mRNA_P-littoralis_Contig133.59.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig133.59.2
Unique NamemRNA_P-littoralis_Contig133.59.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig133.59.2 vs. uniprot
Match: D7G8K9_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K9_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 2.820e-68
Identity = 160/343 (46.65%), Postives = 211/343 (61.52%), Query Frame = 2 
Query:  644 SGGNAAATPHEQQVAVGDSTT-----RPVLNWWRSQRLTGSDG-GVVPAAGISPNRPSPGRPTERNRPESGSCSPALHTTSRKRDVQEESWTKAQLYSLRRSQADTALSVSDFWGAVASNVQDRDPQDCQQKWFEHFATPRGRRRKASKQGSPSRSAGTALLSDNTSRSSREVTANAHESPERINQPPERGNGDDLFEATPMRGRRQVGTQPTGGELEAKTPRTPAGPGVPIDYTSAVEAIPR-DGADYNQRGISKTYI--MSKKMRRRASQLGKNSMVTRERAKKTPYGS-AGRSFHAAAISQGHQLKVSVTSLGDVSLASTCNDEDSVC-LSGSCETSDDE 1639
            S   A A+ HE+    G  +       PVL+WWRSQRLT +   GVV AA     +PS G   + +     +C   L T  R  + +EE WTKAQ++SLRR+QA+TA S S FW AVA NV  R+PQ+CQQKWFEHFATPRGR R AS +G  S+  GT   SD+ SR++    A A+ S     Q PERG  DDLF+ATP+RG R+ G Q  G  L+ +TPRTPAGPG P   +SA++A P  + ADY +RG+S+ Y+  +SK+MR+ A Q GKN    R +A + P    AGR+ H AA+S GH+L+V V+  G VS+ ST N +D    +S   E+ DD+
Sbjct:    5 SNARAVASSHERHDVAGRDSNIPRGAAPVLDWWRSQRLTKTPSVGVVGAARFPLGQPSTGNHADMD----SAC--RLKTVGRDANGEEEPWTKAQMHSLRRAQAETAPSTSAFWSAVACNVDGRNPQECQQKWFEHFATPRGRSRNASARGCISQRIGTPP-SDDMSRNT--PAAAAYRSLAPAKQTPERGASDDLFQATPIRGHRRFGVQARGDVLDTRTPRTPAGPGAPCRDSSALDAAPGCEDADY-KRGVSRKYVKALSKRMRKGALQSGKNRKAARGQAIRKPASVVAGRTTHTAAVSGGHKLQVCVSGSGAVSVQSTYNSDDGASSVSDDVESDDDD 337
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig133.59.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8K9_ECTSI2.820e-6846.65Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig133contigP-littoralis_Contig133:217581..219962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps268221
Model size1721
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.45e-05
EggNOG OGs2E9QA@1|root,2SG18@2759|Eukaryota,2XDZG@2836|Bacillariophyta
Cds size1245
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789609.8593209-UTR-P-littoralis_Contig133:217580..2179551680789609.8593209-UTR-P-littoralis_Contig133:217580..217955Pylaiella littoralis U1_48UTRP-littoralis_Contig133 217581..217955 +
1680789609.8703055-UTR-P-littoralis_Contig133:218616..2186381680789609.8703055-UTR-P-littoralis_Contig133:218616..218638Pylaiella littoralis U1_48UTRP-littoralis_Contig133 218617..218638 +
1680789609.887743-UTR-P-littoralis_Contig133:219883..2199621680789609.887743-UTR-P-littoralis_Contig133:219883..219962Pylaiella littoralis U1_48UTRP-littoralis_Contig133 219884..219962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789609.879082-CDS-P-littoralis_Contig133:218638..2198831680789609.879082-CDS-P-littoralis_Contig133:218638..219883Pylaiella littoralis U1_48CDSP-littoralis_Contig133 218639..219883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig133.59.2prot_P-littoralis_Contig133.59.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig133 218639..219883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig133.59.2

>prot_P-littoralis_Contig133.59.2 ID=prot_P-littoralis_Contig133.59.2|Name=mRNA_P-littoralis_Contig133.59.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=415bp
MKRSGRTSIPVLDSSLPAPGLADRENPLLTIKQKSRALGGKGFHPRTRSC
KDASRGKSMACAQHRGALTARRGENEGQRDVSSGGNAAATPHEQQVAVGD
STTRPVLNWWRSQRLTGSDGGVVPAAGISPNRPSPGRPTERNRPESGSCS
PALHTTSRKRDVQEESWTKAQLYSLRRSQADTALSVSDFWGAVASNVQDR
DPQDCQQKWFEHFATPRGRRRKASKQGSPSRSAGTALLSDNTSRSSREVT
ANAHESPERINQPPERGNGDDLFEATPMRGRRQVGTQPTGGELEAKTPRT
PAGPGVPIDYTSAVEAIPRDGADYNQRGISKTYIMSKKMRRRASQLGKNS
MVTRERAKKTPYGSAGRSFHAAAISQGHQLKVSVTSLGDVSLASTCNDED
SVCLSGSCETSDDE*
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mRNA from alignment at P-littoralis_Contig133:217581..219962+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig133.59.2 ID=mRNA_P-littoralis_Contig133.59.2|Name=mRNA_P-littoralis_Contig133.59.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2382bp|location=Sequence derived from alignment at P-littoralis_Contig133:217581..219962+ (Pylaiella littoralis U1_48)
GTCGAGTCTCGCCGCGTTCCGGGGTGCACAAGATATGTAAGGCGTTAAAG
AGAAGGGGGCGCGCGAGTGTGCTCGCCAGCCCCAGCCCCCCAAGCGCTTG
AGCCAAGCGGTGAGCTTACCGAGGGACGGAGGGACGGAGGGGAGGGAGGA
AAAAGGAACACGGGCTGATCGTGAGCATATCACCCCAGCTTGCTGTAAGA
GACAGCGTGAGCACGAGCTGTCCATTCGGATCCGATTGAGCAAGTCTTGC
GATTCAGCCGTTTGTTATTTTCTTTTGCTGGCGGGAGAGAAACAGGAAGA
GACAACAGCTCTCTTCTTGCACGCGGCCGAGAAGGTGCGGACTTGCAGCA
TACGCTACAGACGCAGAGCCCTCAGGTTTGTCAGGGGGGCTTTAAGACTG
TCGTTTTGCTGGCAGAGTAGCGAGCAAGGTCGGAAGCAGGTGACGTGGGG
TGCCGGAAGAGGCAAGGTGCCAGAGATTTTGGGTGTCCTGTGAAAGATGG
AATCATCCTCGACAGACGTCGGGGAGGTGGTTGCCTTGGATGAAGGTCAC
CTACAATTCCAGTCTCTTTCTTGTTTGCTAGGAAGAAGAAGTCTGTCCAG
GGGTTAACCGGAACCCGACCGACTGGCGGCGAGCCAAATTCACTTTTTCA
GAAACTTCTGTTTTTTGTTCGTGCCACTTCCGCCACGTCGTCAGATGTCA
ACTGGTTCGACACGTCTGCACTTTGGTCGCTTCCACCATTTATTCCCCTT
CTCTTTCATCGATTTCCGCTAATAATGATACTGGAAACTGTATGGGTTTC
CGTTCAAGAAAAAAATGCTGGGTGGCGGGATTTGAACCCTGGTTTCAACG
TTACAACCGCCCTTAGGGAGTCGATCTCATCGTTGACGCCATTGTGAAAA
GAGGGAATCGTCCTCTACAGACGTCGGGAGGTTTTGAAGGTCACCTGCAC
AACAGTCCAGCAGTTTTACATACCACTTCATATGCTACAAGGCACCATTT
CACGCCAACCATTTTACATTGATACTTTCCCGGCAGCGCAGCAAGGCTGG
CAAAGACGATGAAACGAAGTGGTCGGACTTCGATTCCCGTGCTGGATTCG
TCGCTACCGGCACCTGGCCTCGCCGATAGGGAAAATCCACTTTTGACTAT
TAAGCAAAAATCTCGCGCACTGGGAGGAAAGGGTTTCCATCCGCGTACCC
GCTCTTGCAAGGACGCGTCGCGTGGAAAATCTATGGCGTGTGCGCAGCAC
AGAGGTGCGTTAACCGCTCGCCGGGGGGAGAATGAAGGTCAAAGAGATGT
TTCTAGCGGAGGAAATGCTGCGGCCACTCCACACGAGCAACAGGTGGCAG
TAGGTGACTCGACCACTCGACCTGTGCTCAACTGGTGGAGGAGTCAACGT
TTGACCGGCTCTGATGGGGGCGTCGTACCGGCTGCCGGGATCTCTCCAAA
TCGACCCTCTCCTGGTAGGCCTACAGAAAGGAATCGCCCAGAATCCGGCT
CCTGTTCTCCAGCGCTGCATACGACGAGTCGCAAACGCGATGTCCAGGAG
GAATCGTGGACTAAGGCTCAGCTCTACAGCCTGCGTCGTTCGCAAGCAGA
TACGGCACTCTCTGTGTCAGATTTTTGGGGTGCTGTGGCCAGCAACGTTC
AAGACAGGGACCCACAAGATTGCCAACAGAAATGGTTCGAGCATTTTGCA
ACCCCCAGAGGTCGGCGCCGGAAAGCCTCCAAGCAAGGCTCACCATCTCG
ATCGGCGGGAACGGCTCTCCTGTCTGACAACACGTCACGTTCGTCGCGGG
AAGTTACCGCAAACGCTCACGAGTCTCCTGAACGGATCAACCAACCGCCC
GAACGAGGTAATGGCGATGACCTGTTTGAAGCAACTCCGATGCGGGGGCG
TAGACAGGTTGGAACCCAGCCTACAGGTGGTGAGCTGGAGGCGAAGACCC
CGAGGACACCCGCGGGTCCCGGCGTACCAATCGATTATACCTCAGCAGTG
GAGGCAATACCGCGAGATGGAGCGGACTACAACCAACGCGGGATCAGCAA
GACGTATATCATGTCAAAGAAGATGCGTAGACGGGCATCGCAGCTTGGCA
AAAATAGTATGGTGACACGAGAACGAGCTAAGAAGACACCATATGGGTCA
GCGGGTCGTTCTTTTCATGCCGCCGCAATTTCGCAAGGGCATCAGTTGAA
AGTATCTGTTACCTCGTTGGGGGATGTGAGCCTTGCGTCCACTTGCAATG
ATGAGGATAGCGTCTGCCTATCCGGCAGTTGTGAGACTAGTGACGATGAA
TAAAAATGCACGACCTTTTTTGTCAAATTTGAACGAAGCCCAGACGACTT
ACTGTAAAATATCGATTCGCTCGTACCCCAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig133:217581..219962+

>mRNA_P-littoralis_Contig133.59.2 ID=mRNA_P-littoralis_Contig133.59.2|Name=mRNA_P-littoralis_Contig133.59.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1245bp|location=Sequence derived from alignment at P-littoralis_Contig133:217581..219962+ (Pylaiella littoralis U1_48)
ATGAAACGAAGTGGTCGGACTTCGATTCCCGTGCTGGATTCGTCGCTACC
GGCACCTGGCCTCGCCGATAGGGAAAATCCACTTTTGACTATTAAGCAAA
AATCTCGCGCACTGGGAGGAAAGGGTTTCCATCCGCGTACCCGCTCTTGC
AAGGACGCGTCGCGTGGAAAATCTATGGCGTGTGCGCAGCACAGAGGTGC
GTTAACCGCTCGCCGGGGGGAGAATGAAGGTCAAAGAGATGTTTCTAGCG
GAGGAAATGCTGCGGCCACTCCACACGAGCAACAGGTGGCAGTAGGTGAC
TCGACCACTCGACCTGTGCTCAACTGGTGGAGGAGTCAACGTTTGACCGG
CTCTGATGGGGGCGTCGTACCGGCTGCCGGGATCTCTCCAAATCGACCCT
CTCCTGGTAGGCCTACAGAAAGGAATCGCCCAGAATCCGGCTCCTGTTCT
CCAGCGCTGCATACGACGAGTCGCAAACGCGATGTCCAGGAGGAATCGTG
GACTAAGGCTCAGCTCTACAGCCTGCGTCGTTCGCAAGCAGATACGGCAC
TCTCTGTGTCAGATTTTTGGGGTGCTGTGGCCAGCAACGTTCAAGACAGG
GACCCACAAGATTGCCAACAGAAATGGTTCGAGCATTTTGCAACCCCCAG
AGGTCGGCGCCGGAAAGCCTCCAAGCAAGGCTCACCATCTCGATCGGCGG
GAACGGCTCTCCTGTCTGACAACACGTCACGTTCGTCGCGGGAAGTTACC
GCAAACGCTCACGAGTCTCCTGAACGGATCAACCAACCGCCCGAACGAGG
TAATGGCGATGACCTGTTTGAAGCAACTCCGATGCGGGGGCGTAGACAGG
TTGGAACCCAGCCTACAGGTGGTGAGCTGGAGGCGAAGACCCCGAGGACA
CCCGCGGGTCCCGGCGTACCAATCGATTATACCTCAGCAGTGGAGGCAAT
ACCGCGAGATGGAGCGGACTACAACCAACGCGGGATCAGCAAGACGTATA
TCATGTCAAAGAAGATGCGTAGACGGGCATCGCAGCTTGGCAAAAATAGT
ATGGTGACACGAGAACGAGCTAAGAAGACACCATATGGGTCAGCGGGTCG
TTCTTTTCATGCCGCCGCAATTTCGCAAGGGCATCAGTTGAAAGTATCTG
TTACCTCGTTGGGGGATGTGAGCCTTGCGTCCACTTGCAATGATGAGGAT
AGCGTCTGCCTATCCGGCAGTTGTGAGACTAGTGACGATGAATAA
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