mRNA_P-littoralis_Contig1335.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1335.4.1
Unique NamemRNA_P-littoralis_Contig1335.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1335.4.1 vs. uniprot
Match: A0A6H5K8V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V9_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.950e-18
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    7 RLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTD 162
            RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD
Sbjct:  280 RLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTD 331
[Close]
BLAST of mRNA_P-littoralis_Contig1335.4.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.190e-18
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    7 RLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTD 162
            RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD
Sbjct:  603 RLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTD 654
[Close]
BLAST of mRNA_P-littoralis_Contig1335.4.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.190e-18
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    7 RLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTD 162
            RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD
Sbjct: 1051 RLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTD 1102
[Close]
BLAST of mRNA_P-littoralis_Contig1335.4.1 vs. uniprot
Match: A0A6H5K7K1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K1_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.000e-17
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    7 RLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTD 162
            RLP TLS+++LSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD
Sbjct:  410 RLPMTLSTVTLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTD 461
[Close]
BLAST of mRNA_P-littoralis_Contig1335.4.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 6.780e-6
Identity = 22/31 (70.97%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    7 RLPATLSSMSLSLIRKWARISWLYVEAYATG 99
            RLP TLS++SLSL RKWAR+SWLY+ AY+ G
Sbjct:  486 RLPMTLSTVSLSLCRKWARVSWLYIYAYSHG 516
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1335.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K8V9_9PHAE2.950e-1873.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M3_9PHAE4.190e-1873.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7W4_9PHAE4.190e-1873.08Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7K1_9PHAE1.000e-1771.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K344_9PHAE6.780e-670.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1335contigP-littoralis_Contig1335:9987..10151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789614.1873236-CDS-P-littoralis_Contig1335:9986..101211680789614.1873236-CDS-P-littoralis_Contig1335:9986..10121Pylaiella littoralis U1_48CDSP-littoralis_Contig1335 9987..10121 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789614.2043035-UTR-P-littoralis_Contig1335:10121..101511680789614.2043035-UTR-P-littoralis_Contig1335:10121..10151Pylaiella littoralis U1_48UTRP-littoralis_Contig1335 10122..10151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1335.4.1prot_P-littoralis_Contig1335.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1335 9987..10121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1335.4.1

>prot_P-littoralis_Contig1335.4.1 ID=prot_P-littoralis_Contig1335.4.1|Name=mRNA_P-littoralis_Contig1335.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=45bp
MSLSLIRKWARISWLYVEAYATGLDGYMQYRDLKKWTCHRSSTDR
back to top

mRNA from alignment at P-littoralis_Contig1335:9987..10151-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1335.4.1 ID=mRNA_P-littoralis_Contig1335.4.1|Name=mRNA_P-littoralis_Contig1335.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig1335:9987..10151- (Pylaiella littoralis U1_48)
CGAAAACGACTCCCTGCCACTCTTAGCTCCATGTCTCTGTCGCTCATTCG
CAAGTGGGCCCGGATTTCGTGGCTCTATGTTGAGGCGTATGCCACGGGGC
TCGACGGTTACATGCAATACAGAGACCTAAAGAAGTGGACGTGCCACCGC
TCATCTACTGATCGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1335:9987..10151-

>mRNA_P-littoralis_Contig1335.4.1 ID=mRNA_P-littoralis_Contig1335.4.1|Name=mRNA_P-littoralis_Contig1335.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=135bp|location=Sequence derived from alignment at P-littoralis_Contig1335:9987..10151- (Pylaiella littoralis U1_48)
ATGTCTCTGTCGCTCATTCGCAAGTGGGCCCGGATTTCGTGGCTCTATGT
TGAGGCGTATGCCACGGGGCTCGACGGTTACATGCAATACAGAGACCTAA
AGAAGTGGACGTGCCACCGCTCATCTACTGATCGG
back to top