mRNA_P-littoralis_Contig1328.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1328.9.1
Unique NamemRNA_P-littoralis_Contig1328.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1328.9.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 7.160e-76
Identity = 126/174 (72.41%), Postives = 144/174 (82.76%), Query Frame = 1 
Query:    7 GFSEEDQAAIKIPNTYKDAIQSPQHEQWKEAIDNEMNNLKKHKVYKLVPISSVPKTEKIIGTRFVFKQKVDGRFKARLVVQGHVQEAGIDYGRSYAPVCRIGSIRTLLAIACEHGWPVYQMDVAVAFLQSAIDKDVYVKLAPGRDVTDPKTGEITVYKLERSLYGLAQSPVLWY 528
            GF EE+  AIKIPNT+K+AI SP+ +Q K AI  E+++  KH+V+KLVPI+SVPK EK++GTRFVFKQK D RFK RLVVQGHVQE+GID GR YA VCRIGS+R   AIACE GWPV+QMDVAVAFLQ  IDKDV+VK APG+D  DP TG I VYKLERSLYGLAQSPVLWY
Sbjct:  368 GFLEEEHRAIKIPNTFKEAINSPETKQCKVAIGKELDSRAKHRVFKLVPITSVPKHEKVLGTRFVFKQKADERFKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWY 541
[Close]
BLAST of mRNA_P-littoralis_Contig1328.9.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 8.230e-70
Identity = 113/173 (65.32%), Postives = 132/173 (76.30%), Query Frame = 1 
Query:    7 GFSEEDQAAIKIPNTYKDAIQSPQHEQWKEAIDNEMNNLKKHKVYKLVPISSVPKTEKIIGTRFVFKQKVDGRFKARLVVQGHVQEAGIDYGRSYAPVCRIGSIRTLLAIACEHGWPVYQMDVAVAFLQSAIDKDVYVKLAPGRDVTDPKTGEITVYKLERSLYGLAQSPVLW 525
            G  EE   AIKIPNTY +A+ SPQ E+WK A   EM+N++KH VY LVP+SSV K EKI+GT+FVFK+K+DGRFKARLVV GH QE G DYGRSYAPVCRIGSIR   AI C + WP+YQ+DV  AFL +  D+DVYV+ APG    +  TGE  VYKLERSLYGL+QSP LW
Sbjct:  174 GILEETNQAIKIPNTYDEAMSSPQREEWKGACSKEMDNMRKHDVYNLVPLSSVLKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALW 346
[Close]
BLAST of mRNA_P-littoralis_Contig1328.9.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 2.080e-69
Identity = 115/173 (66.47%), Postives = 133/173 (76.88%), Query Frame = 1 
Query:    7 GFSEEDQAAIKIPNTYKDAIQSPQHEQWKEAIDNEMNNLKKHKVYKLVPISSVPKTEKIIGTRFVFKQKVDGRFKARLVVQGHVQEAGIDYGRSYAPVCRIGSIRTLLAIACEHGWPVYQMDVAVAFLQSAIDKDVYVKLAPGRDVTDPKTGEITVYKLERSLYGLAQSPVLW 525
            G  EE   AIKIPNTY +A+ SPQ E+WK A   EM+NL+KH VY LVP+SSVPK EKI+GT+FVFK+K+DGRFKARLVV GH QE G DYGRSYAPVCRIGSIR   AI C + WP+YQ+DV  AFL +  D+DVYV+ APG    +  TGE  VYKLERSLYGL+QSP LW
Sbjct:  330 GILEETNQAIKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALW 502
[Close]
BLAST of mRNA_P-littoralis_Contig1328.9.1 vs. uniprot
Match: A0A6H5KH19_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH19_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 1.010e-68
Identity = 111/173 (64.16%), Postives = 131/173 (75.72%), Query Frame = 1 
Query:    7 GFSEEDQAAIKIPNTYKDAIQSPQHEQWKEAIDNEMNNLKKHKVYKLVPISSVPKTEKIIGTRFVFKQKVDGRFKARLVVQGHVQEAGIDYGRSYAPVCRIGSIRTLLAIACEHGWPVYQMDVAVAFLQSAIDKDVYVKLAPGRDVTDPKTGEITVYKLERSLYGLAQSPVLW 525
            G  EE    IKIPNTY +A+ SPQ E+WK A   EM+NL+KH VY LVP+SSVPK EKI+GT+FVFK+ +DGRF+ARLVV GH QE G DYGRSYAPVCRIGSIR   AI C + WP+YQ+DV  AFL +  D+DVYV+ APG    +  TGE  VYKLERSLYGL+QSP +W
Sbjct:  135 GILEETNQTIKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKNLDGRFQARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPAVW 307
[Close]
BLAST of mRNA_P-littoralis_Contig1328.9.1 vs. uniprot
Match: A0A6H5KMR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR4_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 1.250e-68
Identity = 113/173 (65.32%), Postives = 131/173 (75.72%), Query Frame = 1 
Query:    7 GFSEEDQAAIKIPNTYKDAIQSPQHEQWKEAIDNEMNNLKKHKVYKLVPISSVPKTEKIIGTRFVFKQKVDGRFKARLVVQGHVQEAGIDYGRSYAPVCRIGSIRTLLAIACEHGWPVYQMDVAVAFLQSAIDKDVYVKLAPGRDVTDPKTGEITVYKLERSLYGLAQSPVLW 525
            G  EE   AIKIPNTY +A+ SPQ E+WK A   EM+NL+KH VY LVP+SSVPK EKI+GT+F FK+K+DGRFKARLVV GH QE G DYGRSYAPVCRIGSIR   AI C + WP+YQ+DV  AFL +  D+DVYV+ APG    +  TGE  VYKLERS YGL+QSP LW
Sbjct:  291 GILEETNQAIKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFGFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSPYGLSQSPALW 463
[Close]
BLAST of mRNA_P-littoralis_Contig1328.9.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 1.700e-68
Identity = 115/173 (66.47%), Postives = 133/173 (76.88%), Query Frame = 1 
Query:    7 GFSEEDQAAIKIPNTYKDAIQSPQHEQWKEAIDNEMNNLKKHKVYKLVPISSVPKTEKIIGTRFVFKQKVDGRFKARLVVQGHVQEAGIDYGRSYAPVCRIGSIRTLLAIACEHGWPVYQMDVAVAFLQSAIDKDVYVKLAPGRDVTDPKTGEITVYKLERSLYGLAQSPVLW 525
            G  EE   AIKIPNTY +A+ SPQ E+WK A   EM+NL+KH VY LVP+SSVPK EKI+GT+FVFK+K+DGRFKARLVV GH QE G DYGRSYAPVCRIGSIR   AI C + WP+YQ+DV  AFL +  D+DVYV+ APG    +  TGE  VYKLERSLYGL+QSP LW
Sbjct:  555 GIVEETNQAIKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCRNNWPIYQLDVIGAFLSALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALW 727
[Close]
BLAST of mRNA_P-littoralis_Contig1328.9.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 1.930e-68
Identity = 115/173 (66.47%), Postives = 133/173 (76.88%), Query Frame = 1 
Query:    7 GFSEEDQAAIKIPNTYKDAIQSPQHEQWKEAIDNEMNNLKKHKVYKLVPISSVPKTEKIIGTRFVFKQKVDGRFKARLVVQGHVQEAGIDYGRSYAPVCRIGSIRTLLAIACEHGWPVYQMDVAVAFLQSAIDKDVYVKLAPGRDVTDPKTGEITVYKLERSLYGLAQSPVLW 525
            G  EE   AIKIPNTY +A+ SPQ E+WK A   EM+NL+KH VY LVP+SSVPK EKI+GT+FVFK+K+DGRFKARLVV GH QE G DYGRSYAPVCRIGSIR   AI C + WP+YQ+DV  AFL +  D+DVYV+ APG    +  TGE  VYKLERSLYGL+QSP LW
Sbjct:  555 GILEETNQAIKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALW 727
[Close]
BLAST of mRNA_P-littoralis_Contig1328.9.1 vs. uniprot
Match: A0A6H5KS50_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS50_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 3.080e-68
Identity = 112/173 (64.74%), Postives = 131/173 (75.72%), Query Frame = 1 
Query:    7 GFSEEDQAAIKIPNTYKDAIQSPQHEQWKEAIDNEMNNLKKHKVYKLVPISSVPKTEKIIGTRFVFKQKVDGRFKARLVVQGHVQEAGIDYGRSYAPVCRIGSIRTLLAIACEHGWPVYQMDVAVAFLQSAIDKDVYVKLAPGRDVTDPKTGEITVYKLERSLYGLAQSPVLW 525
            G  EE   AIKIPNTY +A+ SPQ E+WK A   EM+NL+KH VY LVP+SSVPK E+I+GT+FVF +K+DGRFKARLVV GH Q  G DYGRSYAPVCRIGSIR   AI C + WP+YQ+DV  AFL +  D+DVYV+ APG    +  TGE  VYKLERSLYGL+QSP LW
Sbjct:  273 GILEETNQAIKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEQILGTKFVFTKKLDGRFKARLVVGGHRQAPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALW 445
[Close]
BLAST of mRNA_P-littoralis_Contig1328.9.1 vs. uniprot
Match: A0A6H5KLG0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG0_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 5.880e-68
Identity = 111/173 (64.16%), Postives = 131/173 (75.72%), Query Frame = 1 
Query:    7 GFSEEDQAAIKIPNTYKDAIQSPQHEQWKEAIDNEMNNLKKHKVYKLVPISSVPKTEKIIGTRFVFKQKVDGRFKARLVVQGHVQEAGIDYGRSYAPVCRIGSIRTLLAIACEHGWPVYQMDVAVAFLQSAIDKDVYVKLAPGRDVTDPKTGEITVYKLERSLYGLAQSPVLW 525
            G  EE   AIKIPNTY +A+ SPQ E+W  A   EM++L+KHKVY LVP+SSVPK EK++GT+FVFK K+DGRFKARLVV GH QE G DYGRSYAPVCRIGSIR   AI C + WP+YQ+DV  AFL +   +DV+V+ APG    +  TGE  VYKLERSLYGL+QSP LW
Sbjct:  446 GILEETNQAIKIPNTYDEAMSSPQREEWTGACSKEMDDLRKHKVYNLVPLSSVPKGEKVLGTKFVFKNKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCGRDVHVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALW 618
[Close]
BLAST of mRNA_P-littoralis_Contig1328.9.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 1.360e-67
Identity = 113/173 (65.32%), Postives = 131/173 (75.72%), Query Frame = 1 
Query:    7 GFSEEDQAAIKIPNTYKDAIQSPQHEQWKEAIDNEMNNLKKHKVYKLVPISSVPKTEKIIGTRFVFKQKVDGRFKARLVVQGHVQEAGIDYGRSYAPVCRIGSIRTLLAIACEHGWPVYQMDVAVAFLQSAIDKDVYVKLAPGRDVTDPKTGEITVYKLERSLYGLAQSPVLW 525
            G  EE   AIKIPNTY +A+ SPQ E+WK A   EM+NL+KH VY LVP+SSV K EKI+GT+F FK+K+DGRFKARLVV GH QE G DYGRSYAPVCRIGSIR   AI C + WP+YQ+DV  AFL +  D+DVYV+ APG    +  TGE  VYKLERSLYGL+QSP LW
Sbjct:  555 GILEETNQAIKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVRKGEKILGTKFAFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALW 727
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1328.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9R3_9PHAE7.160e-7672.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KTY2_9PHAE8.230e-7065.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE2.080e-6966.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KH19_9PHAE1.010e-6864.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMR4_9PHAE1.250e-6865.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRJ1_9PHAE1.700e-6866.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCT3_9PHAE1.930e-6866.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KS50_9PHAE3.080e-6864.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KLG0_9PHAE5.880e-6864.16Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K1R7_9PHAE1.360e-6765.32Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1328contigP-littoralis_Contig1328:33032..33559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog588726.J7SAF1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size528
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.57e-33
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,3RTT4@4891|Saccharomycetes,3S0WE@4893|Saccharomycetaceae
DescriptionTkp5 protein
Cds size528
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789607.837163-CDS-P-littoralis_Contig1328:33031..335591680789607.837163-CDS-P-littoralis_Contig1328:33031..33559Pylaiella littoralis U1_48CDSP-littoralis_Contig1328 33032..33559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1328.9.1prot_P-littoralis_Contig1328.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1328 33032..33559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1328.9.1

>prot_P-littoralis_Contig1328.9.1 ID=prot_P-littoralis_Contig1328.9.1|Name=mRNA_P-littoralis_Contig1328.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=176bp
QTGFSEEDQAAIKIPNTYKDAIQSPQHEQWKEAIDNEMNNLKKHKVYKLV
PISSVPKTEKIIGTRFVFKQKVDGRFKARLVVQGHVQEAGIDYGRSYAPV
CRIGSIRTLLAIACEHGWPVYQMDVAVAFLQSAIDKDVYVKLAPGRDVTD
PKTGEITVYKLERSLYGLAQSPVLWY
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mRNA from alignment at P-littoralis_Contig1328:33032..33559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1328.9.1 ID=mRNA_P-littoralis_Contig1328.9.1|Name=mRNA_P-littoralis_Contig1328.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig1328:33032..33559+ (Pylaiella littoralis U1_48)
CAAACCGGGTTCTCGGAGGAGGATCAAGCAGCCATCAAAATCCCGAACAC
CTACAAGGATGCCATCCAATCACCTCAACACGAGCAGTGGAAAGAAGCTA
TCGACAACGAGATGAACAACCTAAAGAAACACAAGGTTTACAAGCTTGTA
CCTATTTCTAGCGTGCCCAAAACGGAGAAGATCATCGGCACCCGCTTCGT
CTTCAAGCAAAAGGTGGATGGTCGGTTCAAGGCGCGACTGGTAGTTCAGG
GCCACGTTCAAGAAGCCGGAATAGACTACGGCAGGAGCTACGCCCCGGTA
TGCCGCATCGGGAGCATTCGCACTCTACTCGCCATAGCATGCGAGCACGG
ATGGCCAGTCTACCAAATGGACGTCGCGGTCGCGTTCCTACAATCTGCGA
TCGATAAGGACGTGTACGTCAAACTCGCTCCGGGACGGGACGTGACAGAT
CCCAAGACAGGCGAAATCACGGTCTACAAACTCGAGCGGAGCCTGTACGG
ACTAGCGCAATCACCTGTGCTGTGGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1328:33032..33559+

>mRNA_P-littoralis_Contig1328.9.1 ID=mRNA_P-littoralis_Contig1328.9.1|Name=mRNA_P-littoralis_Contig1328.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig1328:33032..33559+ (Pylaiella littoralis U1_48)
CAAACCGGGTTCTCGGAGGAGGATCAAGCAGCCATCAAAATCCCGAACAC
CTACAAGGATGCCATCCAATCACCTCAACACGAGCAGTGGAAAGAAGCTA
TCGACAACGAGATGAACAACCTAAAGAAACACAAGGTTTACAAGCTTGTA
CCTATTTCTAGCGTGCCCAAAACGGAGAAGATCATCGGCACCCGCTTCGT
CTTCAAGCAAAAGGTGGATGGTCGGTTCAAGGCGCGACTGGTAGTTCAGG
GCCACGTTCAAGAAGCCGGAATAGACTACGGCAGGAGCTACGCCCCGGTA
TGCCGCATCGGGAGCATTCGCACTCTACTCGCCATAGCATGCGAGCACGG
ATGGCCAGTCTACCAAATGGACGTCGCGGTCGCGTTCCTACAATCTGCGA
TCGATAAGGACGTGTACGTCAAACTCGCTCCGGGACGGGACGTGACAGAT
CCCAAGACAGGCGAAATCACGGTCTACAAACTCGAGCGGAGCCTGTACGG
ACTAGCGCAATCACCTGTGCTGTGGTAC
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