mRNA_P-littoralis_Contig1332.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1332.11.1
Unique NamemRNA_P-littoralis_Contig1332.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1332.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1332contigP-littoralis_Contig1332:11554..11941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789613.565966-UTR-P-littoralis_Contig1332:11553..115751680789613.565966-UTR-P-littoralis_Contig1332:11553..11575Pylaiella littoralis U1_48UTRP-littoralis_Contig1332 11554..11575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789613.5755768-CDS-P-littoralis_Contig1332:11575..116361680789613.5755768-CDS-P-littoralis_Contig1332:11575..11636Pylaiella littoralis U1_48CDSP-littoralis_Contig1332 11576..11636 +
1680789613.5858493-CDS-P-littoralis_Contig1332:11858..119411680789613.5858493-CDS-P-littoralis_Contig1332:11858..11941Pylaiella littoralis U1_48CDSP-littoralis_Contig1332 11859..11941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1332.11.1prot_P-littoralis_Contig1332.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1332 11576..11941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1332.11.1

>prot_P-littoralis_Contig1332.11.1 ID=prot_P-littoralis_Contig1332.11.1|Name=mRNA_P-littoralis_Contig1332.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=48bp
MAASLVRLQARVQRDDGDGKGLTTVWNDSLHVPDAGSPAAMYFPCHQR
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mRNA from alignment at P-littoralis_Contig1332:11554..11941+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1332.11.1 ID=mRNA_P-littoralis_Contig1332.11.1|Name=mRNA_P-littoralis_Contig1332.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=388bp|location=Sequence derived from alignment at P-littoralis_Contig1332:11554..11941+ (Pylaiella littoralis U1_48)
TGGCGTCGGCTCGAAACACTTCATGGCAGCCAGTCTTGTGCGACTGCAAG
CTCGAGTGCAAAGAGACGACGGTGACGGAAAAGGTGAGCACGCACTGTGA
ATATTTGCTTCGCCGTTATTAGTCTTTGTCGCAATTCGGTTGGAATTCGC
CGATCAGTTCTATGAATGGTTTCTGAAGCGGCCTTGATGCTTTTCGCTCG
AGTAATTGATATTTGGGCATTATCCGAAGGGAATTCTGTTACGATAGGTA
TCTTATACAGCGGCGTTTTTTCGCGCCCCTCCCCCCCCGCTGCCGATTCG
TACAGGCCTCACCACTGTTTGGAATGACAGTCTACACGTGCCCGACGCAG
GGTCGCCTGCAGCCATGTATTTTCCATGTCATCAAAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1332:11554..11941+

>mRNA_P-littoralis_Contig1332.11.1 ID=mRNA_P-littoralis_Contig1332.11.1|Name=mRNA_P-littoralis_Contig1332.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=144bp|location=Sequence derived from alignment at P-littoralis_Contig1332:11554..11941+ (Pylaiella littoralis U1_48)
ATGGCAGCCAGTCTTGTGCGACTGCAAGCTCGAGTGCAAAGAGACGACGG
TGACGGAAAAGGCCTCACCACTGTTTGGAATGACAGTCTACACGTGCCCG
ACGCAGGGTCGCCTGCAGCCATGTATTTTCCATGTCATCAAAGA
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