mRNA_P-littoralis_Contig1332.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1332.9.1
Unique NamemRNA_P-littoralis_Contig1332.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1332.9.1 vs. uniprot
Match: A0A6H5K8T4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.100e-9
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:    1 QMALVAAIEEKNIAVWEAKDGGGIRLYKNGHETGLFIGNSEDIGEFVHLLYSN-GNCTISKLQDGTYPVRN--SRVTSQATSNHFDNIWVP 264
            Q+ALVAA++  NIAVWEAK GGG+R+ + G  TG+F+G+     E++HL+Y+  G    +    GT  VR   S   ++   NH   I +P
Sbjct:  233 QLALVAAVKRCNIAVWEAKTGGGLRIVEIGDITGIFVGDLNR-DEYLHLVYNYFGGYKAATYAAGTATVRTPTSSNVAERKLNHLSAIVIP 322
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1332.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8T4_9PHAE6.100e-940.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1332contigP-littoralis_Contig1332:8864..9136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size273
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789613.6290455-UTR-P-littoralis_Contig1332:8863..88661680789613.6290455-UTR-P-littoralis_Contig1332:8863..8866Pylaiella littoralis U1_48UTRP-littoralis_Contig1332 8864..8866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789613.6403708-CDS-P-littoralis_Contig1332:8866..91361680789613.6403708-CDS-P-littoralis_Contig1332:8866..9136Pylaiella littoralis U1_48CDSP-littoralis_Contig1332 8867..9136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1332.9.1prot_P-littoralis_Contig1332.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1332 8867..9136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1332.9.1

>prot_P-littoralis_Contig1332.9.1 ID=prot_P-littoralis_Contig1332.9.1|Name=mRNA_P-littoralis_Contig1332.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MALVAAIEEKNIAVWEAKDGGGIRLYKNGHETGLFIGNSEDIGEFVHLLY
SNGNCTISKLQDGTYPVRNSRVTSQATSNHFDNIWVPSTL
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mRNA from alignment at P-littoralis_Contig1332:8864..9136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1332.9.1 ID=mRNA_P-littoralis_Contig1332.9.1|Name=mRNA_P-littoralis_Contig1332.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig1332:8864..9136+ (Pylaiella littoralis U1_48)
CAGATGGCGCTGGTTGCAGCAATCGAAGAGAAAAACATCGCGGTGTGGGA
AGCGAAGGACGGCGGGGGGATCCGGTTGTACAAGAACGGTCACGAGACAG
GTTTGTTCATCGGAAATTCCGAAGACATCGGCGAATTTGTGCATCTGTTG
TATAGCAACGGAAACTGCACCATTTCGAAGCTGCAGGACGGAACGTACCC
TGTGCGCAATTCTCGCGTCACGAGTCAGGCCACGAGCAACCATTTCGACA
ATATCTGGGTTCCCTCGACCTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1332:8864..9136+

>mRNA_P-littoralis_Contig1332.9.1 ID=mRNA_P-littoralis_Contig1332.9.1|Name=mRNA_P-littoralis_Contig1332.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig1332:8864..9136+ (Pylaiella littoralis U1_48)
ATGGCGCTGGTTGCAGCAATCGAAGAGAAAAACATCGCGGTGTGGGAAGC
GAAGGACGGCGGGGGGATCCGGTTGTACAAGAACGGTCACGAGACAGGTT
TGTTCATCGGAAATTCCGAAGACATCGGCGAATTTGTGCATCTGTTGTAT
AGCAACGGAAACTGCACCATTTCGAAGCTGCAGGACGGAACGTACCCTGT
GCGCAATTCTCGCGTCACGAGTCAGGCCACGAGCAACCATTTCGACAATA
TCTGGGTTCCCTCGACCTTG
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