mRNA_P-littoralis_Contig1332.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1332.18.1
Unique NamemRNA_P-littoralis_Contig1332.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1332.18.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.160e-28
Identity = 78/198 (39.39%), Postives = 107/198 (54.04%), Query Frame = 1 
Query:   64 LPLVTNDLSAMLLTTIGNCSKENSRHLAMVQNAAVYYQCLVTKRKIGTTNTEGRDAHAKQNYLDHTVPGFFAWWNKSCKLPIPTWLTPKLMGQSTLTDQTNRLYTVDGAIW---SKYSEAGKIIKRDFNLLWDSFRTADGELPSGQQETDAWGNLQDGLYYTWKKENEKVKMRNKRNKVAKNNPVVLTGGEGNQTLSG 648
            L L  N+ S  LL  + + +K+  +HL+++QNAA YYQCLVTKR+ GT +T+ RDAHA+ NY + TVP F  WW        P+WLT  LMG +T  D  +   TV    W   S Y  A +            F   DG+LPSG Q  D W NLQ  L++  ++   + K     N  AK+ P+VLTG +  +T +G
Sbjct:    6 LLLPRNEHSDDLLEYLSH-TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQQRDAHARTNYKNFTVPSFLCWWKTVVIQTPPSWLTQDLMGMTTGNDSGSTTPTV----WFGPSTYRVAVRSGGTSTESGTGDF-LVDGDLPSGMQAEDIWENLQLYLWFEDRRTAGRKKEVAAANARAKSQPIVLTGDDDGETEAG 197
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BLAST of mRNA_P-littoralis_Contig1332.18.1 vs. uniprot
Match: A0A6H5KNK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK2_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 6.280e-5
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   64 LPLVTNDLSAMLLTTIGNCSKENSRHLAMVQNAAVYYQCLVTKRKIGTTNTE 219
            L L  N+ S  LL  + + +K+  +HL+++QNAA YYQCLVTKR+ GT +T+
Sbjct:    6 LLLPRNEHSHDLLEYLSH-TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQ 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1332.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE4.160e-2839.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNK2_9PHAE6.280e-548.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1332contigP-littoralis_Contig1332:25292..27477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size716
Hectar predicted targeting categoryother localisation
Exons3
Cds size714
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789613.7321653-CDS-P-littoralis_Contig1332:25291..256521680789613.7321653-CDS-P-littoralis_Contig1332:25291..25652Pylaiella littoralis U1_48CDSP-littoralis_Contig1332 25292..25652 +
1680789613.744718-CDS-P-littoralis_Contig1332:26260..263541680789613.744718-CDS-P-littoralis_Contig1332:26260..26354Pylaiella littoralis U1_48CDSP-littoralis_Contig1332 26261..26354 +
1680789613.7539165-CDS-P-littoralis_Contig1332:27217..274761680789613.7539165-CDS-P-littoralis_Contig1332:27217..27476Pylaiella littoralis U1_48CDSP-littoralis_Contig1332 27218..27476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1332.18.1prot_P-littoralis_Contig1332.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1332 25292..27476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1332.18.1

>prot_P-littoralis_Contig1332.18.1 ID=prot_P-littoralis_Contig1332.18.1|Name=mRNA_P-littoralis_Contig1332.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=238bp
VYAHAGNTRTPSLSSMEEIFPLPLVTNDLSAMLLTTIGNCSKENSRHLAM
VQNAAVYYQCLVTKRKIGTTNTEGRDAHAKQNYLDHTVPGFFAWWNKSCK
LPIPTWLTPKLMGQSTLTDQTNRLYTVDGAIWSKYSEAGKIIKRDFNLLW
DSFRTADGELPSGQQETDAWGNLQDGLYYTWKKENEKVKMRNKRNKVAKN
NPVVLTGGEGNQTLSGESTAARDKAQQQSEEEVAAARQ
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mRNA from alignment at P-littoralis_Contig1332:25292..27477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1332.18.1 ID=mRNA_P-littoralis_Contig1332.18.1|Name=mRNA_P-littoralis_Contig1332.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2186bp|location=Sequence derived from alignment at P-littoralis_Contig1332:25292..27477+ (Pylaiella littoralis U1_48)
GTGTATGCACACGCCGGCAACACGCGCACGCCCTCTCTCAGCAGCATGGA
GGAAATTTTTCCTCTACCCCTGGTCACTAATGACCTCTCGGCTATGCTGC
TCACAACCATCGGGAATTGTTCCAAGGAGAACTCGAGGCATCTAGCGATG
GTTCAAAACGCGGCTGTGTACTATCAGTGCCTCGTCACGAAGCGCAAGAT
CGGCACCACCAACACCGAAGGACGGGATGCGCACGCAAAGCAGAACTACC
TCGACCACACCGTTCCTGGTTTCTTTGCCTGGTGGAATAAGTCCTGCAAG
CTGCCGATTCCTACGTGGCTGACGCCGAAGCTCATGGGCCAGAGCACGCT
GACTGACCAAAGTGAGATGCGGAAAGATTTGTAGGGTGGAGCAGCTGCAG
CAGCAGCTAGCTGCTGCAGCAGCAGCTGCTGCAGCGGCAGCAGTAACAGC
AGTACCGGTACCAGTGTTTGCGTGCCACAAACTCTCAAGCAGGCTCACAT
CAGCCATATTTCGCCTCTGTGCTGTTTCAGCCTTCGATTGCGAGTTCATC
TGCTGGCACATCCAATAGGGTTTGCTGCACACATCATATCTTGGAATAAC
TTCGTCGAGAAAGAAAAAGAAACAACAGCAGTACTGCTGTATCTGATACG
TACTCCAGTATAATTTGCTCGTTCCCGAGGACAACAGTACAACAGCAGCA
GTATATACAAGACCACGCCTCTGCATCACGAACGACGCACATCCGACGAA
CCGTGTGCATTGTGCGGCAACACTCGTCTACCTGATGTATAATTAATTAT
TTACATAGTTTTGTTTGTATTGCTGCCCAGTGCTTTGGCTTGTTCATAGC
TTGAAGCCCTTTGCCGAGGGAGACGCTCGAAACCATGCCGACATATCAGT
GCTTGACGAATAACCCTCCACCCCGTTGGCCTCCTCGTTGCGTCCCGTCA
CGTTGTTGCCTCCGTGCAGCTAACAGGCTGTACACAGTTGATGGTGCTAT
CTGGAGCAAGTACTCGGAAGCTGGCAAAATTATTAAGAGGGACTTCAACC
TCCTCTGGGACAGGTGAGCGGTGATGACGGTGTTCCCAAGTACTTTTGTA
GACCTGTTTGCCAGATACAATCGACAAATCAAGATCGAGGTTATAGGTCC
TAGCGCAACAGACCTCGTGGTGTGATACGGATGACACGGCAGGGTTTGCC
TGCAGATCAACGCAATGAACATGAATATAGGTACAGGCACCACCCGTTTG
AGAAGCCGAAGACATCTATTGATGAGTGACTAGCGGTCATGTAGGCGATG
GCGCAGGTCCGAGCCCGCATCATATACATGGTCGCTGCAAGATGGGTGAC
ACGCACTAAATACGACCGACAAACAGCAGCAGTAGACAGCATCAGGGTGC
TCTGTTTTCTCGTCTGCTTCGCACGTTTGTGAGCCAATGTTGAAGAATGG
CTCCAAATACCACTAATGCCACGAAAGTTTTTTCCTTTTTCTCGCAAAAG
GGGTGTAAACCTCCGGTTGGTCGCTGCATATGTGCCATGTCTCTTGTTGC
GTTAAATGATCTCCACGAGTAAACGTTACCGCTGCAAGTGTTCCGCCAAT
TTCTGTGCGTTCTTGCGTACCCAACTTCACGCCCCTAGCCGCCAAGGTAT
TTGCGTGTGTGCCAAACACTTTGGTCTGGCTCTCTACGCTCTCGTTCACG
TGATGATTGGTGTACATTTTCTCTACTGGTAGTCGACTCGAGGATCTGAC
TTTTGTTTTGCACGTTTGACAATTCCAAGTACCACGCGCAGCTCATACTA
TCGTGCGTCGGAGCTCGGACCATCTATATCTCAATCTGTTGGTCGAAGAC
GACACGGCATGCTCGCCAGAAAATTTACCAAAGGTTTTTTGTTGTCGAAT
CCTCTGCGTTCCGTGTTCGTTGCCAGTTTTAGGACAGCAGATGGTGAACT
TCCTTCAGGACAGCAGGAGACCGACGCCTGGGGAAACCTGCAGGACGGGC
TATACTACACCTGGAAGAAAGAAAACGAGAAGGTGAAGATGCGGAACAAG
CGAAACAAAGTGGCGAAGAATAATCCCGTGGTGTTGACGGGAGGCGAGGG
GAACCAAACACTGTCCGGGGAGTCGACGGCAGCCCGGGATAAGGCACAGC
AGCAGTCGGAGGAGGAGGTGGCTGCAGCAAGGCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1332:25292..27477+

>mRNA_P-littoralis_Contig1332.18.1 ID=mRNA_P-littoralis_Contig1332.18.1|Name=mRNA_P-littoralis_Contig1332.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=714bp|location=Sequence derived from alignment at P-littoralis_Contig1332:25292..27477+ (Pylaiella littoralis U1_48)
GTGTATGCACACGCCGGCAACACGCGCACGCCCTCTCTCAGCAGCATGGA
GGAAATTTTTCCTCTACCCCTGGTCACTAATGACCTCTCGGCTATGCTGC
TCACAACCATCGGGAATTGTTCCAAGGAGAACTCGAGGCATCTAGCGATG
GTTCAAAACGCGGCTGTGTACTATCAGTGCCTCGTCACGAAGCGCAAGAT
CGGCACCACCAACACCGAAGGACGGGATGCGCACGCAAAGCAGAACTACC
TCGACCACACCGTTCCTGGTTTCTTTGCCTGGTGGAATAAGTCCTGCAAG
CTGCCGATTCCTACGTGGCTGACGCCGAAGCTCATGGGCCAGAGCACGCT
GACTGACCAAACTAACAGGCTGTACACAGTTGATGGTGCTATCTGGAGCA
AGTACTCGGAAGCTGGCAAAATTATTAAGAGGGACTTCAACCTCCTCTGG
GACAGTTTTAGGACAGCAGATGGTGAACTTCCTTCAGGACAGCAGGAGAC
CGACGCCTGGGGAAACCTGCAGGACGGGCTATACTACACCTGGAAGAAAG
AAAACGAGAAGGTGAAGATGCGGAACAAGCGAAACAAAGTGGCGAAGAAT
AATCCCGTGGTGTTGACGGGAGGCGAGGGGAACCAAACACTGTCCGGGGA
GTCGACGGCAGCCCGGGATAAGGCACAGCAGCAGTCGGAGGAGGAGGTGG
CTGCAGCAAGGCAA
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