mRNA_P-littoralis_Contig1327.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1327.2.1
Unique NamemRNA_P-littoralis_Contig1327.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1327.2.1 vs. uniprot
Match: A0A6H5JJH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH3_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.510e-31
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 2 
Query:  221 VLEYRDATTFKLDSVKVAPSDVHGHGLMTTRRVAKGAEVFTVDLPDCGEEQGYTPDMYDDYAHIAHKDGESAALIDAGSTMEGNL 475
            VL YR+ TTF+LD V+VAPS+ HGHGL +T     G +VF   LPDCG+EQGYTPD Y+DY H+AHKDGESAALID GST+EG L
Sbjct:  218 VLYYRNVTTFRLDCVRVAPSNAHGHGLFSTLHAEAGCDVFVAVLPDCGKEQGYTPDKYNDYVHVAHKDGESAALIDFGSTVEGIL 302
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1327.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJH3_9PHAE4.510e-3167.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1327contigP-littoralis_Contig1327:2427..6512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size482
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789607.5511298-UTR-P-littoralis_Contig1327:2426..26281680789607.5511298-UTR-P-littoralis_Contig1327:2426..2628Pylaiella littoralis U1_48UTRP-littoralis_Contig1327 2427..2628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789607.5627763-CDS-P-littoralis_Contig1327:2628..26461680789607.5627763-CDS-P-littoralis_Contig1327:2628..2646Pylaiella littoralis U1_48CDSP-littoralis_Contig1327 2629..2646 +
1680789607.5729997-CDS-P-littoralis_Contig1327:6251..65121680789607.5729997-CDS-P-littoralis_Contig1327:6251..6512Pylaiella littoralis U1_48CDSP-littoralis_Contig1327 6252..6512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1327.2.1prot_P-littoralis_Contig1327.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1327 2629..6512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1327.2.1

>prot_P-littoralis_Contig1327.2.1 ID=prot_P-littoralis_Contig1327.2.1|Name=mRNA_P-littoralis_Contig1327.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
MSVTQQVLEYRDATTFKLDSVKVAPSDVHGHGLMTTRRVAKGAEVFTVDL
PDCGEEQGYTPDMYDDYAHIAHKDGESAALIDAGSTMEGNLLA
back to top

mRNA from alignment at P-littoralis_Contig1327:2427..6512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1327.2.1 ID=mRNA_P-littoralis_Contig1327.2.1|Name=mRNA_P-littoralis_Contig1327.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4086bp|location=Sequence derived from alignment at P-littoralis_Contig1327:2427..6512+ (Pylaiella littoralis U1_48)
GGTCGGGCCATGCCACCAGCAGGCCGCAATGCGTGCAAACCACAGCAGCA
GCAGATGGAACGTCGGCACGAGCTAGGCAAACGTGACGATCCGTCACCTA
TCGTAAACGGTCCTATTTATAGCACAGAGTACTGGCGCAAGTGGAAACAT
CGATCTAGAGCTGGTGCTCGTGCGGGCAGCGGAGGTGGCACCGATACTCC
ACATGTCAGTGACACAGCAGGCACGTCCTGACGGCATGATGAACACTGGG
GTGAATACCTTACGCCGCACTACAAACAGTGAAGATGCAAGTTGAACAAT
GAGACCACAGAACAGTTCGTACCTTACTAAACCTAACCCTAACCCTAAAC
CTGTGGAGAATTGTGCGATTCAATTTGGTGTTGTTCTAGGCGAGATCTCG
CTCCATATCCCCTCCCTCACACCAAAAACTACTCACGTGACCACTACCTA
CATACTTCGAAGTATAATTTAACCATCTCATAATTGCAGTAAATCGTACA
TCCATACGAAGTACTTTATCACAAAGCAAACAAGGAATTACTGTACAGCA
TTACGTGTAGTATAATGCGTATGATTGATAGGAAAAAGGAAATCGCAATA
CTGCTGTACGGCGAAAATAAAACAAAAAACCGACGGAGGTCTGCGGTCCC
TCTCCGACTAAGCACAATACCTGTGAACCGTCTCCACATTTTTGGGGACA
TTTGATGATACTTCAGAAAGGCCGCAGGCCGAAGGATGCCGCACATTTTA
GCCGGAGGCATGTGCGGCATTTGGCCCCCCGCCAGGACCAGTTTTTTTTT
ATTTGGGGATATAATTTAGCTTGTGCATTTTCTTTCCGGCTGCTTCGATG
ACCACTTTCGGGGGAGATGTTGGTGGTGAAGACTCCCCTTGCCTTCGCCG
TTTCTCTGGCGCTCGCATCAGCAGCGTCTCATTGTTCTTCTCCGATACGG
TCAAGCCAACAACCGCGAACACTCCCACGACGATAGCCACCATTCCAGTT
AGTCCGGCGGGCGATCTCGAGACGAAGCCTGCATCGTCGGTGGACAGCAT
CCCCCATACCGCCCTCCGCACGCGCTCCAGGCGAATCTCCGTCCTTCGAT
CCGCCCCCTCCTCGTCTTCTTCTTCTTCTTCTTCAAGCACCAGTTCGCAC
AGGATGGCCTCGTCCCTGCTAAACCGCTCCAGGACAACTTCGAGTGCCGC
TACGACGAAGATGTTGAGCAGCAGTGGCGACTGTACACATCTTCGTCGCA
GTCCCTGGGTGATTCTGAACCAGGCCGAGAATGACCAGTTTTCTATGCGG
ACTCGGGCTAGAATGCCGTCATGGAATCGGCGGATGAATGTAACCAATTC
GCCCGGTACGCCGGCTCGGACCAGAGTATTTTCCACAACAGTTCCCGGTG
GACCGAGTCGAAGGTCTTCTGGAAGTCGACGAAGCACATGTTGAGTGGTA
CTATTATTTGTCGTCCTAGTTCCTGGAGTCGGCGGACTGCGAACAGCATG
TCGACTGTGGGTACGGAAATATGAAAAAAAAAACGGACAGCTCCAAGTAG
AATCTAAAAAAGTACTGGACGCCTTCAAAGTAAACGTGTGCACGCGAAGG
ACAGGTCAAGTTTCTCAGATCGGATCTGGATCCAGATCGGTCGCAGATCA
TCGTTATCTGTGCGCACAGATGATCTGTACAGGTTTTGTGATATTTCGCA
CGCGTAGGACAGACAGATCCCTTAGATCTGATCTTAATTCAGGTCGGTCG
TCGATGATCGTTTCCTGTGCGCACGAATGATCTATGCATGTTTTTaAAAG
GTGTGATCTGTATCACTCGCCTCCAGTATACGTTAATCTTCTATGGGTGC
TCGTAAAGCAATCATATCTTGAATGCTTTTTCGAAAGTAGTTTGATATAT
ACTTTGCTATGCACAGAAACTGTAGTGCTGCTCGTGTCAGGTAAAGCAGT
TGACGTTAGGAGTTGGTCTACAATACAGGTGTTGTCAACTATCCCAACAG
TTTAGTTGTTCGTGGGAATTTTTCTGTCAAAGCGTTACATGCTCGCGGTA
GGGTGGTGGAAGCCCTCGAACAAAAGGCGACGCACGTCCTCCATCGGGGT
CCACGCTCACCAGGCTACTGCTGTAGCTACGATATCCGTGTTGTTGATGG
TGTTGGTGTTGTCAGAGTTGTTAATGACGATGGTCGTGGTGGGTGGTGCT
TGTGTTATTTGTTGTAAAACAATGTTGCTGCTGTTGTTGCGTCGTGCTTT
TTCGCGTTTCGTGGGGTTGTACATACGGAAGAACCAACCGCTCCTTCTCG
AATAACTCGCGCAAATAGCCATCATTCAATGCACGTTTGTCTTTGCGTTT
TGCTACTGTACACGACGGACGTGCGGGGGGGGAACGACCGCACTCTTATC
ATGGCTTGCGTTACCTCTACCCCTGACTCAACCACCGACAGAGTGAACAC
CCGAACTTCGCTACCCGCGCTCGGAACATCAAGAATACAGTGGTGAGGAG
GAGACGCGAAACGCTGCAGGCGGTGCGAGATGGGTTGCTAAGGGGAGGGC
CGGGTCATGCGTTGCGCGTCTCCCTCCTCACCACTGTATTCCTGATGTTC
CAAAGGCGGGTAGTGAAGCTCGAGGGTGTTCACCGTCTTGTTGGTTGAGT
CAGGGGTAGAGGCAACGCAAGCTATATGACAAGCGTCTGGTCGTTCCCTC
CAAGCGCGTCCTCCGTTTACAGCAGAAGGAATTAGTTGCGGCTGGCATTT
GTTTTGCTTTCAATTCTTACTTGTTGTTGCGTCCTTCTGCTGAGCTGTTT
TCGTTTTGTGTGTGCCTTCTGCTGCCCGCTTCTGTGGAATAAGCGCTTGT
TTCTTTGTTGCCGGCGGTGGTGCCGGTGATTCTTTCGTTACGACCTTTTT
TTTATCATATTCTCGATATGCGCTAGATATCAGCAGCATCGTCAACGTAA
TCAACAACAACCACAACAACCAACAACGAACGACTAATGTCACAAACGCA
ATGGACGTGGAGCTGACGAAGCTCCGCAGCATTGCCGGTACCCTCGAGCT
ATCAAAGAGCCGCGATCTACGAACAGGCGTCGTGGGTTTTGGAAAAGGGG
GGGGTGGTGATGAAGCATCCCCGACTACGGTTTGAGAATTTCACATCATG
TTGATCGCACCCTCTTTCATCACTCCTCAACATGTCGACATTATTTTTTT
ACCAGTATGGTGTATGAGTACCATCATGGCATGTTCCAGGGTGGCCGACT
ACCACCCAAAAAATACCGCGCATCACCGTGGTGGCTGTGTACCACGGGAG
GGTTCACCGGGGTGGCCGATTACCGTAAGAAAATACCGTCCATTTCCGTG
AGGGCTGAGTACGATAGGGTTTACCGGGGCGGCCGTTGACCGTCGATAAA
ATTTCGTTCAACATGGTGGAGGCTGAATACCTCAGTATTGGGTGCCACCC
TGAAAATCATGACCCAGAAGAGCCCTGAAAAGTTCCAGGGCTTCTCTCGG
TAACATTTGAGCACGGTGACGATTACTGTACCGTGGTACTCAGCCGTCAC
GGTATTGAAAGGAATTTTTAGTGACAATTGGCCACCCGGGTAACCCACCT
GTGGTTCTCAGCCACCACGATAATGCACTTTTTTTTGTGGGTGGCAGCCG
CCAACAACCTGCTTGCCTCCTCCGACAGGCACGCTCGCGACACCCTGGTT
ACCCTCCGCGCAAGAAGCAATAGTACCAGCGGAAGAAGGACTGCGGGAAA
GATAACAACCTCGTTACCTGCTAACCTCGTCGTCTTGACGCGAGACTCCC
GGTCCTTCACTTGCTCTGTAAACAGGTGTTGGAGTATCGAGACGCCACCA
CGTTCAAGCTTGACAGTGTGAAGGTTGCCCCCTCTGACGTCCACGGACAC
GGGTTGATGACTACGAGAAGAGTAGCCAAGGGCGCTGAAGTTTTCACGGT
TGACCTGCCCGATTGCGGCGAGGAGCAGGGGTACACCCCAGACATGTACG
ACGACTACGCTCACATCGCCCACAAGGACGGGGAGAGTGCGGCGCTCATC
GACGCTGGATCGACGATGGAGGGGAATTTGTTAGCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1327:2427..6512+

>mRNA_P-littoralis_Contig1327.2.1 ID=mRNA_P-littoralis_Contig1327.2.1|Name=mRNA_P-littoralis_Contig1327.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig1327:2427..6512+ (Pylaiella littoralis U1_48)
ATGTCAGTGACACAGCAGGTGTTGGAGTATCGAGACGCCACCACGTTCAA
GCTTGACAGTGTGAAGGTTGCCCCCTCTGACGTCCACGGACACGGGTTGA
TGACTACGAGAAGAGTAGCCAAGGGCGCTGAAGTTTTCACGGTTGACCTG
CCCGATTGCGGCGAGGAGCAGGGGTACACCCCAGACATGTACGACGACTA
CGCTCACATCGCCCACAAGGACGGGGAGAGTGCGGCGCTCATCGACGCTG
GATCGACGATGGAGGGGAATTTGTTAGCG
back to top