mRNA_P-littoralis_Contig133.100.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig133.100.1
Unique NamemRNA_P-littoralis_Contig133.100.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig133.100.1 vs. uniprot
Match: A0A6H5JB46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB46_9PHAE)

HSP 1 Score: 462 bits (1188), Expect = 1.740e-145
Identity = 319/694 (45.97%), Postives = 377/694 (54.32%), Query Frame = 2 
Query:  146 HAMRS-DHVWGDGSTTSACV-LEWP-PRHGDHFLPDSSAPAGQTRQTHILRCHAPNGVDGCSSSNEVLYLPPEAEEDVRGNVVLFPGDVQDLHRRMLSKGHREFSDYCLESTAQGLATKFPGHAVWVVLPKTHVHGALASYDNFGKTDWASGGAVLEYLVDGSACKHLEALLNTAADELQSLGRNGACGVMSDRRPDVSLPLTLVGFSKGAVVLNQLVTELACEPAPAAASPTTPSR-GSKRSDSRDDGHPVRFKKNRTGKRLRVCTSTSIRYDRSECDGGG--RLASSEGALTNPPSPADDGG-GGITVSSSWPMSWEGERGE------AGMHTEISHAEVEDGRRSTQDSTGSLWSRLWSTFGKSRFSTKTFSLISAGSSTNGSRTDEDLDEASGG-------------------------------------------------KWKATHTDEDEESLLNPSSPSPRTASACGQRRNRRQPSSTSFSAAKVDDDARMFGRRPHRPNAGSAAQRLFDRVAAIHWVDGGNGDLAGGSFPTNECSLARLAALPNLAIRVHGTPYQWGNHCRPFLAFEADAFVASVEGFRRALIVREGSGIAATNSTKSRVVAAGSRDTEHPRGAASGKANDVGCDCSVAGEGEIELESAGNGDSKGDDRVVAG--CDVKRLLYFDGEQPSLENHFRVLTELSTE 2035
            HAMRS    W D S     V + WP  +                    ++ C    G++G   SNEVLYL    +E+ RGNVVLFPGDVQDLH RM+S GH EFSDYC+ESTA+ LA +FPGHAVWVVLPKTHVHGALASYDNF KTDWA+GGAVLEYL DGSAC+HLEALL  AAD +     +  CGV +  RP++SLPLTLVGFSKG VVLNQLVTELAC P PAAA P  P    S RSD   DG  ++   NR  KR RV  S   R   S C GG   RLA +EG LTNPPSPADDG     T S +WPM WEG R +       G      H  V+DG +  QD TGSLWSRLWS FG SR  T+T S  S  S+   S TDE  ++                                                     KW+      ++       S S   ++  G++ + R  ++T      +     +  RR        AA RLF RVAA+HWVDG N  +A G+FPTN  SLARLAA  NL+IRVHGTPYQW +  RP+LA EA AF+ASVEGFRRAL  RE     AT S+ +    +G  D       ++                    E  G   SKG    V G  CDVKRL+YF+ EQPSLENHFRVL +L+TE
Sbjct:   12 HAMRSASQAWIDESVDGDGVSVAWPGQQQXXXXXXXXXXXXXXXXXXXVVLCR---GIEG--GSNEVLYL---GQEEARGNVVLFPGDVQDLHHRMISVGHEEFSDYCVESTARTLARRFPGHAVWVVLPKTHVHGALASYDNFAKTDWATGGAVLEYLPDGSACEHLEALLGAAADAVHQ--EDDRCGVTTSHRPNISLPLTLVGFSKGVVVLNQLVTELACSPPPAAAEPALPKTYSSTRSDV--DGDGIKLAGNR--KRSRVSMSNGRRCS-SSCGGGSGERLACNEGDLTNPPSPADDGDIATTTASGNWPMGWEGFRDQERREDAGGASNGTLHDGVQDGYKPHQDKTGSLWSRLWSAFGMSRLKTRTISSTSLPSA---SSTDEAPNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGPLKWRG-----EKRXXXXXRSTSISGSTPPGEQGDSRGGNTTCVGVGTLRGGDVVCERRRDDDGGSGAANRLFGRVAAVHWVDGANAAVA-GAFPTNLRSLARLAAFTNLSIRVHGTPYQWSSQYRPWLASEATAFLASVEGFRRALRAREEGSAFATKSSTTTGRMSGGGDGGEVEVFSTDXXXXXXXXXXXXXXXXXXSEGFGGEGSKGGGSRVGGAACDVKRLVYFENEQPSLENHFRVLADLNTE 681
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BLAST of mRNA_P-littoralis_Contig133.100.1 vs. uniprot
Match: D7FGX1_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX1_ECTSI)

HSP 1 Score: 474 bits (1221), Expect = 1.310e-142
Identity = 316/644 (49.07%), Postives = 373/644 (57.92%), Query Frame = 2 
Query:  266 TRQTHILRCHAPNGVDGCSSSNEVLYLPPEAEEDVRGNVVLFPGDVQDLHRRMLSKGHREFSDYCLESTAQGLATKFPGHAVWVVLPKTHVHGALASYDNFGKTDWASGGAVLEYLVDGSACKHLEALLNTAADELQSLGRNGACGVMSDRRPDVSLPLTLVGFSKGAVVLNQLVTELACEPAPAAASPTTP-SRGSKRSDSRDDGHPVRFKKNRTGKRLRVCTSTSIRYDRSECDGGG--RLASSEGALTNPPSPADDGGGGITVSSS-WPMSWEGERGE------AGMHTEISHAEVEDGRRSTQDSTGSLWSRLWSTFGKSRFSTKTFSLISAGSSTNGSRTDEDLDEASGG------------------------------------------KWKATHTDEDEESLLNPSSPSPRTASACGQRRNRRQPSSTSFSAAKVDDDARMFGRRPHRPNAGSAAQRLFDRVAAIHWVDGGNGDLAGGSFPTNECSLARLAALPNLAIRVHGTPYQWGNHCRPFLAFEADAFVASVEGFRRALIVREGSGIAATNSTKSRVVAAGSRDTEHPRGAASGKANDVGCDCSVAGEGEIELESAGNGDSKGDDRVVAGC--DVKRLLYFDGEQPSLENHFRVLTELSTE 2035
            +R+   L+  + + + G   SNEVLYL    +E+ RGNVVLFPGDVQDLH RM+S GH EFSDYC+ESTA+ LA +FPGHAVWVVLPKTHVH ALASYDNF KTDWA+GGAVLEYL DGSAC+HLEALL  AAD +     +  CG  + RRPD+SLPLTLVGFSKG VVLNQLVTELAC P PAAA+P  P +  S RSD   DG  ++   NR  KR RV  S S R   S C GGG  RLA SEG LTNPPSPADDG  G T++SS WPM WEG R +       G      H  ++DG +  QD TGSLWSRLWS FG SR  T+T S  S  S+   S TDE  +                                               KW+            + S  +P      G++ + R  ++T      +     +   R    N   AA RLF RVAA+HWVDG N  +A GSFPTN  SLARLAALPNL+IRVHGTPYQW +  RP+LA EA AF+ASVEGFRRAL  RE     AT S+ +    +G  D       ++  A               E E +G   SKG    V G   DVKRL+YF+ EQPSLENHFRVL +L+TE
Sbjct:  799 SRKARYLKGGSESSIGG---SNEVLYL---GQEEARGNVVLFPGDVQDLHHRMISVGHEEFSDYCVESTARTLARRFPGHAVWVVLPKTHVHSALASYDNFAKTDWATGGAVLEYLPDGSACEHLEALLGAAADAVHQ--EDDRCGDTTSRRPDISLPLTLVGFSKGVVVLNQLVTELACSPPPAAAAPALPKTNSSTRSDV--DGDGIKLAGNR--KRSRVSMSNSRRCS-SSCGGGGGERLACSEGDLTNPPSPADDGDIGATMASSNWPMGWEGGRDKERREDAGGTGNGTPHDGIQDGYKPHQDKTGSLWSRLWSAFGMSRLKTRTISSTSLPSA---SSTDESPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGPLKWRGEKRXXXXNRPTSISGSTPP-----GEQGDSRGGNTTCIGGGTLSGCDAVC-ERGRDDNGSCAANRLFGRVAAVHWVDGANAAVA-GSFPTNLRSLARLAALPNLSIRVHGTPYQWSSQYRPWLASEATAFLASVEGFRRALRSREEGSAFATKSSTTASRMSGGGDGGEVGVFSTDAAARXXXXXXXXXXXXXESEGSGGEGSKGGGSRVGGAAFDVKRLVYFENEQPSLENHFRVLADLNTE 1419
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BLAST of mRNA_P-littoralis_Contig133.100.1 vs. uniprot
Match: A0A835ZEC5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC5_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.800e-28
Identity = 85/201 (42.29%), Postives = 107/201 (53.23%), Query Frame = 2 
Query:  230 HFLPDSSAPAGQTR---QTHILRCHAPNGVDGCSSSNEVLYLPPEAEEDVRGNVVLFPGDVQDLHRRMLSKGHR--EFSDYCLESTAQGLAT-KFPGHAVWVVLPKTHVHGALASYDNFGKTDWASGGAVLEYLVDGSACKHLEALLNTAADELQSLGRNGACGVMSDRRPDVSLPLTLVGFSKGAVVLNQLVTELACEPA 814
            HFLP  +A A  +    Q    R  A  G+ G  ++N V+Y PP       G+V +F GD+Q   R ++S   +  E+  YCLE+TA  LA  KFPGH VWV+ P  H HGA A Y+NF        GA   Y   G A  HLE LL +A   +         G+ S R PD +LP+TLVGFSKG   LNQLVTEL  + A
Sbjct:   22 HFLPYKTAVAASSSGHSQDGTQRITA-TGLHG--AANTVVYCPPTGAAAPCGHVCVFAGDLQ-AERNIMSASRKASEWGAYCLEATATNLARHKFPGHHVWVIKPSRHAHGAFACYENFSSHTCRHSGAFTWYDPHGFASLHLELLLQSAFSHV---------GLDSGRLPDPTLPITLVGFSKGGGALNQLVTELGADTA 209
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BLAST of mRNA_P-littoralis_Contig133.100.1 vs. uniprot
Match: A0A225VJI9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VJI9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.710e-21
Identity = 64/157 (40.76%), Postives = 85/157 (54.14%), Query Frame = 2 
Query:  329 NEVLYLPPEAEEDVRGNVVLFPGDVQDLHRRMLSKGHREFSDYCLESTAQGLATKFPGHAVWVVLPKTHVHGALASYDNFGKTDWASGGAVLEYLVDGSACKHLEALLNTAADELQSLGRNGACGVMSDRRPDVSLPLTLVGFSKGAVVLNQLVTEL 799
            N++L   P +    R NV+ FPGDVQD    M      ++SDY  E+ A+ L+ KF    VWVV P    HGA +S+DNF +T+    GA  EY     A KHL +L+      L+  G N +           +LP+ L+GFSKG +VLNQLVTEL
Sbjct:   45 NDLLLSVPTSAT-ARCNVIFFPGDVQDFEAAMKIGPFADYSDYAYEAVAELLSDKFGACNVWVVRPSRFKHGAYSSFDNFVRTN--EYGAATEYDPTAYATKHLASLMQNTQATLRRQGVNVS----------TALPMHLLGFSKGGIVLNQLVTEL 188
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BLAST of mRNA_P-littoralis_Contig133.100.1 vs. uniprot
Match: H3HB66_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB66_PHYRM)

HSP 1 Score: 102 bits (255), Expect = 4.640e-20
Identity = 64/155 (41.29%), Postives = 82/155 (52.90%), Query Frame = 2 
Query:  338 LYLPPEAEEDVRGNVVLFPGDVQDLHRRMLSKGHREFSDYCLESTAQGLATKFPGHA-VWVVLPKTHVHGALASYDNFGKTDWASGGAVLEYLVDGSACKHLEALLNTAADELQSLGRNGACGVMSDRRPDVSLPLTLVGFSKGAVVLNQLVTEL 799
            LYL        R NV+ FPGDVQD    ML     ++SDY  E+ A+ L+ KF     VWVV P    HGA +S+DNF  T+  + GA  EY     A KHL +L+      L+  G N +           +L + L+GFSKG +VLNQLVTEL
Sbjct:   54 LYLSVPKSATARCNVIFFPGDVQDFKAAMLDGPFADYSDYAYEAVAELLSEKFGDTCNVWVVRPSRFKHGAYSSFDNFVTTN--NYGAATEYDTTAYATKHLASLMQNTQATLRRQGVNVS----------TALSMHLLGFSKGGIVLNQLVTEL 196
[Close]
BLAST of mRNA_P-littoralis_Contig133.100.1 vs. uniprot
Match: A0A484E2X1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E2X1_BRELC)

HSP 1 Score: 102 bits (253), Expect = 2.150e-19
Identity = 71/196 (36.22%), Postives = 96/196 (48.98%), Query Frame = 2 
Query:  239 PDSSAPAGQTRQTH--------ILRCHAPNGVDGCSSSNEVLYLPPEAEEDVRGNVVLFPGDVQDLHRRMLSKGHREFSDYCLESTAQGLATKFPGHA-VWVVLPKTHVHGALASYDNFGKTDWASGGAVLEYLVDGSACKHLEALLNTAADELQSLGRNGACGVMSDRRPDVSLPLTLVGFSKGAVVLNQLVTEL 799
            P  S+P   T  T+         LR  +   +D     NE+  L P        N++ FPGDVQD    M +    ++SDY  ES A+ L+ KF     VW+V P    HGA +S+DNF  T+    GA  +Y   GS+ KHL +L+      L+  G N +            LP+ L+GFSKG +VLNQLVTEL
Sbjct:   14 PSESSPPSHTSPTNHKNGFKRMSLRLRSRGWLD---RENELFILIPR-NATATCNIIFFPGDVQDFQTNMATGPFADYSDYAYESVAELLSKKFGNTCNVWIVRPHRFKHGAYSSFDNFLTTN--EYGAATKYDATGSSTKHLASLMQNTQILLRRQGVNVS----------TVLPIRLLGFSKGGIVLNQLVTEL 193
[Close]
BLAST of mRNA_P-littoralis_Contig133.100.1 vs. uniprot
Match: A0A6A3ZU72_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZU72_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.720e-19
Identity = 64/155 (41.29%), Postives = 83/155 (53.55%), Query Frame = 2 
Query:  338 LYLPPEAEEDVRGNVVLFPGDVQDLHRRMLSKGHREFSDYCLESTAQGLATKFPGHA-VWVVLPKTHVHGALASYDNFGKTDWASGGAVLEYLVDGSACKHLEALLNTAADELQSLGRNGACGVMSDRRPDVSLPLTLVGFSKGAVVLNQLVTEL 799
            LYL       VR NV+ FPGDVQD    ML+    ++SDY  E+  + L+ KF     VWVV P    HGA +S+DNF  T+    GA  +Y     A KHL +L+      L+  G N +           +LP+ L+GFSKG +VLNQLVTEL
Sbjct:   54 LYLSIPKSATVRCNVIFFPGDVQDFKMAMLAGPFADYSDYAYEAVGELLSEKFGDTCNVWVVRPSRFKHGAYSSFDNFVTTN--EYGAATKYDPTVYATKHLASLMQNTQATLRLQGVNVS----------TALPMHLLGFSKGGIVLNQLVTEL 196
[Close]
BLAST of mRNA_P-littoralis_Contig133.100.1 vs. uniprot
Match: A0A5D6YBP7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBP7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.440e-19
Identity = 69/167 (41.32%), Postives = 87/167 (52.10%), Query Frame = 2 
Query:  305 GVDGCSSSNEVLYLPPEAEEDVRGNVVLFPGDVQDLHRRMLSKGHREFSDYCLESTAQGLATKFPGHA-VWVVLPKTHVHGALASYDNFGKTDWASGGAVLEYLVDGSACKHLEALLNTAADELQSLGRNGACGVMSDRRPDVSLPLTLVGFSKGAVVLNQLVTELA 802
            GV   +  NE+L  P + E   + NV+ FPGDVQD    M+S    EF ++  E  A  LA KF G   VWV+ P      A + +DNF +T+    GA   Y   G+A KHL ALL +    L   G + A            LPL LVGFSKG +VLNQL+TELA
Sbjct:   96 GVGWDNMENELLVAPTQRE--AKSNVIFFPGDVQDFRADMVSGAFPEFCEFAYEHAAAVLADKFGGDCNVWVIRPAHFFQRAFSCFDNFVETNEI--GAATAYSSSGTAIKHLLALLESVRCTLLQRGVSVA----------TDLPLHLVGFSKGVIVLNQLITELA 248
[Close]
BLAST of mRNA_P-littoralis_Contig133.100.1 vs. uniprot
Match: A0A0P1A8R4_PLAHL (Conserved developmentally regulated protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8R4_PLAHL)

HSP 1 Score: 98.6 bits (244), Expect = 2.750e-18
Identity = 70/191 (36.65%), Postives = 96/191 (50.26%), Query Frame = 2 
Query:  245 SSAPAGQT----RQTHILRCHAPNGVDGCSSSNEVLYLPPEAEEDVRGNVVLFPGDVQDLHRRMLSKGHREFSDYCLESTAQGLATKFPGHA--VWVVLPKTHVHGALASYDNFGKTDWASGGAVLEYLVDGSACKHLEALLNTAADELQSLGRNGACGVMSDRRPDVSLPLTLVGFSKGAVVLNQLVTEL 799
            +S+P+ Q     R T  LR H           NE+    P+       N++ FPGDVQD    M++     + +Y  E+ A+ L+ KF G A  VW++ P    HGA +SYDNF +T+    GA ++Y    SA KHL  L+      L+  G N +            LP+ L+GFSKG VVLNQLVTEL
Sbjct:   18 TSSPSNQESVNERLTFRLRSHG-----WIDRENELFLSIPKCATACY-NIIFFPGDVQDFETAMMTGPFAHYCEYSYEAVAELLSKKF-GEACNVWIIRPHRFKHGAYSSYDNFVRTN--EYGAAIQYDPTASATKHLAFLMQNTQAALRQQGVNVS----------TVLPMHLLGFSKGGVVLNQLVTEL 189
[Close]
BLAST of mRNA_P-littoralis_Contig133.100.1 vs. uniprot
Match: W2Q0W5_PHYPN (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=W2Q0W5_PHYPN)

HSP 1 Score: 97.8 bits (242), Expect = 4.490e-18
Identity = 67/188 (35.64%), Postives = 90/188 (47.87%), Query Frame = 2 
Query:  239 PDSSAPAGQTRQTHILRCHAPNGVDGCSSSNEVLYLPPEAEEDVRGNVVLFPGDVQDLHRRMLSKGHREFSDYCLESTAQGLATKFPGHA-VWVVLPKTHVHGALASYDNFGKTDWASGGAVLEYLVDGSACKHLEALLNTAADELQSLGRNGACGVMSDRRPDVSLPLTLVGFSKGAVVLNQLVTEL 799
            P S+  +   R +  LRC       G       L+L          N + FPGDVQD    M +    ++SDY  E+ A+ L+ KF     VWVV P    HGA +S+DNF  T+    GA  +Y     A KHL +L+      L+  G N +           +LP+ L+GFSKG +VLNQLVTEL
Sbjct:   23 PPSNQDSDIERSSFRLRCR------GWHDRENELFLSVPKNTTACCNAIFFPGDVQDFKATMDAGPFADYSDYAYEAVAELLSEKFGSTCNVWVVRPSRFKHGAYSSFDNFVTTN--EYGAATKYDPTAFATKHLASLMQNTQATLRRQGVNVS----------TALPMHLLGFSKGGIVLNQLVTEL 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig133.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB46_9PHAE1.740e-14545.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGX1_ECTSI1.310e-14249.07Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A835ZEC5_9STRA3.800e-2842.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A225VJI9_9STRA1.710e-2140.76Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
H3HB66_PHYRM4.640e-2041.29Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A484E2X1_BRELC2.150e-1936.22Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6A3ZU72_9STRA2.720e-1941.29Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A5D6YBP7_9STRA4.440e-1941.32Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A0P1A8R4_PLAHL2.750e-1836.65Conserved developmentally regulated protein n=1 Ta... [more]
W2Q0W5_PHYPN4.490e-1835.64Uncharacterized protein n=17 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig133contigP-littoralis_Contig133:466381..473273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FGX1
Preferred nameC2orf69
PFAMsUPF0565
Model size3372
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0007154,GO:0007267,GO:0008150,GO:0009987,GO:0023052,GO:0030154,GO:0032502,GO:0045165,GO:0045168,GO:0046331,GO:0048869
Exons4
Evalue2.81e-149
EggNOG OGsKOG2800@1|root,KOG4341@1|root,KOG2800@2759|Eukaryota,KOG4341@2759|Eukaryota
Ec32 ortholog descriptionHypothetical leucine rich repeat calmodulin binding protein
Ec32 orthologEc-11_000950.1
Descriptionmodulation by host of viral RNA genome replication
Cds size1932
COG categoryKLT
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig133.100.1prot_P-littoralis_Contig133.100.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig133 467715..473167 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789612.5625463-UTR-P-littoralis_Contig133:466380..4677141680789612.5625463-UTR-P-littoralis_Contig133:466380..467714Pylaiella littoralis U1_48UTRP-littoralis_Contig133 466381..467714 -
1680789612.6496203-UTR-P-littoralis_Contig133:473167..4732731680789612.6496203-UTR-P-littoralis_Contig133:473167..473273Pylaiella littoralis U1_48UTRP-littoralis_Contig133 473168..473273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789612.6019115-CDS-P-littoralis_Contig133:467714..4685961680789612.6019115-CDS-P-littoralis_Contig133:467714..468596Pylaiella littoralis U1_48CDSP-littoralis_Contig133 467715..468596 -
1680789612.6120315-CDS-P-littoralis_Contig133:469138..4696861680789612.6120315-CDS-P-littoralis_Contig133:469138..469686Pylaiella littoralis U1_48CDSP-littoralis_Contig133 469139..469686 -
1680789612.6248026-CDS-P-littoralis_Contig133:470011..4701961680789612.6248026-CDS-P-littoralis_Contig133:470011..470196Pylaiella littoralis U1_48CDSP-littoralis_Contig133 470012..470196 -
1680789612.6371121-CDS-P-littoralis_Contig133:472850..4731671680789612.6371121-CDS-P-littoralis_Contig133:472850..473167Pylaiella littoralis U1_48CDSP-littoralis_Contig133 472851..473167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig133.100.1

>prot_P-littoralis_Contig133.100.1 ID=prot_P-littoralis_Contig133.100.1|Name=mRNA_P-littoralis_Contig133.100.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=644bp
MPHSASSARIYAAHAMRSDHVWGDGSTTSACVLEWPPRHGDHFLPDSSAP
AGQTRQTHILRCHAPNGVDGCSSSNEVLYLPPEAEEDVRGNVVLFPGDVQ
DLHRRMLSKGHREFSDYCLESTAQGLATKFPGHAVWVVLPKTHVHGALAS
YDNFGKTDWASGGAVLEYLVDGSACKHLEALLNTAADELQSLGRNGACGV
MSDRRPDVSLPLTLVGFSKGAVVLNQLVTELACEPAPAAASPTTPSRGSK
RSDSRDDGHPVRFKKNRTGKRLRVCTSTSIRYDRSECDGGGRLASSEGAL
TNPPSPADDGGGGITVSSSWPMSWEGERGEAGMHTEISHAEVEDGRRSTQ
DSTGSLWSRLWSTFGKSRFSTKTFSLISAGSSTNGSRTDEDLDEASGGKW
KATHTDEDEESLLNPSSPSPRTASACGQRRNRRQPSSTSFSAAKVDDDAR
MFGRRPHRPNAGSAAQRLFDRVAAIHWVDGGNGDLAGGSFPTNECSLARL
AALPNLAIRVHGTPYQWGNHCRPFLAFEADAFVASVEGFRRALIVREGSG
IAATNSTKSRVVAAGSRDTEHPRGAASGKANDVGCDCSVAGEGEIELESA
GNGDSKGDDRVVAGCDVKRLLYFDGEQPSLENHFRVLTELSTE*
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mRNA from alignment at P-littoralis_Contig133:466381..473273-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig133.100.1 ID=mRNA_P-littoralis_Contig133.100.1|Name=mRNA_P-littoralis_Contig133.100.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6893bp|location=Sequence derived from alignment at P-littoralis_Contig133:466381..473273- (Pylaiella littoralis U1_48)
TATGTATAAGATACCTGATGCTGTCCAGCAGTAAAGCAAAGAAGATAATG
TTGTGTTGCACAACAGAGCAGTTGACGTCACCCCACACCCCGCACATCCA
ACCCGAATGCCGCACTCAGCGAGTTCGGCTAGAATTTATGCAGCGCACGC
GATGAGATCTGATCACGTGTGGGGTGATGGTAGCACCACCTCCGCCTGTG
TGCTGGAGTGGCCACCGCGCCATGGTGATCATTTCCTCCCGGATTCTTCC
GCACCTGCTGGACAGACGAGACAGACACACATTTTACGGTGCCACGCTCC
CAACGGAGTAGACGGCTGTAGCAGTTCGAACGAGGTACTCTACCTACCAC
CTGAGGCCGAGGAAGACGTGCGGGGCAACGTGGTGCTCTTTCCAGGAGAC
GTGCAAGACCTTCACCGTCGGATGTGAGAGATTGTTGACGCTGTGGTTGC
ATGCTTGCCTCTATGGACGCACCCATGATCATGTGAAATCATACTGCTGT
CCCTGTGTGCATCTTCCGCTCGTCATGCCGTATCTGGTCGAACCACACAC
ACGTGTCGATCCTCAAGTTGATGCTACTGCTGCATGGTTGTTGAATGCTC
TATGATTCGTCGTGGTGGACCCGATACCTACACGCCTGGACGCGAAAATT
GCTGGATGTGCCCTGAAGAAGCCGGCACGGCGGTGTATTTTTTTCCTCGC
TCAAATTCGTGTGCCCGCACAGCACTACGATACCACTTCGTACTTCGTTC
GTATCATATGATATCCCATCCAACTCTACATTTTTCACAATAGTGGAAAG
CAAATCAAACGGGGGAAACGGCATGATATTATCCATACCTGTACAACAGC
ACTATCATGTTTTTTTAACATCATCATATCATACGAAGTATCCAAGTACA
TACGGAGTATAATACTTTCGAAGTACTTCGCATGATACACGAATAACACA
CTTCTTTTTGTCCGTTGGGAAAGATGGCAGGGATCTGCCGTGACCCTTGC
TTTATGATTTATGATACATGCACATCGTGGGTATCCGCCGTATCAAAATT
GCACCGCCGTTCCTGTCGTCCCCTCTTCTGAAAAGACAAACGCATCATTC
GATGCTCGCCTGCCTTCTATGAAAATAGGGCACTTCTCATGACACCGTGT
TCGAAATAAATGCCTGTTTTCGTAATCGTACTTCGAAGTACGTACAAGCA
TTTCATTTTTCGCCCGGCGTTACCCTACATACATCATGGCTTTTATGTGC
GGCGATTTGATAAGGCATGTTGATAGCTCGATTCATCAACTGATGTATAA
CAACAGACCCGGAGACATACACAAGCACTTCGAAGTATCTCGTATCTTAC
GGCCGCAAATGAACAAATAGGTTGCACGAACGTAAAGACCGTGTTTCGCT
GGGAAAAGAAAACGATTTAAATATATGTCGTAGAATAGTAATTCGAAGTA
AGAGAGTAGTGTACAGTAGTTGGTACGTTCGTGCGAAGTACTCTTGTTTT
CTTGATTTCTTCCTGGCGTTTCCCGGACCAGCAAGGGCGAATGAATGTTT
GATTCAAAAAAAAAAAAGGAAATATATATATCATGTGCGAACCCCGTGGC
AGCCTTTTTTGGTCTCAATTTCATGGTACTCCAATTGGAGTAAAGCAGTG
AGTCAAATCCACCCGGGATCATGCGAACCGCGCGTAGTAAAGTGCCCGCG
GCTGGCGACAAGCGGTCAACCCTCGGCTGGCAACTAAGCACCAAGCGAGG
TTAAGGCGTAGGTCTAAGGGAGGTGGTCTGCAGGGAGACCATGGCGACGA
CTCGACGGCCCAACATCAGACATGCCATGGCGCCTATCGCGGGGGGGGGG
GTACAGAACAGGCTGCTGCCGCCCGCGGCAGGCGATGATCATGTTCGTTG
CACCGGACAAGCACGATGACAATTACGAAGCAGGCAAATCGAGGCATCGT
TGCGGTTACCGCGGCGCTTTTCACGACCGCCGATGCCGTCGGTTTCTTGA
TGGATCACCCCATGCTTGCCTTCATCCCTGCTGCCATAGCCCCTGAGTTC
GGGTTTGCTTTGCCTGATCTGGCACCCACGACTGCTGCGACAGCCAGAAG
AGTTATTTTTGGCTCTTCCACAGCAGCAAGTGGGTGTCGTCGTGTTTTTC
GTTGCTCTCGACAGTTTGTGTGGGGGGTGGCGCGAAGCAGTGCGTTATGA
TGCGACCGGGAGGGCACCCAAGCGGTCTTCGTAGCATCATGGGCCCCCGG
TCATAGATTTTTTGCCTTTTCCGAATATCCGCGCGTTTTTTCCGCACGAA
AATAACTGTTTTTTGCAGGAGTCGACAAAAAGGGCGTATACCCTCTGCGT
TTGCACAAAAAAGGGGCAGTGTGCTTTTCATGCCGGTTTGAGGTGCTGCA
TGTCGGCTGTGCCATCCCGAAAAAATAGTCTGGCGCCTCAGCCCGACGCA
CACGGCGTGTAGGCAGCACGCCTACTGTAACGTTTTTTTTCGCGCCTGGA
AATGGTGTTATCTGGGCCGGGAAAATAGCCGGGACAAGTACGACTTCACT
GTGCACCTATTTTTGTTGACGAAAGCAGAGAGTAGACCTCCTTCTCAGCT
AAGAAGTCAGATACCCTCGTTTTGTTCACTCAAAGCTTTATTTTATGTCC
GAGGCCTACAACCTTCGCCCCTTTTTCTTCACTGAATCCTCCCACGCACG
AAACCATCCGCAGCGGAGTCGTCAATCGGCTGCGTATCCAGATAAAAGAT
GTACGCGAATGTATGAAGCATGGGTGATGAGTCCTTGCGTGTTTCCTTGT
GCCGCTTCTGTCCTCCCAACTCCCATCCTTTACACACAGCACAACGATCG
AAGCAAAACCGCGAAAATGGCGTGTCCAGCCCTGGGCATGCACAGGGTGG
GGAGTCCGGTGTACACTGAGACAGCATTTTGCTGTGCTCAAGTTTTTCGC
GGAGCTCTCGAATTTACCGCGTGCAGCCGACGGTTGCTGTCAGTGACTTC
GATGGCGTTCTCGTGCCTGACGTCACTGCTAACACGTGTTTTACCGTACA
CGTATATATACCATATCCGTGCGGCAGGTTATCGAAAGGTCACAGGGAAT
TTTCCGACTATTGCCTGGAGAGCACCGCGCAAGGGTTGGCAACCAAGTTC
CCCGGGCACGCGGTGTGGGTGGTGTTGCCGAAGACTCATGTCCACGGCGC
TCTTGCCTCCTACGACAACTTTGGGAAGACGGACTGGGCTTCTGGTGGCG
CGGTTCTTGAGTGTGAGTGCGGAAAGTGCGTGTCTGGCAGACTGCGTGTC
GTCAAAGTCTTTTGCGCTTTCTCTGGTCGCCGCGGAGTATGCCTCACGGT
AGTTTTTCACGCTCAGGACGTGCAGGTTCCAAACTGGGCCGTGTTCGTTC
GTGGACGCGCTTCAAATGTTAATTGTCTGAGGACAGTGTTCACCTATCGA
TAGGCACGTCTTGAACGCTCCCTGTGTGTGGAACCCACCCGTTTATTTTT
CTTCTTCTTTTTTCGAGTTTTGAAGCAATTTTCCTTTTTTTTCGGATGCT
GCCCCCTCTTTGGCCTGTGTTGCCCATCCACCATCAGACCTCGTAGACGG
TTCGGCTTGCAAGCACCTCGAGGCTCTCCTCAACACCGCCGCAGACGAGC
TCCAGTCTCTTGGACGAAACGGTGCTTGCGGCGTGATGTCCGACCGTAGG
CCCGACGTGTCGCTCCCCCTGACGCTTGTCGGCTTCAGCAAAGGAGCCGT
GGTCCTCAATCAGCTCGTCACCGAGCTGGCGTGCGAACCAGCACCGGCAG
CGGCATCGCCAACGACCCCGAGCCGCGGCAGCAAGCGCAGTGATTCACGC
GACGATGGTCATCCTGTTCGGTTCAAGAAAAACCGCACTGGTAAGCGATT
GCGTGTGTGCACGAGCACCAGCATCCGGTACGATAGGAGCGAGTGCGACG
GTGGTGGGCGCTTGGCCAGCAGCGAGGGTGCTTTGACGAATCCGCCGAGT
CCAGCGGATGACGGTGGCGGTGGCATCACCGTTTCCAGCAGCTGGCCGAT
GTCTTGGGAGGGCGAGCGGGGCGAGGCAGGCATGCACACCGAAATTTCGC
ACGCAGAGGTTGAAGACGGTAGAAGGTCAACCCAGGTGCGTTCACGAAGT
TACTAAGGTTGCATCTGATCAGTAGCCTGTCAGTCAGGCCGATCGTCACC
GCAGTCCGGTTGTGTCTTTTTTCGCACCAATGATGTTCTGTCGGATTTGG
CACAGACCAGCTTATCCGTGGCGCATTGCGCACCCATTTCGCCCCCAGCA
AGTGCACACAGCTGCGAAGGTAGCTCCAATGTGGCGTGTTGTCGGTGTTA
ATGTTGTTGTTGTTGTCGGTTCTCACATTACCTACCAATGACACTAGACA
AAACTATAGTACTACGGAATCAGAGATCATAAAACCAAGGCAAGCCAGGC
AAACCGAGGCAAACCAGAGCGCGCAGGGTTCAGCAAATACGATCACAGTT
TAGGAGGAGTGCTTCCTCGTGAGTGCTGCATGGAGAAGTAGGGTGTCGGT
GGCGCCGTAAATACCGGTATGATGTCGGTTGTCCCTCGACAGCAGAATCA
ATAGCATTCAACCCCTTCCCTTGCCCGGCATGGTGTTTGCGTTCCTTCGT
GTGGTGCATGCGATACGTCGTGAACAGGACAGCACTGGTTCGCTGTGGTC
TCGACTGTGGAGTACCTTCGGCAAGTCGCGCTTCTCGACCAAAACGTTTT
CTCTGATCAGCGCGGGATCGAGCACGAACGGGTCTCGAACAGACGAAGAC
CTTGACGAAGCTAGTGGAGGAAAATGGAAGGCCACACATACAGACGAAGA
CGAAGAAAGCCTCCTCAATCCTAGTAGTCCTAGTCCGCGAACAGCATCCG
CCTGCGGCCAAAGACGGAACCGCAGGCAACCCTCTTCCACCTCTTTTTCT
GCAGCAAAGGTAGACGATGACGCGCGCATGTTCGGCCGAAGGCCCCACAG
ACCGAATGCCGGTAGCGCGGCACAGAGACTCTTCGATCGCGTCGCCGCTA
TCCACTGGGTAGACGGGGGCAACGGAGACTTGGCGGGGGGGTCTTTCCCG
ACGAACGAGTGCTCTCTGGCGAGGCTTGCCGCTCTCCCGAACCTGGCCAT
TCGCGTGCACGGAACGCCGTACCAGTGGGGAAACCACTGCCGACCTTTTC
TAGCTTTCGAGGCGGACGCCTTTGTGGCATCTGTGGAGGGATTCCGACGA
GCGTTGATCGTGCGGGAAGGGTCCGGCATTGCGGCGACGAACTCTACGAA
GAGCAGGGTAGTTGCGGCGGGATCACGAGACACGGAGCACCCGAGGGGTG
CCGCGAGTGGCAAGGCTAACGATGTTGGGTGTGATTGTAGTGTTGCCGGC
GAGGGTGAGATAGAACTGGAATCAGCCGGTAACGGGGATTCGAAGGGGGA
TGACCGTGTCGTAGCAGGATGTGATGTGAAACGCCTTCTTTATTTTGACG
GCGAGCAACCGTCCTTGGAGAACCACTTTCGAGTTCTGACGGAGCTGAGC
ACGGAGTGAATTTGCTCTTTCCTTGCAGTGATGTTTGAGCCGATCTCTTA
ATGCTTCAAAGTATGTTTCTTCGCGGTTTTGCGTTGCTGTTGCTGGCGTA
TGTGTGTTGGATTTATGATTTGATCCTGCTGTTTCCGTTCGCCACGATAC
GACTGGAGGAGAAATGTCTGTTCATTATAAATTTACCAGTAAATGTTTTA
GTCTAAGCTTGCAAGGTATTTCAACCCGCCCTTCGGCCGTTTCGGCCTCT
CTGTTAATATAGTGCCGCATTTTGTGAATATCCGTGGTGTAGCACTCCAG
TGATCATTTGACGACGGGTATGCTTCTTCCCTGAAACTCTGTAGCGAGAC
GCTCATGTTCTTGTAATGGGCGGGACTAGAGTTGAGCGCACGAGATCCCG
GTACCACTCTGTAGTCCCAAAGTGCTTTGTCGCACTGCTCTCTGTCGATG
AGAGTCATGCGAAAGTCGCTGGGTTGCAGTATTATCTGTGTGAGTAACTT
TTGAAAGATTCCGAAGCTTCATACCAGTTACAAACTACGGTCGGAGCTGT
CATGTGGTGGTGTATTTGTGTTTGCCCCATGTGTAGTTACGAGCGTCGTA
TGGTTGGGCTTCTATAAATAGGGATGGGCAATGTAGGAAGGTTCTTGTCT
TCCATTTTCAGCATTTACACACATTTTGAGCGTGGCATAAGTGGCCGTGA
AAATAAAGAGGGCGTGCGCAGGTACCATCAAACAATCCGATCGTCATCAT
GAAGAAGCGTACAGCGGATGCTGCCGCCCCTGTGCAATATTTTAGAGTGC
AGTGCCAGATGTTACACGCCCGCGTTCTGGGTGTGAAACAAAAGTTGTCA
CCGATGTGTAGTGTACTGCGGGACGGGTATGTATGTATTCGATTTACTGG
TGATGCAACATGGACATTTGTTCAAAGCACGTCATGTGCTGTTCACCTCC
ATACCCGAGAACACCCTGCGTTGGACTCTCGGATTAGCTTCGTAAAAAAT
CGCACCAAGCACACCTTTTCAAGGCTTTGGGGTGCGCGATTGTAGGTAGG
TAAGGGAGCGTTCACTGCGTGATGGCACCGGCGTTTTTTTCCGCTCTGGT
TGAGATTCGACCTTCAAAGAAAGGTGTTGTTGAGGTGTCACTGTTGTGAA
CAAAGAGTGTTGTACACGTCTTCTTCACACCAACCTTTGAAGAGGAAAAT
GCAAGGATGTGGCGCTGTGCTCCCGCCCATGGTATGTCACACCACCAACA
GCAGGGGGCGAGAAGCAACGAAAGATATACTAGGACTGCATAATGCGCCG
AGCTAATTGCTACCAAAACTTGTGCAGTGCGCTCGCGCAACTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig133:466381..473273-

>mRNA_P-littoralis_Contig133.100.1 ID=mRNA_P-littoralis_Contig133.100.1|Name=mRNA_P-littoralis_Contig133.100.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1932bp|location=Sequence derived from alignment at P-littoralis_Contig133:466381..473273- (Pylaiella littoralis U1_48)
ATGCCGCACTCAGCGAGTTCGGCTAGAATTTATGCAGCGCACGCGATGAG
ATCTGATCACGTGTGGGGTGATGGTAGCACCACCTCCGCCTGTGTGCTGG
AGTGGCCACCGCGCCATGGTGATCATTTCCTCCCGGATTCTTCCGCACCT
GCTGGACAGACGAGACAGACACACATTTTACGGTGCCACGCTCCCAACGG
AGTAGACGGCTGTAGCAGTTCGAACGAGGTACTCTACCTACCACCTGAGG
CCGAGGAAGACGTGCGGGGCAACGTGGTGCTCTTTCCAGGAGACGTGCAA
GACCTTCACCGTCGGATGTTATCGAAAGGTCACAGGGAATTTTCCGACTA
TTGCCTGGAGAGCACCGCGCAAGGGTTGGCAACCAAGTTCCCCGGGCACG
CGGTGTGGGTGGTGTTGCCGAAGACTCATGTCCACGGCGCTCTTGCCTCC
TACGACAACTTTGGGAAGACGGACTGGGCTTCTGGTGGCGCGGTTCTTGA
GTACCTCGTAGACGGTTCGGCTTGCAAGCACCTCGAGGCTCTCCTCAACA
CCGCCGCAGACGAGCTCCAGTCTCTTGGACGAAACGGTGCTTGCGGCGTG
ATGTCCGACCGTAGGCCCGACGTGTCGCTCCCCCTGACGCTTGTCGGCTT
CAGCAAAGGAGCCGTGGTCCTCAATCAGCTCGTCACCGAGCTGGCGTGCG
AACCAGCACCGGCAGCGGCATCGCCAACGACCCCGAGCCGCGGCAGCAAG
CGCAGTGATTCACGCGACGATGGTCATCCTGTTCGGTTCAAGAAAAACCG
CACTGGTAAGCGATTGCGTGTGTGCACGAGCACCAGCATCCGGTACGATA
GGAGCGAGTGCGACGGTGGTGGGCGCTTGGCCAGCAGCGAGGGTGCTTTG
ACGAATCCGCCGAGTCCAGCGGATGACGGTGGCGGTGGCATCACCGTTTC
CAGCAGCTGGCCGATGTCTTGGGAGGGCGAGCGGGGCGAGGCAGGCATGC
ACACCGAAATTTCGCACGCAGAGGTTGAAGACGGTAGAAGGTCAACCCAG
GACAGCACTGGTTCGCTGTGGTCTCGACTGTGGAGTACCTTCGGCAAGTC
GCGCTTCTCGACCAAAACGTTTTCTCTGATCAGCGCGGGATCGAGCACGA
ACGGGTCTCGAACAGACGAAGACCTTGACGAAGCTAGTGGAGGAAAATGG
AAGGCCACACATACAGACGAAGACGAAGAAAGCCTCCTCAATCCTAGTAG
TCCTAGTCCGCGAACAGCATCCGCCTGCGGCCAAAGACGGAACCGCAGGC
AACCCTCTTCCACCTCTTTTTCTGCAGCAAAGGTAGACGATGACGCGCGC
ATGTTCGGCCGAAGGCCCCACAGACCGAATGCCGGTAGCGCGGCACAGAG
ACTCTTCGATCGCGTCGCCGCTATCCACTGGGTAGACGGGGGCAACGGAG
ACTTGGCGGGGGGGTCTTTCCCGACGAACGAGTGCTCTCTGGCGAGGCTT
GCCGCTCTCCCGAACCTGGCCATTCGCGTGCACGGAACGCCGTACCAGTG
GGGAAACCACTGCCGACCTTTTCTAGCTTTCGAGGCGGACGCCTTTGTGG
CATCTGTGGAGGGATTCCGACGAGCGTTGATCGTGCGGGAAGGGTCCGGC
ATTGCGGCGACGAACTCTACGAAGAGCAGGGTAGTTGCGGCGGGATCACG
AGACACGGAGCACCCGAGGGGTGCCGCGAGTGGCAAGGCTAACGATGTTG
GGTGTGATTGTAGTGTTGCCGGCGAGGGTGAGATAGAACTGGAATCAGCC
GGTAACGGGGATTCGAAGGGGGATGACCGTGTCGTAGCAGGATGTGATGT
GAAACGCCTTCTTTATTTTGACGGCGAGCAACCGTCCTTGGAGAACCACT
TTCGAGTTCTGACGGAGCTGAGCACGGAGTGA
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