mRNA_P-littoralis_Contig1326.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1326.3.1
Unique NamemRNA_P-littoralis_Contig1326.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1326.3.1 vs. uniprot
Match: A0A6H5K2U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.210e-18
Identity = 56/103 (54.37%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:    1 MDATTICVDRTSRKGSVVDVAKMVLECDTDEAQTACIKI-GALPDEGQR----RINGSGGLTAVAEVDMLVELAWLLPAEISDYVPRQMSHTVCKLLKGDPSL 294
            MDA  I VDR S KGSV DVAK+VL+CD +EA+ A  K+ GA  D  +     +IN  G LT VA V+MLVE+ WLLP  I+D V R +SH VCK L GD  L
Sbjct:    1 MDA-VIRVDRASNKGSVTDVAKLVLKCDDEEAEKAVRKLLGATSDTDRDFLRVQINNRGRLTLVAGVNMLVEIVWLLPGVIADDVRRDISHKVCKALGGDTRL 102
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BLAST of mRNA_P-littoralis_Contig1326.3.1 vs. uniprot
Match: D8LP49_ECTSI (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP49_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.420e-14
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 1 
Query:    1 MDATTICVDRTSRKGSVVDVAKMVLECDTDEAQTACIKI-GALPDEGQR----RINGSGGLTAVAEVDMLVELAWLLPAEISDYVPRQMSHTVCKLLKGDPSLYAR--PKNVTLRCVKNACE 345
            MD  TI  D+ ++KGSV+D  +MVL CD+  A TA  ++  A P+ G R    ++NG G  T VA+   L+E+ WLLP + +    RQ S  VC+LL GD SL +    ++ TL+  +   E
Sbjct:    7 MDGATIRADKQTKKGSVMDTIRMVLRCDSSNANTAFGRLLQAHPELGSRCTRSKLNGKGNETPVADAKTLIEIVWLLPGKKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRE 128
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BLAST of mRNA_P-littoralis_Contig1326.3.1 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC)

HSP 1 Score: 72.0 bits (175), Expect = 2.000e-11
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:    1 MDATTICVDRTSRKGSVVDVAKMVLECDTDEAQTACIKI-----GALPDEGQRRINGSGGLTAVAEVDMLVELAWLLPAEISDYVPRQMSHTVCKLLKGDPSL 294
            MD +TI VD+ ++ GSV+D  +MVLECD+  A T+  ++     G      Q ++NG G  T VA+   L+E+ WLLP   +     Q    +C+LL GD SL
Sbjct:   25 MDGSTIRVDKNTKLGSVIDTIRMVLECDSSNANTSLGRLVLSHPGLGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSL 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1326.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K2U9_9PHAE1.210e-1854.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP49_ECTSI1.420e-1439.34EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculos... [more]
B5LWM4_9PHYC2.000e-1138.83Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1326contigP-littoralis_Contig1326:20673..21331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LP49
Model size584
Max annot lvl2880.D8LP49|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.49e-16
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789607.4463067-UTR-P-littoralis_Contig1326:20672..208311680789607.4463067-UTR-P-littoralis_Contig1326:20672..20831Pylaiella littoralis U1_48UTRP-littoralis_Contig1326 20673..20831 -
1680789607.4595122-UTR-P-littoralis_Contig1326:20906..209411680789607.4595122-UTR-P-littoralis_Contig1326:20906..20941Pylaiella littoralis U1_48UTRP-littoralis_Contig1326 20907..20941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789607.471549-CDS-P-littoralis_Contig1326:20941..213311680789607.471549-CDS-P-littoralis_Contig1326:20941..21331Pylaiella littoralis U1_48CDSP-littoralis_Contig1326 20942..21331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1326.3.1prot_P-littoralis_Contig1326.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1326 20942..21331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1326.3.1

>prot_P-littoralis_Contig1326.3.1 ID=prot_P-littoralis_Contig1326.3.1|Name=mRNA_P-littoralis_Contig1326.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MDATTICVDRTSRKGSVVDVAKMVLECDTDEAQTACIKIGALPDEGQRRI
NGSGGLTAVAEVDMLVELAWLLPAEISDYVPRQMSHTVCKLLKGDPSLYA
RPKNVTLRCVKNACEPAPNMITCQRNLGI*
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mRNA from alignment at P-littoralis_Contig1326:20673..21331-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1326.3.1 ID=mRNA_P-littoralis_Contig1326.3.1|Name=mRNA_P-littoralis_Contig1326.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=659bp|location=Sequence derived from alignment at P-littoralis_Contig1326:20673..21331- (Pylaiella littoralis U1_48)
ATGGATGCAACGACAATCTGCGTCGATCGGACATCGCGTAAGGGATCAGT
CGTGGACGTGGCGAAGATGGTGCTCGAGTGTGATACAGACGAAGCACAGA
CCGCTTGTATCAAGATTGGAGCGCTTCCAGATGAGGGGCAGCGACGGATC
AATGGCAGCGGAGGTTTAACGGCCGTCGCAGAGGTCGACATGCTTGTTGA
GCTCGCGTGGTTGCTGCCAGCGGAGATTTCAGACTACGTACCCCGCCAGA
TGTCGCACACCGTGTGTAAGCTGCTCAAGGGTGACCCAAGCCTGTACGCG
AGACCGAAAAATGTCACATTGCGATGCGTGAAAAATGCTTGCGAGCCGGC
GCCCAACATGATCACATGCCAGCGGAATTTAGGCATCTGAGTGAGGAAGA
TCGTGAGGTGTTCGCAAGACAAATGGTTGAGTTGTCCATGAAATCCAGGG
ACCAGGAGCTTCAGAAGGGGTACCAGGACCTTCGTAGGAATGATTATGAG
CTGCAAGAAAAGGGCATGTCGCTCAAGAGAAAGAGGGTGGACGAAATAGT
TTACTTATATCAAATTTGCGAGGAAATCGGCGTCGAGGTTGACACAGATG
CAAAATTTCATGTTCTCGACAGCGTCAAAATGCTCACCCAGCAAAACTTT
GGCATCGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1326:20673..21331-

>mRNA_P-littoralis_Contig1326.3.1 ID=mRNA_P-littoralis_Contig1326.3.1|Name=mRNA_P-littoralis_Contig1326.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig1326:20673..21331- (Pylaiella littoralis U1_48)
ATGGATGCAACGACAATCTGCGTCGATCGGACATCGCGTAAGGGATCAGT
CGTGGACGTGGCGAAGATGGTGCTCGAGTGTGATACAGACGAAGCACAGA
CCGCTTGTATCAAGATTGGAGCGCTTCCAGATGAGGGGCAGCGACGGATC
AATGGCAGCGGAGGTTTAACGGCCGTCGCAGAGGTCGACATGCTTGTTGA
GCTCGCGTGGTTGCTGCCAGCGGAGATTTCAGACTACGTACCCCGCCAGA
TGTCGCACACCGTGTGTAAGCTGCTCAAGGGTGACCCAAGCCTGTACGCG
AGACCGAAAAATGTCACATTGCGATGCGTGAAAAATGCTTGCGAGCCGGC
GCCCAACATGATCACATGCCAGCGGAATTTAGGCATCTGA
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