mRNA_P-littoralis_Contig1336.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1336.8.1
Unique NamemRNA_P-littoralis_Contig1336.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1336.8.1 vs. uniprot
Match: A0A6H5KJZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ7_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 4.810e-6
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  187 ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 315
            ASA+KA+GK Y LWA   L+R C++R IPRMS++  K+ + +A
Sbjct:  133 ASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKDVLVQA 175
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BLAST of mRNA_P-littoralis_Contig1336.8.1 vs. uniprot
Match: A0A6H5KKV3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKV3_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 5.280e-6
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:  121 VNGKGKGKARTESVGGRRNPHQ---ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 315
             +GK K  A   +VG R +      ASA+KA+GK Y LWA   L+R C++R IPRMS++  K  + +A
Sbjct:  181 THGKRKASAGGSAVGNRNSTKASLGASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQA 248
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BLAST of mRNA_P-littoralis_Contig1336.8.1 vs. uniprot
Match: A0A6H5K6G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G9_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 6.900e-6
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:  127 GKGKGKARTESVGGRRNPHQ---ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 315
            GK K  A   +VG R +      ASA KA+GK Y LWA   L+R C++R IPRMS++  K+ + +A
Sbjct:  110 GKRKASAGGSAVGNRNSTKASLGASANKARGKDYPLWAAHLLRRTCAHRKIPRMSKKGDKDVLVQA 175
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BLAST of mRNA_P-littoralis_Contig1336.8.1 vs. uniprot
Match: D8LU04_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU04_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 7.040e-6
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  187 ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 315
            ASA+KA+GK Y LWA   L+R C++R IPRMS++  K  + +A
Sbjct:  133 ASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQA 175
[Close]
BLAST of mRNA_P-littoralis_Contig1336.8.1 vs. uniprot
Match: A0A6H5K825_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K825_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.860e-6
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  187 ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 315
            ASA+KA+GK Y LWA   L+R C++R IPRMS++  K  + +A
Sbjct:  206 ASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQA 248
[Close]
BLAST of mRNA_P-littoralis_Contig1336.8.1 vs. uniprot
Match: D8LJH4_ECTSI (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH4_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 9.130e-6
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  187 ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 315
            ASA+KA+GK Y LWA   L+R C++R IPRMS++  K  + +A
Sbjct:  133 ASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQA 175
[Close]
BLAST of mRNA_P-littoralis_Contig1336.8.1 vs. uniprot
Match: D7FJ39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ39_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 9.310e-6
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  187 ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 315
            ASA+KA+GK Y LWA   L+R C++R IPRMS++  K  + +A
Sbjct:   10 ASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQA 52
[Close]
BLAST of mRNA_P-littoralis_Contig1336.8.1 vs. uniprot
Match: D7FU69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU69_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 9.540e-6
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  187 ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 315
            ASA+KA+GK Y LWA   L+R C++R IPRMS++  K  + +A
Sbjct:  133 ASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQA 175
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1336.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KJZ7_9PHAE4.810e-651.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKV3_9PHAE5.280e-642.65Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K6G9_9PHAE6.900e-643.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU04_ECTSI7.040e-651.16Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K825_9PHAE7.860e-651.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJH4_ECTSI9.130e-651.16Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
D7FJ39_ECTSI9.310e-651.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU69_ECTSI9.540e-651.16Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1336contigP-littoralis_Contig1336:12154..12469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIC6
Model size317
Max annot lvl2880.D7FIC6|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.59e-06
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789614.2868354-CDS-P-littoralis_Contig1336:12154..124691680789614.2868354-CDS-P-littoralis_Contig1336:12154..12469Pylaiella littoralis U1_48CDSP-littoralis_Contig1336 12155..12469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1336.8.1prot_P-littoralis_Contig1336.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1336 12155..12469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1336.8.1

>prot_P-littoralis_Contig1336.8.1 ID=prot_P-littoralis_Contig1336.8.1|Name=mRNA_P-littoralis_Contig1336.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
NGSKSPRSGRESGESSVVDARSNLARSDVVDSSDDSSPTNVNGKGKGKAR
TESVGGRRNPHQASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKE
AIAEA
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mRNA from alignment at P-littoralis_Contig1336:12154..12469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1336.8.1 ID=mRNA_P-littoralis_Contig1336.8.1|Name=mRNA_P-littoralis_Contig1336.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=316bp|location=Sequence derived from alignment at P-littoralis_Contig1336:12154..12469- (Pylaiella littoralis U1_48)
AACGGAAGTAAGTCGCCAAGATCGGGGCGCGAATCTGGCGAATCGAGTGT
TGTTGACGCCAGGTCGAATTTGGCGCGCTCCGATGTCGTCGACAGTAGCG
ACGACTCGTCCCCAACGAACGTCAATGGCAAGGGAAAGGGGAAGGCGAGG
ACCGAAAGTGTCGGCGGAAGGAGGAACCCCCACCAGGCAAGTGCCGAAAA
GGCAAAAGGGAAGGGATACCAGTTGTGGGCCCTCGGCTTCTTGCAGCGAG
CCTGCTCGTATCGTGACATCCCGAGAATGTCACAACAAAAATCGAAGGAG
GCGATAGCGGAGGCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1336:12154..12469-

>mRNA_P-littoralis_Contig1336.8.1 ID=mRNA_P-littoralis_Contig1336.8.1|Name=mRNA_P-littoralis_Contig1336.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig1336:12154..12469- (Pylaiella littoralis U1_48)
AACGGAAGTAAGTCGCCAAGATCGGGGCGCGAATCTGGCGAATCGAGTGT
TGTTGACGCCAGGTCGAATTTGGCGCGCTCCGATGTCGTCGACAGTAGCG
ACGACTCGTCCCCAACGAACGTCAATGGCAAGGGAAAGGGGAAGGCGAGG
ACCGAAAGTGTCGGCGGAAGGAGGAACCCCCACCAGGCAAGTGCCGAAAA
GGCAAAAGGGAAGGGATACCAGTTGTGGGCCCTCGGCTTCTTGCAGCGAG
CCTGCTCGTATCGTGACATCCCGAGAATGTCACAACAAAAATCGAAGGAG
GCGATAGCGGAGGCG
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