mRNA_P-littoralis_Contig133.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig133.96.1
Unique NamemRNA_P-littoralis_Contig133.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig133.96.1 vs. uniprot
Match: D7FGW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW9_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 8.640e-70
Identity = 131/207 (63.29%), Postives = 151/207 (72.95%), Query Frame = 3
Query:  267 MPLDTELHKSAHKGDIEGVMELVESGKIDVNEKGAQDRTALHRAAGANHVGIIHFLLQAGAPVDCPDRCRRTPXXXXXXXXXXXXXXXXXDSGGDLRLTTMTGMNPLMCAVQQSWFSVAEAILEWSAECAEGE-GTGGQMPSPAELCLTQDAEGKTALTVAKEKGDASMQKLLKPYAPKKAPISWCGCAG--KRRQLAAVAGPASGE 878
            MPLDTELHKSAHKGDI+ V +LVE+G+++VN+KGAQDRTALHRAAGANHVGII +LLQAGAPV+  DRC RTP                 + GGDLR  T++GMNPLMCAVQQ W SVAEAILEWS  C E E G  G +PSPAELC   DAEGKTA+  AKE GD  MQKLLK Y PK+ P +WC C G   ++QL+AVA P + E
Sbjct:    1 MPLDTELHKSAHKGDIQSVRQLVETGEVNVNQKGAQDRTALHRAAGANHVGIIIYLLQAGAPVNTADRCLRTPLHWAAISGHLDATQLLLERGGDLRSKTVSGMNPLMCAVQQRWHSVAEAILEWSEGCTEDEEGVDGPVPSPAELCSATDAEGKTAVVFAKELGDVPMQKLLKSYIPKQ-PSAWC-CGGGAAKQQLSAVAVPPTAE 205          
BLAST of mRNA_P-littoralis_Contig133.96.1 vs. uniprot
Match: A0A6H5JFE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE8_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 1.360e-62
Identity = 136/250 (54.40%), Postives = 160/250 (64.00%), Query Frame = 3
Query:  306 GDIEGVMELVESGKIDVNEKGAQDRTALHRAAGANHVGIIHFLLQAGAPVDCPDRCRRTPXXXXXXXXXXXXXXXXXDSGGDLRLTTMTGMNPLMCAVQQSWFSVAEAILEWSAECAEGE-GTGGQMPSPAELCLTQDAEGKTALTVAKEKGDASMQKLLKPYAPKKAPISWCGCAGK--RRQLAAVAGPASGE-----------GGDNTAAXXXXXSTTPGATARGAGGAGGVGS-GMWFRRLVCFVKC 1010
            GDI+ V +LVE+G+++VN+KGAQDRTALHRAAGANHVGII +LLQAGAPVD  DRC RTP                 + GGDLR  T++GMNPLMCAVQQ W SVAEAILEWS  C E E G  G +PSPAELC   DAEGKTA+  AKE GD  MQKLLK Y PK+ P +WC C G   ++QL+AVA P + E            GD+  A     S   G+     G  GG GS G WFRR+  F++C
Sbjct:   21 GDIQSVRQLVETGEVNVNQKGAQDRTALHRAAGANHVGIILYLLQAGAPVDTADRCLRTPLHWAAISGHLDATQLLLERGGDLRSKTVSGMNPLMCAVQQRWHSVAEAILEWSEGCTEDEEGVDGPVPSPAELCSATDAEGKTAVVFAKELGDVPMQKLLKSYMPKQ-PSAWC-CGGGAVQQQLSAVAVPPTAEEPTMAPGHSRQSGDDRVAAAAPVSNDVGSGKAVDGSVGGGGSSGGWFRRVCRFMRC 268          
BLAST of mRNA_P-littoralis_Contig133.96.1 vs. uniprot
Match: A0A6H5JSR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR0_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 7.280e-19
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 3
Query:  267 MPLDTELHKSAHKGDIEGVMELVESGKIDVNEKGAQDRTALHRAAGANHVGIIHFLLQAGAPVDCPDRCRRT 482
            MP DTELHK+AH GD+  V +LVE G+I VNE GA +R ALHRAAG NHV I+++L++ GAPVD  D+  RT
Sbjct:    1 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSGRT 72          
BLAST of mRNA_P-littoralis_Contig133.96.1 vs. uniprot
Match: D8LFE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE4_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 5.690e-17
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 3
Query:  267 MPLDTELHKSAHKGDIEGVMELVESGKIDVNEKGAQDRTALHRAAGANHVGIIHFLLQAGAPVDCPDR 470
            MP DTELHK+AH GD+  V +LVE G+I VNE GA +R ALHRAAG NHV I+++L++ GAPVD  D+
Sbjct:    1 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDK 68          
BLAST of mRNA_P-littoralis_Contig133.96.1 vs. uniprot
Match: A0A836CGQ7_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGQ7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.660e-16
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 3
Query:  267 MPLDTELHKSAHKGDIEGVMELVESGKIDVNEKGAQDRTALHRAAGANHVGIIHFLLQAGAP 452
            MP DTELHK+AH GD+    EL E+G +DVNE GA DR ALHRAAG NH G+I +LL  GAP
Sbjct:    1 MPTDTELHKAAHNGDLAKCKELTEAGGVDVNEPGAADRRALHRAAGGNHTGVIEYLLSKGAP 62          
BLAST of mRNA_P-littoralis_Contig133.96.1 vs. uniprot
Match: A0A835YTH2_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTH2_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.870e-16
Identity = 80/177 (45.20%), Postives = 102/177 (57.63%), Query Frame = 3
Query:  267 MPLDTELHKSAHKGDIEGVMELVESGKIDVNEKGAQDRTALHRAAGANHVGIIHFLLQAGAPVDCPDRCRRTPXXXXXXXXXXXXXXXXXDSGGDLRLTTMTGMNPLMCAVQQSWFSVAEAILEWSAECAEGEGTGGQMPSPAELCLTQDAEGKTALTVAKEKGDASMQKLLKPYAP 797
            MPLDTELHK A+KGD+ G+ EL+E+   DVN  GA DRTALHRAAGA  + ++ +LL+AGA            XXXXXXXXXXXXXXXXX       ++T TG    M A   +  +  EA++ W     E      +M    +L    D EGK AL +AKE  D ++ K +K  AP
Sbjct:    1 MPLDTELHKCANKGDLAGIRELIETDGADVNALGANDRTALHRAAGAGQLEVLQYLLKAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPIVSTTTGTTAFMAAAGVNSLATVEALIGW----VEVHPDKYEM---RDLVGGVDNEGKGALQIAKE-ADPALAKAIKARAP 169          
BLAST of mRNA_P-littoralis_Contig133.96.1 vs. uniprot
Match: A0A836CN67_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN67_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.150e-13
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 3
Query:  267 MPLDTELHKSAHKGDIEGVMELVESGKIDVNEKGAQDRTALHRAAGANHVGIIHFLL 437
            MP DTELHK+AH GD+    EL+E G  +VNE GA DR ALHRAAG NHV +I +LL
Sbjct:    1 MPTDTELHKAAHNGDLAKCKELIEGGGAEVNEPGASDRRALHRAAGGNHVAVIEYLL 57          
BLAST of mRNA_P-littoralis_Contig133.96.1 vs. uniprot
Match: A0A482SYJ6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYJ6_9ARCH)

HSP 1 Score: 76.6 bits (187), Expect = 4.450e-13
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  267 MPLDTELHKSAHKGDIE-------GVMELVESGKIDVNEKGAQDRTALHRAAGANHVGIIHFLLQAGAPVDCPDRCR 476
            MP+D ELHK+AHKGD+E       G MEL E   ++VN+ GA DR ALHRAAGA H+ I H+  + GA VD   + +
Sbjct:    1 MPVDNELHKAAHKGDLEVCKAILEGQMELEEP--VNVNDPGASDRRALHRAAGAGHLDICHYFFEKGADVDAVSKAK 75          
BLAST of mRNA_P-littoralis_Contig133.96.1 vs. uniprot
Match: A0A2R5GN98_9STRA (Ankyrin repeat domain-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GN98_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.210e-9
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 3
Query:  267 MPLDTELHKSAHKGDIEGVMELVESGKIDVNEKGAQDRTALHRAAGANHVGIIHFLLQAGAPVDCPDR 470
            MP DT+LHK+A+KG+   V   ++   IDVNE GA +RTALHRA  +    ++  LL  GA VD  D+
Sbjct:    1 MPRDTDLHKAAYKGNANAVRACIDEDMIDVNEFGAANRTALHRAVASGSTEVVALLLDRGAIVDIQDK 68          
BLAST of mRNA_P-littoralis_Contig133.96.1 vs. uniprot
Match: A0A0A9VX16_LYGHE (Ankyrin-3 n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9VX16_LYGHE)

HSP 1 Score: 55.8 bits (133), Expect = 5.300e-5
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 3
Query:  267 MPLDTELHKSAHKGDIEGVMELVESGKIDVNEKGAQDRTALHRAAG--ANHVGIIHFLLQAGAPVDCPDRCRRTP 485
            MPLD  LHK+A KGD+  + E +     DVN KGAQ RT LHRA G  ++   I+  LL   A  + PD    TP
Sbjct:    1 MPLDGVLHKAALKGDLGVIEEYLSQYPNDVNAKGAQQRTPLHRAVGGGSDKKSIVLLLLDYKADPNAPDINGLTP 75          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig133.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FGW9_ECTSI8.640e-7063.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFE8_9PHAE1.360e-6254.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSR0_9PHAE7.280e-1961.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFE4_ECTSI5.690e-1761.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CGQ7_9STRA2.660e-1664.52Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A835YTH2_9STRA3.870e-1645.20Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A836CN67_9STRA3.150e-1363.16Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A482SYJ6_9ARCH4.450e-1350.65Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2R5GN98_9STRA5.210e-947.06Ankyrin repeat domain-containing protein 1 n=1 Tax... [more]
A0A0A9VX16_LYGHE5.300e-545.33Ankyrin-3 n=1 Tax=Lygus hesperus TaxID=30085 RepID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig133contigP-littoralis_Contig133:436781..449350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FGW9
PFAMsAnk,Ank_2,Ank_4,EDR1,Pkinase,Pkinase_Tyr
Model size4043
Max annot lvl2759|Eukaryota
KEGG koko:K21441
Hectar predicted targeting categoryother localisation
Exons7
Evalue5.97e-77
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
Descriptionprotein kinase activity
Cds size1056
COG categoryKLT
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig133.96.1prot_P-littoralis_Contig133.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig133 439502..449084 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789611.9257271-UTR-P-littoralis_Contig133:436780..4395011680789611.9257271-UTR-P-littoralis_Contig133:436780..439501Pylaiella littoralis U1_48UTRP-littoralis_Contig133 436781..439501 -
1680789612.042651-UTR-P-littoralis_Contig133:449084..4493501680789612.042651-UTR-P-littoralis_Contig133:449084..449350Pylaiella littoralis U1_48UTRP-littoralis_Contig133 449085..449350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789611.9361742-CDS-P-littoralis_Contig133:439501..4397931680789611.9361742-CDS-P-littoralis_Contig133:439501..439793Pylaiella littoralis U1_48CDSP-littoralis_Contig133 439502..439793 -
1680789611.9497635-CDS-P-littoralis_Contig133:440269..4405441680789611.9497635-CDS-P-littoralis_Contig133:440269..440544Pylaiella littoralis U1_48CDSP-littoralis_Contig133 440270..440544 -
1680789611.962465-CDS-P-littoralis_Contig133:440917..4410551680789611.962465-CDS-P-littoralis_Contig133:440917..441055Pylaiella littoralis U1_48CDSP-littoralis_Contig133 440918..441055 -
1680789611.975159-CDS-P-littoralis_Contig133:441625..4417151680789611.975159-CDS-P-littoralis_Contig133:441625..441715Pylaiella littoralis U1_48CDSP-littoralis_Contig133 441626..441715 -
1680789611.9846938-CDS-P-littoralis_Contig133:442179..4423121680789611.9846938-CDS-P-littoralis_Contig133:442179..442312Pylaiella littoralis U1_48CDSP-littoralis_Contig133 442180..442312 -
1680789611.9952521-CDS-P-littoralis_Contig133:442841..4429291680789611.9952521-CDS-P-littoralis_Contig133:442841..442929Pylaiella littoralis U1_48CDSP-littoralis_Contig133 442842..442929 -
1680789612.0046914-CDS-P-littoralis_Contig133:449044..4490841680789612.0046914-CDS-P-littoralis_Contig133:449044..449084Pylaiella littoralis U1_48CDSP-littoralis_Contig133 449045..449084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig133.96.1

>prot_P-littoralis_Contig133.96.1 ID=prot_P-littoralis_Contig133.96.1|Name=mRNA_P-littoralis_Contig133.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=352bp
MPLDTELHKSAHKGDIEGVMELVESGKIDVNEKGAQDRTALHRAAGANHV
GIIHFLLQAGAPVDCPDRCRRTPLHWAAISGHLDATKVLLDSGGDLRLTT
MTGMNPLMCAVQQSWFSVAEAILEWSAECAEGEGTGGQMPSPAELCLTQD
AEGKTALTVAKEKGDASMQKLLKPYAPKKAPISWCGCAGKRRQLAAVAGP
ASGEGGDNTAAAAAAGSTTPGATARGAGGAGGVGSGMWFRRLVCFVKCCG
TPGDRRNENWALSGPTVGDAGPSSSARSETAAAAAATGGKADESRGSTAT
ERGGGGGGGNRNIKAAGANNDIGTSLTLPASVEGVHTLGVVDRNGTGALA
M*
back to top

mRNA from alignment at P-littoralis_Contig133:436781..449350-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig133.96.1 ID=mRNA_P-littoralis_Contig133.96.1|Name=mRNA_P-littoralis_Contig133.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=12570bp|location=Sequence derived from alignment at P-littoralis_Contig133:436781..449350- (Pylaiella littoralis U1_48)
AGGGGGGTACACGGGTAAGATTATTAGTTAGGGTAGGGGGTAGTTGGTTG GGTTATTGGTCGAGCACCTTATACCCCCTTATACCATGCTGTCCGGTCCG GTCTACCAGACACGACAGGAGAGGGAACTGCTGCGGCGAGGCTGCCGTAC CCACTGCTATTTCCTTCGAGGGTGGTGCTTGGCCAAACTCTCCGACGTGA GCTATCCTATTTCGCATCTGGAGTCTGGCAAGCTGTATTCACCGGAATTG TCGGTATCAACCAACGATGCCGCTCGACACGGAGCTCCATAAGTCAGCCC ACAAAGGTGAGCGTGCCAACAAGGTTTTTGGACAGCAGTATCGGAGAGAG AACGAGCGCCGTGTGTGGGTGCCGCTCGACGATCACCTGCACATGGGGTC ACACACGCTGTAAACACTCCGGTCGAGTGTTGTATGATTGTATGCGTCTC AAGATATATGTGGTATGCATACTGCTGTACTGGGTTTGTTTGCTGGATTG TGTGGTATGATATACTCGGGAGTACGAAGTACTTCGTACGAAGTAGACAA CAATGGAACGAGTTCCCGAGTTCTGCTGTATGATAGCAGTACAGCAGGTA GTACCTTTTTGAGGGGAGGCCTTTGTTTGAGACGGTGCCACTGACTGTGT GATTCACTTCGTTCAAATGATTTCTGGAGTCCTTGTCGTCGCGGCCTTTT TTGAAAGAGAAGAATTTAGGGCAGTCACCGTCAAATGGTCTCCGTTGTTT TTGAAACACCAGAGCGAAGAGATAGATTGTGCCGAGACCATCAGCGCCAG CAGCACCAGCACATCACCATCGATGTACAAGTACAAGTACTGTACACGAT CGGAAGAGCGTTCGAAATAGTTCCGAGAGAATCGAAGGAACCGCCGCACA CATTCGCACGATTGGAATGACGGCGGCGGAGGGAATATATTCACAGACCG GCAACAGTAGTACGATGACACAGAACATGCATTGAAATATATACGGAATA TTTACTTCGGTACGAAGTAAATAATTAGAATAAAAGTTATACAAGTTACG ATTTCGCTGATTGATCAGCATTTTCATTTTTCTTTTTTTTTATTCATTGT GAATCACTTACAATTAGACTTGCCCTAGGCCGCTGACAGACCGGCATTTT GTGCTCTAGAGCTCTCACAGGCAAGGAATGAAATCACTTGAAATTAGACT ACGGCGGACCTCTGATTAGGATCATAACCGGCATTTTTTGCTCTAGAGCT CTCACAGCCCAGGAATGAAATCACTTGCAATTAGAATACGGCGGACCTCT GATTTCGATCATATGGCATCCATGAATCATTTTGGGTGTTGATTCCACTC CTCGTGCAGGTGTTGATTCCATTCCTCCTGCATTGTTGTTGTTGTCTTCA CATTAGAAACCATATCACTTGAAATTAGACCACGGCGGAACCTATAAATT CGATCGTACGGAGATCGTTTTGGATCATTTATCTACCCCTCCCTGTCATA TCCGATCACATTGGGTCGTTTTTCTTTCCTGCATCATCATAGGACGGAGA TCGTTTTGGATCATTTACCTACCCCTGTCATATCGTATACTCCGTATGCG AGTATCACATCAGACAGCTGCTCTCTCCACCTTTTTTTTGCTACGAGTAC GATATTGTCATCATCACATCTTCTCATCTTTTCATCTCTGAACTCTGTCC CGATACATGATATACAGACCACGACGGGGTACTGCTGTAGTACGGAATTG CGAAATGATGACATCATTTCGCAATAAAATTGTCATCATCATCACATCTT CTCATCTTTTCTTCTCTGAACTCTGTCCCGATGCATGATATACAGACCAC GACGGGGTACTGCTGTAGTACGTGATTGCGAAATGATGACATCATTTCGC AATTAGACTAGCATTGCGAGACCCCTAGGCCGCTGACAGACCGGCATTTT TTCCTTGCCTGTGCACTTGAAATTTGACCACGGCGGAACCTATCATTTCG ATCATCTTGGTCATTAGACTTTCCTTCCCTGTACTCATCAGGAGATTATC CGCCAACGACAGCGGTAACAGACAGAACAGACTGTGCGGAAAAGCCCTAG ATATTGGGTAATTTCGATCACATATTGGGCCGTTTATCATTCCTGCATCA TAGGACGGAGATAGTTTTGGATCATTTATTTATCTACCGTCATATCATAT ACTGGTACTCCGTATATATCCCAGCAGACAACTGCTCTCTCCGCTTTTTC TGCTGTACGAGTAGGATATTGTCATCATCATCACATCAATCTTCTCATCT TTTCATCTGCGCATACATATGCACATGAAATTAGACTACGCCGGACCTCT GATTTGGATCGTTTGGCATCCATGAAACATTTTGGGTGTTTATTCCGTTC CTCCTGCATATCACTTGAAATAAGAACACGGCGGAACCTTGCATTTCGAT CATCTTGGGTCATTTGTCCTTCCTCTTTTCCTTTACATACAGTATCATTA TATGATATTGGGTATAATTTCGATCACATTTGGTCGTTTGTTATCTTTCC TGCATTATTGTAGGCTCCGGCTTCGAAGACGCAACAAGGTGTCTTCGTTG AGTGTGGCACAATCTGGCGGGCTACGTACCACCTCCTGGCAATGTTTGCT GTTTAACATATACTTCAAGTATTATATATAGTCTTGCTTACTAAATAAAA TTGCCTCCAACCTCCCCACCCACCCGCTTGCGAATTCTCGACATTTAACC CGCACAGACAGCTGTAATCGTCAGTGATCCGTACTCCTCCCCCTTTCCCT TCTTCGCCGGTGTTTATAATACTCGGGAGTTTATTATTTTTTCCTTTCCT GCTGTAATACGAAAGGGGTTTTAGAGTGCTTAGCCCTCGGGAATTACCAC ACATGACTTGCCTTTTCCCTGCAGTAGTACACTGCATGCAGCAGGTAGGT ACTACTGTTGTACGCGTGTGCGTCGGTTGTGGCATTTACTGCTGCTGTGG ATTATGTACGTGCGATTACTCCGAGCGTTTGTTTTTTCGTTTTACTTTCG TGGGATTGTTTGTTTTTTCGTTACAGCGGCCCGGGACTCTTCTTTCCTTT TTTCCGTTTTCTTTCATCTTCACAACGAAATAAATGTATACGAAGTATAT GTATGTATGTAGTATGTGCCATTTTCGACCCCGTGTATCGTCGACATGTT CACCAGGCCATGTCCCACCATCACGCCTTCCGCGTGCCTCTATATCTTGG ATTCGGTCAGGACCGTGGCGGCGTCAGCCGCCGAAACCCTTGTATCATAT ACGAAGTACTTCGTACTTCGAAGTACGTACAGAATATGTGTGTGTCATCC CTTTCATTGGACGCCACTCTACACCTTCCGAGTAGGTAGACGCTCCAACC GGGGTCACACAGGGGGAAGTCAACACAAGAGTTTTTTTTTTTTTTCTCTG CTTCCCTCTGCGGTGCTTGCCTTTTTGGTTGAGCTTTTATCGCGAGAAAG GGGACAGCACTTCCTTTCCCTCGTCGATGGTACGATCGAATTTTGTTCAC CCACGAATTGATCGCTTTCCACTTTCACGCGCAATGTGAGAAAAAGCCCC TGATCGTGTTACTGCAGTGGGATTCGAACTCACGCGAGAATGTCAGAAGG TTACGTGGATAACCAACTGAACCACCGGGGCGACCGTACGAGTACCAGAG AGTATCAGACAGCAGATCGTTATAGGAAATGTGTCCAGCAGTAGTTCTGT GACAAGTAGAGTACTACTCTAGTACTTTGTTACCAGGTACGGAGTATGTC GTATTATATCACGTCATTCGTGCTCGTATACCAAATGTGTCTACAAGTAT CATACCGTTCTACCGGCACGGCACGTTTACAGCAGTAGTATCCCCATCTC CTCGTGTCGAAGTCTCGCAACCTAATGCGTATACTGCACGTCGTATACTG GTCATCTGTACGATACGAGTACTGCTGTAACATTAGTACACAACTTACTT GTATGGTAGAGCAGCGGACGTGTTGCGTGTGGTTATTGTCACTGCTGTAT TTGGAAATATATACAAGTAAACGTATGTATATAATACATACAGTATATAC AAGGTTCCCCTTCGGGAGGCTGGTACGTGTCTCTCCCGGGGCGAATCAAG ACATTATTGAAGTAATGCGCTACTATTTTGTTGTACCTGAATGTTCGGCA GTTGGTACGAAGTAGTTCGAAGTTAGGTCGTGATCCGATGTTGTACAATT AATTTGTTCGGCGGCGCGATCTCGACGAAAGGTGGCGTATGTGTGCGAAT CTCCCAAGAACAAATTCCCAAATTCCCAAATTGAAATTCTCAAATTCGAT GCTTTCTATTTGCCATACTGTAGATATGTACACCTAACTGCTGTACTGCT GCAGAAGTTGTCTGCATCACAAACGTCTACCTTGTTGTTTCTCTCATGTT TGTGCCGAGGCGTTGTGAGGGGGTTGCATATGAGTGAACAGGTCTGTTAC ATTTGAGGTGTTCGTCTTGAAATGTTCATGAGTGTGCAGCTTGCTTCTAT GAGAGATTTGAAAAGAGCTGTGGTGGCGGTTGAATGCTGGCGCACACGAG GAGAGCGGGCCGAAGGTATACAGTATGGTAATAGGGTTAGGTAACGCACT TGAGTTTATCAAGTGATTCGATCTGCCGCGTCCTTCTCGTAATTCGAGAG CAGGCGTTTTTTATCCGGGAAGCGGGGTTATTATGCCACACGCAGACCGC TTCAACAGCTCACAGGCTCACGAGTGCTGCAGTCACCAGGCACGCAAGCA CAGTTCTACATGAACCTGAATCGTGTGCTGCTTCTAACGGGATTGGGAGC TCTGAGAAGTACGGTGGGTGCAGATATTCAAGAAAATGTGACCAGATTTT AGGTCTGAAATAGTCACATTTCGACCGCTCCAGGTCGGTACTCTACCCCA TGCTCGGGCTACGGAGGTGCCAATAAGCTCCCACTAGGCAAGCGTGCAGT CACGGTGTGCATCAAACTATCACAAGTTGTAGCTTGGAAAAAGACGGTCC ACAGCGAGAATGCATAGTCGATGAGTGCCGTGAGATCTTGCAATCGTCCA CAAGCATATGATATGACTGAGTAGGTACAGGAGTCCAGAGCCGAGGGTAA AAAAAAACTTGTTTACCTTTTTTTTTTTACCCTCTGCTCTGGACTGCTGT GCTGTAGGATACATTATATCAGTCAGTCATATACACCGGATCATCCTTGT AGACGATCACAAGATCTCACGGCACTCATCGACTATGCATTCTCGCTGTG GACCGTCTTTTTCCAAGCTACAACTTGTGATAGTTTGATGCACACCGTGA CTGCACGCTTGCCTAGTGGGAGCTTATCACCTCCGTAGCCCGAGCATGGG GTAGAGTACCGACCTGGAGCGGTCGAAATGTGACTGTTTCAGACCTAAAA CCTGGTCACATTTTCATGATTATATGCACCCACCGTACCTATCAGAGCTC CCAATCGCGCGAGTAGCGGCACACGATTCGGGTTCATGTAGAATTGTGCT TGCGTGCCTGGTGACTGCAGCACTCGTGAGCCTGTGAGCTGTTGAAGCGG TCTGCGTGTGGCATAATAACCCCGCTTCCCGGATAAAAAACGCCTGCTCT CGAATTACAAGAAGGTTTTGACCGAGGAATTTCGCTATCCACTTGAAATT TTTCCCAAGTGCGTCACCTATCCCCATTACCATATACCTTTGGAGCGGGC CGCGGGCCATTTGTGTGTGGGTTTCGACTTGCTTCGGCGGGCTTTCTCTG CCCGGAAAGCGATCCCGCGAAATAGAGCCAGTCCCGGCACCTTTGAGCGT TGAGAACATGGGCCACCGATGCCGGGCGACCCCCGGACCTGCACGGTAAT GTACCGACGGGTCTCCTGCGTGCTCCAGCAAAAATCGCGAGCAAAGAACC GCTGCCAGCGGAGAAATGTATGCCCAAGCATGAAAAATGATTAAATGATA CGTATACATGTATACTTCATGCTTCGTACTTCGTACATTCGATAAGTACT TCGTAATACTCATGGAATACTTTGAGTTACATACGTATCGGTACGGATAC ACCATATAATCTGATACACAGTAGCTGATAGCCCTTCTTTTTTATGTTTC TTTCTTTTTGCAAGATGATCGGAGCAGCATCAATCGAGTTTATTACTTCG AAGCAATAAAAGGCAGCGAAGGAAGGCCAAGGCCGCGGCGAGAGTATGAG ATACAACAGCAGTACTCTTTTTTACAAGTATCCTGCATGCGGCCATCCTT CATGCTCATTCTCGTTTTCCGCCAACCCAAAAATGCTGTTGCTGCTTTGC GGGGGTTGACGCTGTACCTCGGCCTCTGTCAAAATTCTATTCCCTGGCGA TAAACGATGTCCGGACTGCAGGGGACATCGAGGGCGTGATGGAACTTGTG GAGTCGGGAAAAATCGACGTCAATGAGAAGGGTGCCCAGGACCGAACAGC CTTGCACAGGCAAGAAGTGCTCCCACATTTAAGCCGAGTAGAGTACGAAT AAGCACAGCTGTGAGTGAACGGCGTAGCTGCTGGTGAGGGTGTTCCATGA TGTAAATTAAGCGCCTTCAGTCGTATAGTAGCGTACTACTGCTGTGGTAG TGTGCAGCCGCGGTAGTGTTGTCTCACCAAATCGTCGGACGGTGTCGATC TTTACACGTCATTGCGTTCAAGTGGAAGTGCCCTGTCGTATGAAAGACGC AGGTGGTGTTGTGGTGTGGTGGTGCCGCACGTTTGGGCACCGAATGGCAT GGACACCAGCGGCCGTGATACATTTTTGCACTCCTTGCGGCCATCAAACC CAAGACAGCTGCTTCATTTTTTGAGTCAGTGAACCCTCGTTGTTCCGTCG TTGGCTTGTACTCGACAACAGGGCAAAATACCATCCGCGGCACTGACAAG GAAGGCTTTCATGTAACCCCCCCCCCCCCCCTCCGCGTCCCCGCTTCAAC GCCTCTTGGGATGGCAACACCTGCACCAACGTCTTCAGGGCTGCGGGCGC CAATCATGTCGGCATCATCCATTTCCTTCTGCAAGCAGGGGCTCCCGTGG ACTGCCCGGACAGATGCCGCAGAACGCCGCTGCACTGGGCTGCCATCAGC GGCCACCTCGACGCTACCAAGGTATGCTGCCACAGTTGCCACAGCATTGA TCTGCGACAACGGTGCGCCTCATGAAATGAACACTGATGTCTGTTTTTGT TTGGTCAAAATTTGTGAGCGAGGTAAAGGAAAAATGCTTTTACAACCGGT TCTGCTTTTAAACTTCGAAGAAATGTATATTTGCGCCCGTCCATGTTGAT AGTGGTGCGTGCCCCCAGTTCAACCTTAGTTGAGTTCCTGTTCAGGTTGT CAGAGGAGAGGACAGGAGTGGGTAATCCGATCTGCACGACTCGATCATTT GACTGTTGGCTTTCCCGCCGACTATCGTATCAAATACGTTTGGTGAAGCT CTGAAAAACGGGGAAGGCAGATTATTGTTTTGCCCCTTTGACAACGCGGG GTCAGCCTGTGCTTGTCAAAACAAAATACAAAAGGTTCGCTGCTGTTCAT ACATGTTTTCTCGCTGCGATGTATCTCCTGCTCAGGTGCTGTTGGATAGC GGAGGCGATCTGCGGTTGACAACCATGACCGGCATGAACCCTCTGATGTG CGCTGTCCAGCAAAGCTGGTTTTCGGTGAGCCCAACAACACGCACCGCAT AAGTATAGCAATCGTGGGTTGGCCCACCTGCAAAGTGGAACATTGTGACA GGGCGCACAAAGCTAGATCTGCGTGAAACCGCCCCACGTCGTCAACATCC ACGTACAAAAATTGCAAATTTGCTTCGAGAACGAAAGCTGTTTGGGCCTC CTGAAAGTTTTTTGGTCGGGTATGGCATGCTACAGAATTGGAAAATAGTT CTTTGATCACATGGAGCGAAGGGGAGCAAGCCTAAACTTTGCTGTGTCGT GTGTATGGATGGGTTTCGCTTCCGTGTTGAGGGACAGACTTCGAAGTACG TGTGCTATTCCGTCGATAAACCGCCGGACTAGCAAGAGGAGGCCCTTGAA GGCTGTACGTTATAACTACGGCTCAGTGAGAGAACGGCAGGCAGACGACA GCTGTTAAGCTTACTGTGTGTCTCGTTGTCGCGAGTACAGCTCTGATCCA TTCATGAACAGCTTGCGGCTGTTGCAATGGTTGCCACGCTCTTGCACTAC TGTTGACGCGTATTAAGTTTGACCGCGGCTTCGTGTTCGCTGCAGGTCGC AGAAGCCATTCTGGAATGGTCGGCCGAGTGCGCCGAAGGAGAAGGGACGG GAGGACAGATGCCGTCCCCCGCCGAGTTGTGCTTAACTCAAGACGCCGAG GGGAAGACCGCGTTAACGGTCGCGAAGGAAAAGGTGAGGCTCCGACTGCG GTGTGTTCATCGCTCGGAGATTTTTGATGTGAGGGAGGCGTTTCTTCGCT TTGAGGTATTTGGTGCAGAGGGAGCTTCGATAGTATTGCTTGTGTATTTA GCAATGTGAAAGTTTTCTGCTCACGTCTTATACTCGTTACGTGGTATCAG AAAGACATGCTCTTCCTTTGCCACCATATCTGCATTGCAGTTACGCCGAT GATTGAAGAGGGGCCGACTACCAAGCTCTATATTAAAGCGCTGCCCCGCC CGTCACCCTTTCCCTCGTCTTGTCTGTCTTACTTTCAATCGCCCCACTCA AAACCTCGCCGCCAACTCGCCTGCTGTGAAACGTTGCTGTCCACTGCTCA ACTCAGGGCGATGCGTCGATGCAAAAGTTACTCAAACCGTACGCCCCGAA GAAGGCGCCAATCTCGTGGTGCGGCTGCGCGGGCAAGAGGCGGCAACTCG CCGCGGTAGCGGGTCCGGCGAGCGGCGAAGGAGGCGACAATACCGCCGCC GCTGCCGCCGCTGGCTCTACTACTCCTGGTGCTACTGCTAGAGGGGCCGG TGGTGCTGGGGGCGTCGGTTCGGGTATGTGGTTCCGTCGACTGGTCTGCT TCGTGAAGTGCTGCGGGACGCCAGGCGACAGGTGATATTTTATTTGGAGA TGGATCTACGGCTGTCATGCGTTGGTTGGGTGTTGTTTGCGGTGAGAACA TCGACCGCGTAACGAAGAGCGATTTGTTTTGGTGCCTATTTTTGATGCCT GCGAAGAGAGAGAAAAAAAAGGTGCCCGCAGTTTTCTGATTTGTAACTGA CGTCGCTTCACCAACGTCGGTACATGATATTCTACATGGAGCACAAATCA CGTCCCGTTGGCCGTTTCCTTTGGCGTTGCAGGCATTATGTCGCCGCCGT TCCGACAGGTTATACAAACGAAACTGTACGGTGGCGGCGATGCGGTAACA GCAGTCGAAGTTTTCTCAAGCACGTGTCTCGTCGCACGTGAATTATGTGG TGTGTATACCTCGAATTATCAATGCATAAGTTACATTCGAAGCAGCCTCA CGAGGCATACCCAAATCATGACTATCTTTTCTACTTCGTATACCATTTCG GACGTAGGAGAAACGAAAACTGGGCTCTCTCCGGACCAACGGTAGGCGAC GCAGGCCCTTCGAGCTCGGCGCGTTCCGAGACAGCAGCGGCAGCTGCCGC CACCGGTGGCAAGGCCGATGAATCTCGGGGAAGCACCGCCACTGAACGCG GCGGCGGCGGCGGCGGCGGCAATCGAAATATCAAAGCTGCTGGTGCCAAC AACGACATCGGAACCAGCTTAACCCTGCCGGCCTCCGTCGAAGGTGTACA TACTCTTGGCGTCGTCGACAGGAATGGGACCGGGGCGCTGGCCATGTAGA GCGGTAGCGCGAGTGGAAATGGGGCGAGGGAGTCGCCTGACAGCAGCAGG AGGTGTCGTGAGCGTCGCGAAGGAGTGGGCGAGGGGGGCTCCGTGGAAGA TGAGCCGGCGGAGCGGCGGTCGCGGGAGTCAAGAAGCGGTAGCGAAGGGG GTTCAACGTGGAGTTCGAGCAAGGACGAAAGCGCAGATAGGGTCGGATGA GTCTCAATGCAGGAAGGTGGAAGGCGGTGGCGGCACTGTTTCTGGACGGT ATTACGGTCCTTCTTCTCTCAGATCGCCTCCCAACGGACACGTCTGGCAT CCGCAAGTAACCCGCAGTCGTCCAAGGTCCAACTTTTGTATTGTTGGGTG TAGGGTGGGGCTTTCGGGTGTAACTGCCGTTGTTGTGACCCGCCCACCTG ACAAGACAACTTTCCTGTTGTCACGAGTGCGTGAAAAAGGTACATGTAAA CGCCCCACCTCTCCCAAGCTTCGTAGTGTCATCCTGACGAGTTTGATTAC TGCTGTCGTTCTCCACGCTGGTCGCTGCATACGATCAACGATATGGGTCG ATTAGGCATAGCTCGAGGCGTGCAGGAAAAAGGCGATGGGTCAGAGGGTG TCTCTTTTTATGGATACGCAACGGCGGTGATTTCGCTTTCCGTCGGGGCC AGTGGGAAGCTCACCGCTTTTGGTGGTGGCGTGCGCGACAATGTGACGGT GTTGAAAGACTTCCGTGACTTGAAGCTGGTGACGATGGTCTTGCCGGTAG GGCAGACCTGCTTGTTGCCTGCAGCTCAAAATTTCGATCGAATGTAACTA AAACGACAGCGCAGGTTTGGGGGACAAGTTTAGCAGCCTTGCCGTGAAAT GTTTGAGCTTGCACACGTGGTACATACTGAAAAGGCAATGGAGATAGATG CGACTTGACCTCAGGAAAGCAAGATACTGTTTTCAGTGCCGAAATGCTGT TGTTGTGTGGCTTGTTGGCTGTTTGTTGCTGTTGTGGGTGTTGATAGTGT GTGATGTAGCCGGTGCACCATTTGGCGGGAATTACTCTCACTTCGCTGGT GTTATGTGTGCTTGGTTGTACAGCAGTGGTCAACAATGATGTTTTCTGGT AACGCGAATCACTACCGTGGCACTTCTCAGGTAGACTACAACGAGGGCGG GGGTGTTTCGGGTCAGATACCTCTTTGAATAAAGTCATCGTTGAATACGA CAAGGTGCATCTTGATTCCCTAGCTCTTGGTGATTGTGGTCACTGCTGCT CGTTTCTCAGGTAGACTACAAGGTTGACCATTTCCCAAAAGCTTCTGTCG AGTCAACGTTGGCATTAAGACTATTACTTTTGCGTAGTACCTCTCTTCAC ATGTTCATACCTCAAAATAGTATTTTGCCACACGAGGCGAATTTCGCGCC CCGAGTTTCGTGAATTGTCACCTGTATTTTCTCCGTGCCCGCATGGGCCA GGACTGATGTTGTAGGGTGGCAGCGATTGCGAGGGCAAGGGTATCGGTCG GGAGGCGGCATCGAGTGGGCGAGAAAACTGCCCGCGCGCTTTGCGGCGTG CGTCACTGCTGTAGGTAAAAGTGTCTATCTTTCACTCTTTTTACGGTGTA GGTTTTGGTGTCTCACTGTTGTCAAGCTCAAGTTTTGTGCATTGCTCATG GGTTTCTCCGTGCTCTCTCCTATTTGCAGGCTTGTTTTGCTTGGTCTTGG AGAAGGAAGCGCCTCCGTTTTTTCACATGCATGCGAAATTTGTGCCGTGT AGAGCATGCCTTGTACCAGTAGTTGTTTGAAGTAAAAAGTCGCCGCAGTC TCTTGGCTGCGAATCCTCCTCTCACAACGCCACACCGTTGTCAGCCCCTG TTTGTTTTGGGTACGGTACAGTGGCGTTTTGGAACGCCCGATTTATTTTC TTTGTCAAGAACGAATCAAAGATATGGGTACAGGAGGATTTCGCCCCAAA CCGTTTTTTGTCCCGACTCGAAAACTCGCTCGAGAGTCGCAGTAGTTTAG ACTTTTCCTACGTAGACTTGCTTCCGGAGTACGCATCACGTACGGCAAAT TAGAGGGTATCAGCTAGACCGCGGGGTCTTGTATTTGTTGTATCATACTA GCGGCAAGACTGCTCGACCAGAGTGTTCTGTAATCATCTGTGTAACATTC GGAGTTTTTTTCTATTTTGGATGTGTATAGGTGGGTGTAGCATTTGGAAT GCGTCGACATACCAGGCGTTTCATTCCAAACCTTGTTCCAGTTTTTTTTT GTAGTTGCTCTTCTAGCCTGATTTCGACACTTTCATGATATCCTCCGTGT GTGGCATCGTCAGCGTTGCTTCGGAAAACAATAATGATTTCAGCCTATTC AACTGGTACTCTAGCACGTTGTAGTTGTAAGATTTTATGAAGAGGGAGAT ATAGGCACTACCTTTCTTTCATCTTTAGTCAGTCGCTCTCAAATCGACGT TACTTTTGCCGAGGTTGCAGGTTCGGTTTTTATGGTGTAAAAAAGGTTCT TCACGAATTTTAGTTTTCGTGTGTGTGTGTGTGTGTGGACTTTGCTTTTC GTGTACGAGGTTTAAAAACAGGACGAGCGTATGTGGGTTGCATCACGTCC TCCCGTTTTCCACAGGATACCACGTCATTCTGGAAAGTCTGTTTCCTTCC TCTGCTGGACGTTGTTTTGTCGGAAATACTCCTCAGGGGTTTGTCGATGG ATCTCAATCGATACTTTTCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig133:436781..449350-

>mRNA_P-littoralis_Contig133.96.1 ID=mRNA_P-littoralis_Contig133.96.1|Name=mRNA_P-littoralis_Contig133.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1056bp|location=Sequence derived from alignment at P-littoralis_Contig133:436781..449350- (Pylaiella littoralis U1_48)
ATGCCGCTCGACACGGAGCTCCATAAGTCAGCCCACAAAGGGGACATCGA
GGGCGTGATGGAACTTGTGGAGTCGGGAAAAATCGACGTCAATGAGAAGG
GTGCCCAGGACCGAACAGCCTTGCACAGGGCTGCGGGCGCCAATCATGTC
GGCATCATCCATTTCCTTCTGCAAGCAGGGGCTCCCGTGGACTGCCCGGA
CAGATGCCGCAGAACGCCGCTGCACTGGGCTGCCATCAGCGGCCACCTCG
ACGCTACCAAGGTGCTGTTGGATAGCGGAGGCGATCTGCGGTTGACAACC
ATGACCGGCATGAACCCTCTGATGTGCGCTGTCCAGCAAAGCTGGTTTTC
GGTCGCAGAAGCCATTCTGGAATGGTCGGCCGAGTGCGCCGAAGGAGAAG
GGACGGGAGGACAGATGCCGTCCCCCGCCGAGTTGTGCTTAACTCAAGAC
GCCGAGGGGAAGACCGCGTTAACGGTCGCGAAGGAAAAGGGCGATGCGTC
GATGCAAAAGTTACTCAAACCGTACGCCCCGAAGAAGGCGCCAATCTCGT
GGTGCGGCTGCGCGGGCAAGAGGCGGCAACTCGCCGCGGTAGCGGGTCCG
GCGAGCGGCGAAGGAGGCGACAATACCGCCGCCGCTGCCGCCGCTGGCTC
TACTACTCCTGGTGCTACTGCTAGAGGGGCCGGTGGTGCTGGGGGCGTCG
GTTCGGGTATGTGGTTCCGTCGACTGGTCTGCTTCGTGAAGTGCTGCGGG
ACGCCAGGCGACAGGAGAAACGAAAACTGGGCTCTCTCCGGACCAACGGT
AGGCGACGCAGGCCCTTCGAGCTCGGCGCGTTCCGAGACAGCAGCGGCAG
CTGCCGCCACCGGTGGCAAGGCCGATGAATCTCGGGGAAGCACCGCCACT
GAACGCGGCGGCGGCGGCGGCGGCGGCAATCGAAATATCAAAGCTGCTGG
TGCCAACAACGACATCGGAACCAGCTTAACCCTGCCGGCCTCCGTCGAAG
GTGTACATACTCTTGGCGTCGTCGACAGGAATGGGACCGGGGCGCTGGCC
ATGTAG
back to top