINTLNGVLISDIMDTFRDDPTR-KISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRDDIPFVYSNIERLHQIMCNLVGNAVKYTQRGC-ITFGIRYTEETLSIVVTDTGIGISEKDIPKLFDEFYR 891
+ H+L T +KG E I + + + +K V N N LN L++ I+D R + + K+K+D+ D++E I + ++ +V++ + ++ V+++ E++ QI+ NLV NA+KYT G IT GI+ + + V+DTGIGI +KD P +F++FYR
Sbjct: 187 VSHELRTPLTSIKGFAETILQEDLSKEEIMKFVQIIYNEANRLNN-LVNAILDISRIEAAKVHFKKKKVDLKDIVENVIELV--YPRIKSSDLVINRDYSDEEKYIVFTDEEKVEQIILNLVDNAIKYTPFGGEITIGIQNKGNEILVYVSDTGIGIPDKDKPHIFEKFYR 354
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: UPI0013E9425E (ATP-binding protein n=2 Tax=Clostridium TaxID=1485 RepID=UPI0013E9425E) HSP 1 Score: 89.0 bits (219), Expect = 3.220e-15 Identity = 62/223 (27.80%), Postives = 107/223 (47.98%), Query Frame = 1
Query: 289 TISIV--FTRVRKLESSEREWRENTEKVMDDQMVNLCRIGHDLNNNFTLVKGLCENI--FDDSIPHDSKLKIVNAINTLNGVLISDIMDTFRDDPTRKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRDDIPFVYSNIERLHQIMCNLVGNAVKYTQRG-CITFGIRYTEETLSIVVTDTGIGISEKDIPKLFDEFYR*M*CSHTG*LRDRGGIG 942
T+++V T V+KLE ++ N + H+L T +KG E + DD+ + L I+N LI+DI+ + + I KEKI+V +++ + + M+ ++G + + DI + + +R Q++ NLVGNA+ Y++ G + G E+ + V DTG+GI++K IP++F+ FYR R GG G
Sbjct: 330 TVAVVQDITEVKKLEKMRTQFVAN--------------VSHELKTPLTSIKGFAETLKYVDDAETKEKFLNIINEEAERLTRLITDILTLSHIEQQKGIKKEKINVNKIVKDVYNLMKNMADVKGIKLTIQ----EQDIKILKGDADRFKQMLINLVGNAINYSETGDSVCIGTENKEDGFILYVVDTGVGIAKKQIPRIFERFYR----VDKARSRSNGGTG 530
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: UPI001FE65F6E (cell wall metabolism sensor histidine kinase WalK n=1 Tax=Desertibacillus haloalkaliphilus TaxID=1328930 RepID=UPI001FE65F6E) HSP 1 Score: 88.2 bits (217), Expect = 3.740e-15 Identity = 59/212 (27.83%), Postives = 111/212 (52.36%), Query Frame = 1
Query: 268 ELTLLSATISIVFTRVRKLESSEREWRENTEKVMDDQMVNLCRIGHDLNNNFTLVKGLCENIFDDSIPHDSKLKIVNAI--NTLN-GVLISDIMDTFR-DDPTRKISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRDDIPFVYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRYTEETLSIVVTDTGIGISEKDIPKLFDEFYR 891
EL L+ATI+ + ++ K+E R+ E + D + N H+ T ++G E + DD I + K N + T+N L+ D+MD + K+ KE + V +E ++ + + +E K + + + F+Y++ RL+Q++ NL+ NA+K+T G I+ + E + ++++DTGIGISE D+P +++ F++
Sbjct: 194 ELGELAATINHMSEKLDKVEGE----RQRIENIRTDFLANF---SHEFRTPLTAMQGFIEALQDDLIAEKGRKKYYNVMYEETMNLNCLVDDLMDLIKLRSQETKLLKETVHVNHALEKVLL--KFQTAVEEKGLSFKVRSEEESL-FIYADPSRLNQVIDNLLANALKFTNEGSISITAKRNGENIELIISDTGIGISEADLPYIWERFFK 395
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Match: A0A7V1D580_9GAMM (Histidine kinase n=1 Tax=Ectothiorhodospiraceae bacterium TaxID=2026737 RepID=A0A7V1D580_9GAMM) HSP 1 Score: 84.3 bits (207), Expect = 3.950e-15 Identity = 50/140 (35.71%), Postives = 83/140 (59.29%), Query Frame = 1
Query: 475 DSKLKIVNAINTLNGVLISDIMDTFRDDPTR-KISKEKIDVLDLIETYIIVARGMSGLEGKSMVVSYNGMRDDIPFVYSNIERLHQIMCNLVGNAVKYTQRGCITFGIRYTEETLSIVVTDTGIGISEKDIPKLFDEFYR 891
DS +I A N L G LISD++D + + R E++ + +++E + R ++ +G + VS + D P + ++ +RL Q + N + NAVK+T++G +T + + + I VTDTGIGISEKD+P+LF+ F R
Sbjct: 17 DSMQRINRAGNHLLG-LISDVIDISKIEAGRIDAYPEQVSLKEVVEDAVESIRPLADAKGLKLEVSIDDPEDSWPEMTTDRKRLMQCLLNYLSNAVKFTEQGMVTLTVSVNGDRVEISVTDTGIGISEKDLPRLFEAFER 155 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1337.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1337.4.1 >prot_P-littoralis_Contig1337.4.1 ID=prot_P-littoralis_Contig1337.4.1|Name=mRNA_P-littoralis_Contig1337.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=219bp MIIGTDMTIIELTLLSATISIVFTRVRKLESSEREWRENTEKVMDDQMVNback to top mRNA from alignment at P-littoralis_Contig1337:17282..18668- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1337.4.1 ID=mRNA_P-littoralis_Contig1337.4.1|Name=mRNA_P-littoralis_Contig1337.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1387bp|location=Sequence derived from alignment at P-littoralis_Contig1337:17282..18668- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1337:17282..18668- >mRNA_P-littoralis_Contig1337.4.1 ID=mRNA_P-littoralis_Contig1337.4.1|Name=mRNA_P-littoralis_Contig1337.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=657bp|location=Sequence derived from alignment at P-littoralis_Contig1337:17282..18668- (Pylaiella littoralis U1_48)back to top |