mRNA_P-littoralis_Contig1330.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1330.4.1
Unique NamemRNA_P-littoralis_Contig1330.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1330.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1330contigP-littoralis_Contig1330:23993..24498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size506
Hectar predicted targeting categorysignal peptide
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789613.2399158-UTR-P-littoralis_Contig1330:23992..240281680789613.2399158-UTR-P-littoralis_Contig1330:23992..24028Pylaiella littoralis U1_48UTRP-littoralis_Contig1330 23993..24028 +
1680789613.272088-UTR-P-littoralis_Contig1330:24373..244981680789613.272088-UTR-P-littoralis_Contig1330:24373..24498Pylaiella littoralis U1_48UTRP-littoralis_Contig1330 24374..24498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789613.2551618-CDS-P-littoralis_Contig1330:24028..243731680789613.2551618-CDS-P-littoralis_Contig1330:24028..24373Pylaiella littoralis U1_48CDSP-littoralis_Contig1330 24029..24373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1330.4.1prot_P-littoralis_Contig1330.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1330 24029..24373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1330.4.1

>prot_P-littoralis_Contig1330.4.1 ID=prot_P-littoralis_Contig1330.4.1|Name=mRNA_P-littoralis_Contig1330.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MSISSRYSPRLLCLDSVHGIFLSFKWLMLPTALGLVIRSATFVPFSCTSS
DICVSFLHRPGRSCAFRSWNFAGSDVLPPPRPRPRQPAGIMKKALLCTNK
SERRLLTGAGAPNY*
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mRNA from alignment at P-littoralis_Contig1330:23993..24498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1330.4.1 ID=mRNA_P-littoralis_Contig1330.4.1|Name=mRNA_P-littoralis_Contig1330.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=506bp|location=Sequence derived from alignment at P-littoralis_Contig1330:23993..24498+ (Pylaiella littoralis U1_48)
TTCGAGTTCCTTTTGAGTCTCTCCCTTTTCGTCGTCATGTCGATCTCGTC
TCGGTACAGCCCTCGTCTTTTGTGTTTGGATTCAGTTCATGGAATTTTCC
TTTCTTTCAAGTGGCTAATGCTTCCAACCGCCCTCGGGCTCGTTATCCGT
TCAGCCACTTTTGTGCCATTTTCTTGTACTTCTTCGGACATCTGCGTTAG
CTTTCTACACCGCCCTGGCCGTTCGTGCGCCTTCCGGAGCTGGAACTTCG
CTGGATCAGACGTTCTACCTCCGCCGCGGCCCAGACCACGCCAGCCGGCG
GGAATTATGAAAAAAGCATTACTGTGTACAAATAAAAGCGAACGTCGTCT
ACTAACCGGAGCCGGAGCTCCGAACTATTAGATTACAATTTAGTGAATGA
AGCGAACGTTGTCAACCCGAAGCCGGCGCTCCGTGCCCGCAACATTACTG
CTTTCGACTCATCTGAGGGTTTTCGCGTTGTTGTTTAGTTTGCCTTGGCT
GCGACT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1330:23993..24498+

>mRNA_P-littoralis_Contig1330.4.1 ID=mRNA_P-littoralis_Contig1330.4.1|Name=mRNA_P-littoralis_Contig1330.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig1330:23993..24498+ (Pylaiella littoralis U1_48)
ATGTCGATCTCGTCTCGGTACAGCCCTCGTCTTTTGTGTTTGGATTCAGT
TCATGGAATTTTCCTTTCTTTCAAGTGGCTAATGCTTCCAACCGCCCTCG
GGCTCGTTATCCGTTCAGCCACTTTTGTGCCATTTTCTTGTACTTCTTCG
GACATCTGCGTTAGCTTTCTACACCGCCCTGGCCGTTCGTGCGCCTTCCG
GAGCTGGAACTTCGCTGGATCAGACGTTCTACCTCCGCCGCGGCCCAGAC
CACGCCAGCCGGCGGGAATTATGAAAAAAGCATTACTGTGTACAAATAAA
AGCGAACGTCGTCTACTAACCGGAGCCGGAGCTCCGAACTATTAG
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